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Entry information : SmPrx08-1_40 (SmPrx08a_40)
Entry ID 6202
Creation 2008-06-30 (Christophe Dunand)
Last sequence changes 2008-06-30 (Christophe Dunand)
Sequence status complete
Reviewer Paula Nunes
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmPrx08-1_40 (SmPrx08a_40)
Name (synonym) SmPrx08-1_40 (SmPrx08a_40)
Class Class III peroxidase    [Orthogroup: Prx110]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx08-1_40
start..stop		 S start..stop
SmPrx08-2_107 659 0 1..328 1..326
CmichPrx06 403 8.73e-142 6..328 7..329
GbPrx24 394 3.58e-138 27..328 28..328
ApuncPrx04 395 4.85e-138 29..328 70..371
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '6202' 'complement(join(1683823..1684229,1684708..1684873,1685142..1685330,1685419..1685643))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1685419..1685643 223 N° 2 1685142..1685330 187 N° 3 1684708..1684873 164 N° 4 1683823..1684229 405
complement(join(1683823..1684229,1684708..1684873,1685142..1685330,1685419..1685 643))


exon

Literature and cross-references SmPrx08-1_40 (SmPrx08a_40)
Literature JGI
DNA ref. Phytozome 12:   scaffold_40 (1685643..1683823)
mRNA ref. JGI transcript:   233332
Protein sequence: SmPrx08-1_40 (SmPrx08a_40)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   328 (301)
PWM (Da):   %s   35369 (32570.4)  
PI (pH):   %s   8 (7.72) Peptide Signal:   %s   cut: 28 range:28-328
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MLSIGAALAKIWLVIALGASIWPASHQQQLDSNFYRSRCPALEPI
SATAVARQIRKDPTSAAPLVRMFFHDCFVQGCDASVLLDSTKNSTAEKEATPNVSLRQFDVLEEIKTQVEAKCPGVVSCADIVALAARDATVQTGGPSWNVEFGRRDGRSSSDAMAAAHLPSSRSSAQPLIDSFAAVGLSIRDLVTLSGA
HTFGRAHCTQVARRFYAFNNASGIDPTLDSSYAQRLRRLCPQPLDAHGMVDLDPITPNVFDTLYYQGLLMNLGIFSSDSALVLDNRTKVFVQEYAVNPVSFVQQFPGAMVRLGRIGVLTG
SQGEIRKRCNVVN

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns). Contig also contains SmPrx07a. No EST.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTATCGATCGGAGCGGCATTGGCGAAGATTTGGCTGGTAATCGCGCTGGGAGCGTCGATCTGGCCAGCGTCCCATCAGCAGCAGCTGGATTCCAATTTCTATCGCTCGCGATGCCCC
GCGCTGGAGCCGATCTCCGCCACGGCCGTGGCGCGGCAGATTAGGAAGGATCCGACCTCCGCCGCGCCGCTCGTCCGGATGTTCTTCCACGATTGCTTCGTCCAGGCAAGGCGCACTCGT
ATTTCGATCGATCGATCGGCGAAATATTTTGGTCTGACATGTTTTGCGCGTGTTCTTGTTTCTTTCTTGACAGGGGGTTGCGATGCGTCAGTGCTACTAGATTCGACCAAGAACAGCACG
GCCGAGAAGGAGGCAACGCCAAACGTATCGCTGCGCCAATTCGATGTCCTGGAGGAGATCAAGACGCAGGTGGAGGCCAAATGTCCGGGAGTGGTTTCTTGCGCCGACATTGTGGCGCTG
GCCGCTAGAGATGCCACAGTCCAGGTACGCGAATCGATTCTAGCTCATCGATCGAAATTCGCGAAGATTTCCCTCTTCTTGTTCTTGGTTCTCTTTCTCTCTCTTGCTCACGCTCGGGAA
AAGGGAAAGGATGATTCCGTCGTGCTTCTCGTGATGCCAGCCAAATTCATCTCTCACGCGCTCGATTTCTTGGAAAGATCGTTCCATTCCTTGCCTGCATTGATTGATTGTCATGAGCAT
CGGCATCGCAGCTTTAAAAATTCACTCTTCTTCCTCGTTTGCTCCTTGGCAGACACTGGAGGACCGAGCTGGAACGTGGAATTCGGGCGGAGGGATGGGCGGAGCTCGTCCGACGCGATG
GCTGCCGCGCATTTACCATCGTCGCGATCCAGCGCCCAGCCTCTCATCGACAGCTTCGCGGCGGTGGGGCTGTCAATCCGGGATCTGGTGACTCTATCAGGTACTCTGTTCTTCCCCTGG
CTCGTGATGTCATACTCCATGTCATAGCCCTGGCTTTTTCCCTGGGTTTTGGTTCCCGTTATGTCATAGTCCCTGGTTTTGGTCTCCGAACATGTCATAACCCCCCAGGTTCTAGTCCAC
GTGTTCTTAAAGTTGCTGTGCCCGAATCCTTTGTCCTGTCTCCTTCACTGCAATGCCTGACTGAATTCTCGCTGTCACTAGTTACCACTGTCATCCACTGGAAGACATTGGAGAGTTCTG
TCTGAGGTAAATGTTTGTTTCTTATCCCTTCGCCACTCATTGTTCTACTCGATTTGACTGGCATTTGTTCTGGAGCTCTGGAGCTCTGCGTAGCGTAGGATCTTCTTTGGACTAGACAAT
CCAAGTTGCGTGACTTGATCGACTTGATCGATCGATCGAACGCGCTCCTGGAATGGTTTTTTATTCTCGTCCTTTCTCATACTTTCTCTCTTTTGCAGGAGAGCTCATACTTTTGGACGA
GCGCACTGCACCCAAGTGGCGCGTCGCTTCTATGCTTTCAACAACGCCAGCGGCATCGATCCCACGCTCGACTCCAGCTACGCGCAGCGGCTCCGGCGGCTGTGCCCGCAGCCGTTGGAT
GCCCACGGAATGGTCGACCTGGATCCAATCACGCCCAACGTCTTCGACACGCTCTACTACCAGGGACTGCTCATGAACCTGGGGATATTCTCCTCCGATTCCGCGCTCGTTCTGGACAAC
CGGACGAAGGTGTTCGTGCAGGAATATGCGGTCAACCCAGTCTCGTTCGTTCAACAGTTTCCGGGCGCCATGGTCAGACTTGGTCGCATTGGTGTGTTGACCGGCAGTCAAGGTGAGATT
AGAAAAAGATGTAACGTGGTCAACTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTATCGATCGGAGCGGCATTGGCGAAGATTTGGCTGGTAATCGCGCTGGGAGCGTCGATCTGGCCAGCGTCCCATCAGCAGCAGCTGGATTCCAATTTCTATCGCTCGCGATGCCCC
GCGCTGGAGCCGATCTCCGCCACGGCCGTGGCGCGGCAGATTAGGAAGGATCCGACCTCCGCCGCGCCGCTCGTCCGGATGTTCTTCCACGATTGCTTCGTCCAGGGTTGCGATGCGTCA
GTGCTACTAGATTCGACCAAGAACAGCACGGCCGAGAAGGAGGCAACGCCAAACGTATCGCTGCGCCAATTCGATGTCCTGGAGGAGATCAAGACGCAGGTGGAGGCCAAATGTCCGGGA
GTGGTTTCTTGCGCCGACATTGTGGCGCTGGCCGCTAGAGATGCCACAGTCCAGACTGGAGGACCGAGCTGGAACGTGGAATTCGGGCGGAGGGATGGGCGGAGCTCGTCCGACGCGATG
GCTGCCGCGCATTTACCATCGTCGCGATCCAGCGCCCAGCCTCTCATCGACAGCTTCGCGGCGGTGGGGCTGTCAATCCGGGATCTGGTGACTCTATCAGGAGCTCATACTTTTGGACGA
GCGCACTGCACCCAAGTGGCGCGTCGCTTCTATGCTTTCAACAACGCCAGCGGCATCGATCCCACGCTCGACTCCAGCTACGCGCAGCGGCTCCGGCGGCTGTGCCCGCAGCCGTTGGAT
GCCCACGGAATGGTCGACCTGGATCCAATCACGCCCAACGTCTTCGACACGCTCTACTACCAGGGACTGCTCATGAACCTGGGGATATTCTCCTCCGATTCCGCGCTCGTTCTGGACAAC
CGGACGAAGGTGTTCGTGCAGGAATATGCGGTCAACCCAGTCTCGTTCGTTCAACAGTTTCCGGGCGCCATGGTCAGACTTGGTCGCATTGGTGTGTTGACCGGCAGTCAAGGTGAGATT
AGAAAAAGATGTAACGTGGTCAACTGA

Retrieve as FASTA