Entry information : PtroPxd01
Entry ID 5828
Creation 2007-10-09 (Marcel Zamocky)
Last sequence changes 2016-02-11 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2016-02-11 (Achraf Jemmat)
Peroxidase information: PtroPxd01
Name PtroPxd01
Class Peroxidasin    [Orthogroup: Pxd001]
Taxonomy Eukaryota Metazoa Chordata Mammalia Hominidae Pan
Organism Pan troglodytes (chimpanzee)    [TaxId: 9598 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtroPxd01
start..stop
S start..stop
HsPxd02 3018 0 1..1463 1..1463
HsPxd03 3009 0 1..1463 1..1463
MmulPxd01 2691 0 1..1463 1..1413
CjaPxd02 2674 0 1..1463 1..1456
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '5828' 'complement(join(1..132,898..1011,19756..19885,25964..26078,52003..52211,54627..54761,87940..89434,91119..91276,93023..93131,103430..103586,106514..106626,128134..128292,130133..130249,134675..134941,138440..138609,152977..153094,155749..155918,164411..164482,183766..183837,238798..238869,274403..274474,341845..341916,497127..497290))' Exons


exon

Literature and cross-references PtroPxd01
Literature Chimpanzee Sequencing and Analysis Consortium Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437 (7055), 69-87 (2005).
Protein ref. GenBank:   XP_519754.2
DNA ref. GenBank:   NC_006475.2 (49843902..49346613)
mRNA ref. GenBank:   XM_519754
Cluster/Prediction ref. Genebank:   464171
Protein sequence: PtroPxd01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   1463 (1440)
PWM (Da):   %s   163366.95 (160721.6)  
PI (pH):   %s   7.19 (7.19) Peptide Signal:   %s   cut: 24 range:24-1463
Sequence
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MEPRLFCWTTLFLLAGWCLPGLPCPSRCLCFKSTVRCMHLMLDHI
PQVPQQTTV
LDLRFNRIREIPGSAFKKLKNLNTLLLNNNHIRKISRNAFEGLENLLYLYLYKNEIHALDKQTFKGLISLEHLYIHFNQLEMLQPETFGDLLRLERLFLHNNKLSKIPAGSFSNLDSLKRLRLDSNALVCDCDLMWLKELLQGFAQHGHTQAAATCEYPRRLHGRAVASVTVEEFNQSPRITFEPQDVEVPSGNTVYFTCRAEGNPKPEIIWIHNNHSLDLEDDTRLNVFDDGTLMIRNT
RESDQGVYQCMARNAAGEAKTQSAMLRYSSL
AKPSFVIQPQDTEVLIGTSTTLECMATGDPHPHITWTRDNGLELDGSRHVATSSGLYLQNITQRDHGRFTCHANNSHGTVQAAANIIVQAPPQFTVTPKDQVVLEEHAVEWLCEADGNPPPVIVWTKTGGQLPVEGQHTVLSSGTLRIDRAAQHDQGQYECQAISSLGVKKVSVQLTVKPKALAVFTQLPQDTSVEVGKNINISCHAQG
EPQPIITWN
EGVQITESGKFHVDDEGTLTIYDAGFPDQGRYECVARNSFGLAVTNMFLTVTAIQGRQAGDDFVESSILDAVQRVDSAINSTRRHLFSQKPHTSSDLLAQFHYPRDPLIVE
MARAGEIFEHTLQLIRERVKQGLTVDLED
EFRYNDLVSPRSLSLIANLSGCTARRPLPNCSNRCFHAKYRAHDGTCNNLQQPTWGAALTAFARLLQPAYQDGIRAPRGLGLPVGSRQPLP
PPRLVATVWARAAAVTPDHSNTRMLMHWGWFLEHDLDHTVPALSTARFSDGRPCSSVCTNDPPCFPMNTRHADPRGTHAPCMLFARSSPACASGRPSATVDSVYAREQINQQTAYIDGSN
VYGSSERESQALRDPSVPRGLLRTGFPWPASGKPLLPFSTGPPTECARQEQDSPCFLAGDHRANEHLALTAMHTLWFREHNRVATELSALNPHWEGNTVYQEARKIVGAELQHITYSHWL
PKVLGDPGTRMLRGYRGYNPNVNAGIINSFATAAFRFGHTLINPILYRLNATLGEISEGHLPFHKALFSPSRIIKEGGIDPVLRGLFGVAAKWRAPSYLLSPELTQRLFSAAYSAAVDSA
ATIIQRGRDHGIPPYADFRVFCNLTSVKNFEDLQNEIKDSEIRQKLR
KLYGSPGDIDLWPALMVEDLIPGTRVGPTLMCLFVTQFQRLRDGDRFWYENPGVFTPAQLTQLKQASLGRVLC
DNGDSIQQVQADVFVKAEYPQDYLSCSEIPKVDLRVWQDCC
DCRSRGQFRAVTQESQKKRSAQYSYPDDKDMELSHLRSRQQDKIYVGEDARNVTVLAKTKFSQDFSTFAAEIQETITAL
RE
INKLEARLRQAGCTDVKGVPRKAEERWMKEDCTHCICESGQVTCVVEICPPAPCPSPELVKGTCCPVCRDRGMPSDSPEKR*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 8, 15 introns). No EST. Isolate="Yerkes chimp pedigree #C0471 (Clint)". Peroxidase domain located between positions 726-1273
DNA
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CDS
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