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Entry information : SmAPx04-2_36 (SmAPx04b_36)
Entry ID 7201
Creation 2010-02-10 (Christophe Dunand)
Last sequence changes 2010-02-10 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmAPx04-2_36 (SmAPx04b_36)
Name (synonym) SmAPx04-2_36 (SmAPx04b_36)
Class Ascorbate peroxidase    [Orthogroup: APx2002]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmAPx04-2_36
start..stop		 S start..stop
SmAPx04-1_7 830 0 1..407 1..407
EglAPx08 540 0 39..403 72..443
EguAPx08 539 0 39..403 72..443
CsAPx05 538 0 54..405 36..392
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1259197..1259325 127 N° 2 1259374..1259529 154 N° 3 1259582..1259702 119 N° 4 1259756..1259856 99
N° 5 1259901..1259988 86 N° 6 1260045..1260112 66 N° 7 1260161..1260247 85 N° 8 1260301..1260375 73
N° 9 1260425..1260502 76 N° 10 1260573..1260677 103 N° 11 1260725..1260784 58 N° 12 1260836..1260991 154
join(1259197..1259325,1259374..1259529,1259582..1259702,1259756..1259856,1259901 ..1259988,1260045..1260112,1260161..1260247,1260301..1260375,1260425..1260502,12 60573..1260677,1260725..1260784,1260836..1260991)


exon

Literature and cross-references SmAPx04-2_36 (SmAPx04b_36)
DNA ref. Phytozome 12:   scaffold_36 (1259197..1260991)
mRNA ref. JGI transcript:   108251 [Incorrect prediction]
EST ref. GenBank:   FE471758.1 [5' end]  FE457086.1 [3' end]
Cluster/Prediction ref. UniGene:   Smo.1505
Protein sequence: SmAPx04-2_36 (SmAPx04b_36)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   407 (270)
PWM (Da):   %s   44574.17 (29209.3) Transmb domain:   %s   o384-406i
PI (pH):   %s   9.25 (4.63) Peptide Signal:   %s   cut: 26 range:26-295
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MALSLADARVPAWDVRAGVAPSKKNAAVKREFKSNFFQSSAVAKVATIAPRKLRRRALVISNSSSTSVKLSANDLEEAKLAVKELVQNTHSNPILIRLGWHDAGTYNKDIKEWPKCGGANGSIRFTKEMGHAANAGLQGALKLLDPIKDKFPAISYADLFQLA
SVTAILAGGPKIPMRYGRVDTTTPEECPEEGMLPDAGAPSPAEHLRKVFYRMGFNDEIVALSGAHTLGRARPNRSGWGKDETKYTKDGPGLPGGQSWTVHWLKFDNSYFREVKEKRDAEL
LVLPTDAALFEDPSFKVYAEKYAEDQETFFKDYAEAHAKLSELGAKFDPPEGITLEAAPQKFVAAEYSTPKKELSDSMKQKIRAEYLGLGGSPEQPLKTNYFLNIIVIIAVLAILTWLFG
GF*

Retrieve as FASTA  
Remarks Completes sequence from genomic (11 introns) and 8 ESTs. ESTs from the two are compiled in the same unigene. Incorrect prediction from JGI (first exon is incorrectly predicted)
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCTATCTTTAGCTGACGCTAGAGTTCCAGCTTGGGATGTGCGAGCCGGAGTCGCGCCCAGCAAGAAGAATGCGGCTGTCAAGCGAGAATTTAAGTCGAATTTCTTTCAGTCATCC
GCTGTGGCGCGGTAAGATTTTTCTTCGTTTCTTCTGCCTCTCAGTGTAGAGTGGTGCAGAAAGTAGCAACGATTGCTCCAAGAAAACTTCGGCGGAGAGCACTAGTGATCAGTAACAGTT
CTTCGACGTCAGTCAAGCTATCAGCGAATGATCTCGAAGAAGCCAAATTGGCGGTGAAGGAGCTCGTCCAAAATACGCATAGCAATCCAATCCTGTGGTAAAGTTTCTTCGAGAAATTTC
ATTGTCACCTTCTTTGGTTTCGTTTGTAGATTCGCTTGGGGTGGCATGACGCAGGAACTTATAACAAAGATATCAAAGAGTGGCCAAAATGCGGTGGTGCAAATGGGAGTATACGATTTA
CGAAGGAGATGGGTCACGCTGCCAATGCCGCGGTACTGCCTTGTTCGTTTCAACTTACTTTTGAACTGGGTGAATGTATTGTCAGGCCTCCAAGGCGCACTGAAACTTCTGGATCCTATC
AAAGATAAATTCCCTGCGATAAGCTATGCAGATTTGTTCCAACTTGCGAGCGTCACTGCGATAGAGAGGTAACCCCCGTTTATGAAACATGCTGTTATTCAAGTTATTGCAGCTAGCGGG
AGGTCCTAAAATACCGATGCGATACGGAAGAGTGGATACGACTACTCCAGAAGAATGTCCGGAAGAAGGAATGCTTCCTGTGGTTCGTAAAATTCTTTCTAACAACTGTGCGTTTTTACA
TTTAATCTTTTTCTTTAGATGCTGGAGCTCCAAGTCCTGCCGAACATCTTCGGAAGGTATTTTACAGAATGGGGTTTAACGACAAGAGGTACATAGATCATAGATAGAGAACTTTAGTTG
TTTACATGTTGAACAGGAAATTGTTGCTTTATCGGGTGCTCACACGCTCGGCAGGGCTCGGCCGAATAGAAGTGGATGGGGCAAAGATGAAACCAAATATACACAGTAATGTAGCATCTA
CTACGTGTTCTTACTAAACAGTGAATCATTTTATGCAGAAAGATGGTCCAGGACTACCTGGCGGGCAGTCATGGACCGTACATTGGCTGAAGTTTGACAACTCCTATTTCAGGGGGTATG
CCTTTACCTTGGTTCTGATCACAATAATCCTCTCGGAGGTGTAGGAAGTAAAAGAGAAACGAGATGCAGAATTACTTGTACTGCCAACGGATGCGGCTCTCTTTGAGGATCCCAGCTTTA
AGAGGTGCGGAATGTGCTTCACAGTTCAGTTTCTACTTCATGAAAACGGTCTGAGTTTATAAAGTTGGAGGCAGGTGTATGCTGAAAAGTATGCAGAGGATCAAGAAACTTTCTTCAAAG
ACTACGCAGAAGCTCATGCCAAACTTAGTGAGCTAGGTGCTAAATTCGATCCACCCGAGAGGTAAATGATCTAGTTTTTGAGAAAACTTTACAATACTCTCACTGCAGGGCATTACGCTT
GAGGCTGCTCCTCAAAAGTTCGTTGCTGCCGAATACTCAACTCCGAAGAGGTGCCTTTTCTTACTTGGCTGTATGCACCGACCATCATCTGTTGTTTGCAGAAAGAGCTCTCTGATTCCA
TGAAGCAGAAAATCCGTGCTGAATACCTTGGGCTTGGTGGAAGTCCAGAGCAGCCTTTGAAGACAAACTACTTTCTGAACATTATAGTCATCATTGCGGTTCTTGCTATTCTGACGTGGC
TATTCGGTGGGTTTTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCTATCTTTAGCTGACGCTAGAGTTCCAGCTTGGGATGTGCGAGCCGGAGTCGCGCCCAGCAAGAAGAATGCGGCTGTCAAGCGAGAATTTAAGTCGAATTTCTTTCAGTCATCC
GCTGTGGCGAAAGTAGCAACGATTGCTCCAAGAAAACTTCGGCGGAGAGCACTAGTGATCAGTAACAGTTCTTCGACGTCAGTCAAGCTATCAGCGAATGATCTCGAAGAAGCCAAATTG
GCGGTGAAGGAGCTCGTCCAAAATACGCATAGCAATCCAATCCTGATTCGCTTGGGGTGGCATGACGCAGGAACTTATAACAAAGATATCAAAGAGTGGCCAAAATGCGGTGGTGCAAAT
GGGAGTATACGATTTACGAAGGAGATGGGTCACGCTGCCAATGCCGGCCTCCAAGGCGCACTGAAACTTCTGGATCCTATCAAAGATAAATTCCCTGCGATAAGCTATGCAGATTTGTTC
CAACTTGCGAGCGTCACTGCGATAGAGCTAGCGGGAGGTCCTAAAATACCGATGCGATACGGAAGAGTGGATACGACTACTCCAGAAGAATGTCCGGAAGAAGGAATGCTTCCTGATGCT
GGAGCTCCAAGTCCTGCCGAACATCTTCGGAAGGTATTTTACAGAATGGGGTTTAACGACAAGGAAATTGTTGCTTTATCGGGTGCTCACACGCTCGGCAGGGCTCGGCCGAATAGAAGT
GGATGGGGCAAAGATGAAACCAAATATACAAAAGATGGTCCAGGACTACCTGGCGGGCAGTCATGGACCGTACATTGGCTGAAGTTTGACAACTCCTATTTCAGGGAAGTAAAAGAGAAA
CGAGATGCAGAATTACTTGTACTGCCAACGGATGCGGCTCTCTTTGAGGATCCCAGCTTTAAGGTGTATGCTGAAAAGTATGCAGAGGATCAAGAAACTTTCTTCAAAGACTACGCAGAA
GCTCATGCCAAACTTAGTGAGCTAGGTGCTAAATTCGATCCACCCGAGGGCATTACGCTTGAGGCTGCTCCTCAAAAGTTCGTTGCTGCCGAATACTCAACTCCGAAGAAAGAGCTCTCT
GATTCCATGAAGCAGAAAATCCGTGCTGAATACCTTGGGCTTGGTGGAAGTCCAGAGCAGCCTTTGAAGACAAACTACTTTCTGAACATTATAGTCATCATTGCGGTTCTTGCTATTCTG
ACGTGGCTATTCGGTGGGTTTTAG

Retrieve as FASTA