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Entry information : PpaRboh03-4
Entry ID 6090
Creation 2008-01-30 (Christophe Dunand)
Last sequence changes 2008-01-30 (Christophe Dunand)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2012-04-19 (Catherine Mathe)
Peroxidase information: PpaRboh03-4
Name PpaRboh03-4
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh005]
Taxonomy Eukaryota Viridiplantae Streptophyta Funariaceae Physcomitrella
Organism Physcomitrella patens    [TaxId: 3218 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PpaRboh03-4
start..stop		 S start..stop
PpaRboh03-2 1273 0 3..800 14..827
PpaRboh03-3 1152 0 2..800 87..886
PpaRboh03-1 1127 0 34..800 1..775
MpRboh02 990 0 28..800 213..1023
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '6090' 'join(1428102..1428372,1428507..1428666,1428803..1428965,1429095..1429509,1429652..1430022,1430136..1430231,1430357..1430649,1430769..1430931,1431050..1431334,1431462..1431540,1431682..1431788)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1428102..1428372 269 N° 2 1428507..1428666 158 N° 3 1428803..1428965 161 N° 4 1429095..1429509 413
N° 5 1429652..1430022 369 N° 6 1430136..1430231 94 N° 7 1430357..1430649 291 N° 8 1430769..1430931 161
N° 9 1431050..1431334 283 N° 10 1431462..1431540 77 N° 11 1431682..1431788 105  
join(1428102..1428372,1428507..1428666,1428803..1428965,1429095..1429509,1429652 ..1430022,1430136..1430231,1430357..1430649,1430769..1430931,1431050..1431334,14 31462..1431540,1431682..1431788)


exon

Literature and cross-references PpaRboh03-4
DNA ref. Phytozome 12:   scaffold_18 (1428102..1431788)
Cluster/Prediction ref. UniGene:   Ppa.13718
Protein sequence: PpaRboh03-4
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   800
PWM (Da):   %s   90955.76 Transmb domain:   %s   o253-272i387-409o435-457i612-629o
PI (pH):   %s   9.34
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MTRNASKAQDYITPVEQSESPDLELGRPGSPRNMQKSTSRAEYALQAVRCISKATATDDEKKLWEKVEQRFVKLADADSMLPRSNFAECIGMKESKEFANELFDALVRCKGEKVNSISKQ
ELYQYWLVIANKSFDGRMQMFFALCDKDLDGRITAEEVKQVIVLSASANKLSVLKEQASEYAALIMEELDVNRNGYILSEFESLMRGSVMAANGKEPTVQYNQMLKQKSKRTKVQDATGK
AKHFLHDYWKRLWILALWVMAMTGLFTWKFLQYRHHEAYAVMGECLCVAKGAAETLKLNMALILLPVCRNMLTRLRSTRLGKLIPFDENLDFHKATIAVGVFVHGTLHITCDIPKFVNCD
DEKFFEALGDQFDKHPTYADIAVTPVAITGILMVVLMAIAMLLATHWIRRSLVKFPWPLHRLTGFNTFWYSHHLFVIVYALLLVHSIKLLLAGSWYKRIWMYTAVPLVLYASERFLRLYR
TNYSKVEVVKAAVYTGNVLAIHMTKPAGFKYKSGMYLFLQCPAISSFEWHPFSITSAPDDPFLSVHIRTLGDWTTEMRKIFSDSLGGKTRLQAINDYGLSGELTLAPRFPKLYIDGPYGA
PAQDYLKYDVLLLVGLGIGATPFISILKDMLHHSRNDSVSDSSSPDLNPTGSPPPKKKAKRDPKAYFYWVTREQGSFDWFRGIMREVEEIDNKELIEMHNYLTSVYEEGDARSTLVTMLQ
SLHHAKNGVDVVSGTRARTHFARPNWKNVFTNMADTHPNKRIGVFYCGPASLVNELKTLSKAFTKKSTKFFFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (11 introns) and 2 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACACGAAACGCATCGAAGGCCCAGGATTACATCACCCCGGTTGAGCAGTCAGAGTCTCCTGATCTTGAGCTCGGAAGACCGGGTTCTCCCAGAAACATGCAGAAGAGTACCTCGCGC
GCGGAGTACGCACTTCAGGCCGTTCGGTGCATCAGTAAGGCGACCGCCACAGATGACGAGAAGAAGTTGTGGGAGAAAGTAGAGCAACGGTTCGTCAAGCTTGCGGACGCTGATTCCATG
TTGCCTCGTTCCAATTTTGCCGAATGCATTGTGGTATGTTCGAAGACCCTCTACATTCCACATCTATCACAAGACATATTCCATATATCTAGTTCTGTGGACAGTGACGGAATTGGAATG
TGTGTTTGCTTGAAGTAACTAATATCGTTGCTACTGCATGTGCACAGGAATGAAGGAATCGAAGGAGTTTGCTAATGAGCTCTTCGATGCGCTGGTTCGTTGCAAAGGCGAGAAGGTGAA
CAGCATCAGCAAACAGGAATTGTACCAGTATTGGTTGGTAATTGCGAACAAAAGCTTCGACGGCCGCATGCAAATGTTCTTCGCCTTTTGTAAATTGCCTAGACCTTGTTCTTTCATACC
TGATCTCACAAAAAATCATCTCATTTCCTCCATATCTTGATCAGTTGAAAATGTGGATTGAGTGAGCCTGACGGAAAAAAACCAAGTTTTCATATCTTTTGATAGGTGTGATAAGGATCT
GGATGGTCGCATCACGGCCGAGGAAGTGAAGCAAGTGATAGTGTTGAGCGCGAGTGCGAACAAGCTGTCTGTATTGAAGGAGCAGGCATCAGAGTACGCTGCGCTTATTATGGAAGAACT
CGACGTGAATCGTAATGGTTACATAGAGAGGTGTGCACTTGAGTTCTTCTCCAATCACTAGCAATTATTTGTTAAGTATCGCACACTCATACGCACACACACACCATTGTTGAAGCTTTA
AGAATGGTTCACCGACAATTCGACTATGTGTGATTGCAGCTGAGTGAGTTTGAGTCACTCATGCGCGGATCTGTGATGGCTGCAAATGGAAAAGAACCAACAGTACAGTATAACCAAATG
TTAAAGCAGAAGAGCAAGCGAACAAAAGTGCAGGATGCCACAGGAAAGGCTAAACACTTCTTGCACGATTACTGGAAGCGGTTGTGGATACTCGCCCTTTGGGTGATGGCCATGACAGGA
CTCTTCACTTGGAAGTTTCTTCAGTATCGGCATCACGAGGCATATGCAGTCATGGGTGAGTGTCTCTGCGTCGCTAAAGGCGCAGCGGAGACACTGAAGCTCAACATGGCCCTCATTCTG
CTGCCTGTATGTCGCAACATGCTCACAAGGCTTCGGTCCACGCGATTAGGCAAGCTCATTCCCTTCGACGAGAATCTCGACTTTCACAAGGCAAAAGTCTCCTTCCTGATCCGGAGCATG
TCAGAGATAGAAAATTCACTAGCAAGTTGGTAAAAAAGCCGTGAGCAGGTTGCTAATAGTCAAATTGTGGCGTCTGAATTGGATTTGCGAAACTGGGCTGTGCAGTGTATCGCTGCAGCT
ATAGCAGTGGGAGTGTTCGTGCATGGAACTCTTCACATAACCTGCGATATCCCAAAATTTGTCAATTGTGACGATGAAAAGTTCTTTGAGGCTCTCGGCGACCAATTCGACAAGCACCCC
ACATACGCTGACATTGCCGTGACGCCAGTGGCAATCACGGGCATTCTCATGGTAGTTCTTATGGCAATCGCCATGCTGCTCGCCACCCACTGGATCCGTCGCAGCTTGGTGAAGTTTCCA
TGGCCGCTGCACCGACTCACGGGATTCAATACATTCTGGTACTCTCACCACTTGTTCGTGATCGTCTACGCGCTTCTCCTGGTCCACTCCATCAAGCTCCTTCTCGCTGGTTCGTGGTAC
AAGCGAACGCGGTATGATTTCTTTTCCAACACCAACATCATCAAAAGTTTCGCAAATTTGATAAGAACTCTACTACTTGACAAATTGTTGAAGGTATCTAACACTGATCTTCGACGGTGT
GCAGATATGGATGTACACTGCCGTCCCCTTGGTTCTGTATGCCAGCGAACGGTTCTTGCGATTGTATCGGACGAATTACAGCAAGGTGGAGGTCGTGAAGAGGTGACGATCAGATCACAA
TTTGATGCATACAAAAACATGGTTCAGCTTCTTACTTTTGCAATGCCTGTCTCACTTCCACTGCAATGGTGGTGTGGTTCTGACGACGATTTGTCTTGTCTGAGCAGGCTGCAGTCTACA
CCGGCAACGTGCTCGCTATCCACATGACGAAACCCGCTGGCTTCAAATACAAAAGTGGCATGTATCTTTTCTTGCAATGCCCCGCAATCTCCTCGTTTGAATGGCACCCATTCTCCATCA
CATCCGCCCCGGATGATCCTTTCCTAAGCGTGCACATCCGCACTTTGGGTGACTGGACTACGGAGATGAGGAAGATCTTCTCTGATTCGTTGGGAGGGAAAACGCGCCTGCAAGCTATCA
ACGATTATGGCCTCAGCGGTGAACTAACTCTGGCTCCAAGAGGTACTCGATCTTTCACCTCCTTACAAACCCTAAGTTGCATGAAAGTGGTTTTCGATATTGAAGCTAAGCAAATTGTTC
CAGCGTTAATCTCTATAATCGGTGTTTGTGCCCAATCGTAGATTTCCGAAGCTGTACATCGATGGTCCTTATGGAGCTCCCGCTCAAGACTACCTCAAGTATGATGTGTTGCTTCTCGTT
GGGCTTGGAATTGGTGCAACTCCATTTATCAGTATCCTCAAGGACATGCTTCATCACAGTAGAAACGATTCAGTTTCTGATCTATAGTACTTAAAGCCCTCCTCTACTCCTGAATTCTGT
CGGTTTAACATCCTTCAGTTTACTTTCTTTTTGCTCCCAAGGCTGCTAGAATTGACTGGAGGTGACTCGCTTTTCTAACTCCAGAGCTCATCCCCTGATTTAAACCCAACTGGAAGTCCT
CCTCCGAAGAAGAAAGCCAAGAGGGACCCTAAGGCATACTTCTACTGGGTCACCCGAGAGCAAGGCTCCTTCGATTGGTTCAGAGGAATTATGCGAGAAGTCGAAGAGATCGACAACAAG
GAGCTCATTGAGATGCACAACTACTTGACAAGCGTGTACGAGGAAGGCGATGCTCGCTCGACGTTGGTCACGATGTTGCAGTCGTTGCACCATGCCAAGAATGGAGTCGACGTCGTTTCA
GGCACTAGGGGGTATGTGAATTGACATCCGTTTCATGTTTGCACCTCAAACCGTCATTCAAACCTTCTGCGATGTACTCATCTCGTTTTGGAGCCCTAATCCAATGCATTAACATGGATT
TTCCCTGATATTTTGCAGGCACGTACCCATTTTGCAAGGCCTAACTGGAAGAACGTTTTCACTAACATGGCCGACACGCATCCAAACAAGCGAATCGCGGTACTGTTCAATCTCCCCCAC
TCGATCTTTGGCTTCGCACCGCCAATTTTTTCCTATTTTTCGTCAACTTCTTCGTCAGTTAAGGGGGTTGAGTCATATAATTTAGGTCTTATCTAAGACTTCCTGTTTTGTGTTTTGCAG

GGGTGTTTTACTGTGGCCCTGCATCACTTGTAAACGAGCTCAAGACTCTATCGAAAGCATTCACAAAGAAGTCCACAAAATTCTTCTTCCACAAAGAAAATTTCTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACACGAAACGCATCGAAGGCCCAGGATTACATCACCCCGGTTGAGCAGTCAGAGTCTCCTGATCTTGAGCTCGGAAGACCGGGTTCTCCCAGAAACATGCAGAAGAGTACCTCGCGC
GCGGAGTACGCACTTCAGGCCGTTCGGTGCATCAGTAAGGCGACCGCCACAGATGACGAGAAGAAGTTGTGGGAGAAAGTAGAGCAACGGTTCGTCAAGCTTGCGGACGCTGATTCCATG
TTGCCTCGTTCCAATTTTGCCGAATGCATTGGAATGAAGGAATCGAAGGAGTTTGCTAATGAGCTCTTCGATGCGCTGGTTCGTTGCAAAGGCGAGAAGGTGAACAGCATCAGCAAACAG
GAATTGTACCAGTATTGGTTGGTAATTGCGAACAAAAGCTTCGACGGCCGCATGCAAATGTTCTTCGCCTTGTGTGATAAGGATCTGGATGGTCGCATCACGGCCGAGGAAGTGAAGCAA
GTGATAGTGTTGAGCGCGAGTGCGAACAAGCTGTCTGTATTGAAGGAGCAGGCATCAGAGTACGCTGCGCTTATTATGGAAGAACTCGACGTGAATCGTAATGGTTACATAGAGCTGAGT
GAGTTTGAGTCACTCATGCGCGGATCTGTGATGGCTGCAAATGGAAAAGAACCAACAGTACAGTATAACCAAATGTTAAAGCAGAAGAGCAAGCGAACAAAAGTGCAGGATGCCACAGGA
AAGGCTAAACACTTCTTGCACGATTACTGGAAGCGGTTGTGGATACTCGCCCTTTGGGTGATGGCCATGACAGGACTCTTCACTTGGAAGTTTCTTCAGTATCGGCATCACGAGGCATAT
GCAGTCATGGGTGAGTGTCTCTGCGTCGCTAAAGGCGCAGCGGAGACACTGAAGCTCAACATGGCCCTCATTCTGCTGCCTGTATGTCGCAACATGCTCACAAGGCTTCGGTCCACGCGA
TTAGGCAAGCTCATTCCCTTCGACGAGAATCTCGACTTTCACAAGGCAACTATAGCAGTGGGAGTGTTCGTGCATGGAACTCTTCACATAACCTGCGATATCCCAAAATTTGTCAATTGT
GACGATGAAAAGTTCTTTGAGGCTCTCGGCGACCAATTCGACAAGCACCCCACATACGCTGACATTGCCGTGACGCCAGTGGCAATCACGGGCATTCTCATGGTAGTTCTTATGGCAATC
GCCATGCTGCTCGCCACCCACTGGATCCGTCGCAGCTTGGTGAAGTTTCCATGGCCGCTGCACCGACTCACGGGATTCAATACATTCTGGTACTCTCACCACTTGTTCGTGATCGTCTAC
GCGCTTCTCCTGGTCCACTCCATCAAGCTCCTTCTCGCTGGTTCGTGGTACAAGCGAACGATATGGATGTACACTGCCGTCCCCTTGGTTCTGTATGCCAGCGAACGGTTCTTGCGATTG
TATCGGACGAATTACAGCAAGGTGGAGGTCGTGAAGGCTGCAGTCTACACCGGCAACGTGCTCGCTATCCACATGACGAAACCCGCTGGCTTCAAATACAAAAGTGGCATGTATCTTTTC
TTGCAATGCCCCGCAATCTCCTCGTTTGAATGGCACCCATTCTCCATCACATCCGCCCCGGATGATCCTTTCCTAAGCGTGCACATCCGCACTTTGGGTGACTGGACTACGGAGATGAGG
AAGATCTTCTCTGATTCGTTGGGAGGGAAAACGCGCCTGCAAGCTATCAACGATTATGGCCTCAGCGGTGAACTAACTCTGGCTCCAAGATTTCCGAAGCTGTACATCGATGGTCCTTAT
GGAGCTCCCGCTCAAGACTACCTCAAGTATGATGTGTTGCTTCTCGTTGGGCTTGGAATTGGTGCAACTCCATTTATCAGTATCCTCAAGGACATGCTTCATCACAGTAGAAACGATTCA
GTTTCTGATCTAAGCTCATCCCCTGATTTAAACCCAACTGGAAGTCCTCCTCCGAAGAAGAAAGCCAAGAGGGACCCTAAGGCATACTTCTACTGGGTCACCCGAGAGCAAGGCTCCTTC
GATTGGTTCAGAGGAATTATGCGAGAAGTCGAAGAGATCGACAACAAGGAGCTCATTGAGATGCACAACTACTTGACAAGCGTGTACGAGGAAGGCGATGCTCGCTCGACGTTGGTCACG
ATGTTGCAGTCGTTGCACCATGCCAAGAATGGAGTCGACGTCGTTTCAGGCACTAGGGCACGTACCCATTTTGCAAGGCCTAACTGGAAGAACGTTTTCACTAACATGGCCGACACGCAT
CCAAACAAGCGAATCGGGGTGTTTTACTGTGGCCCTGCATCACTTGTAAACGAGCTCAAGACTCTATCGAAAGCATTCACAAAGAAGTCCACAAAATTCTTCTTCCACAAAGAAAATTTC
TAA

Retrieve as FASTA