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Entry information : SbAPx06 (Sobic.008G057900.1 [2.1] / Sb08g004880 [1.4])
Entry ID 7417
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2010-06-03 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbAPx06 (Sobic.008G057900.1 [2.1] / Sb08g004880 [1.4])
Name (synonym) SbAPx06 (Sobic.008G057900.1 [2.1] / Sb08g004880 [1.4])
Class Ascorbate peroxidase    [Orthogroup: APx2002]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbAPx06
start..stop		 S start..stop
SiAPx06 598 0 1..313 1..311
TaAPx03-1D 587 0 1..313 1..313
TaAPx03-1B 587 0 1..313 1..313
TaAPx03-1A 586 0 1..313 1..312
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 6062793..6062876 82 N° 2 6062968..6063084 115 N° 3 6063519..6063639 119 N° 4 6063713..6063813 99
N° 5 6063919..6064006 86 N° 6 6065163..6065230 66 N° 7 6065316..6065402 85 N° 8 6065888..6065962 73
N° 9 6066038..6066115 76 N° 10 6066204..6066308 103 N° 11 6066395..6066412 16  
join(6062793..6062876,6062968..6063084,6063519..6063639,6063713..6063813,6063919 ..6064006,6065163..6065230,6065316..6065402,6065888..6065962,6066038..6066115,60 66204..6066308,6066395..6066412)


exon

Literature and cross-references SbAPx06 (Sobic.008G057900.1 [2.1] / Sb08g004880 [1.4])
DNA ref. Phytozome 12:   chromosome_8 (6062793..6066412)
Protein sequence: SbAPx06 (Sobic.008G057900.1 [2.1] / Sb08g004880 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   313 (304)
PWM (Da):   %s   33935.42 (33167.8)  
PI (pH):   %s   7.71 (9.34) Peptide Signal:   %s   cut: 26 range:26-329
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAVHHLLRRGVSSGSPIHPLRGLFLASKELGRHPLSSAAAGDAAAELRSAREDVRQLLKATSCHPILVRLGWHDAGTYDKNIPEWPKCGGANGSLRFEVELKHGANAGLVNALKLIQSIKDKFSGVTYADLFQLASATAIEAGGPKIP
MIYGRVDVTAPEQCPPEGRLPAAGPPSPAEHLREVFYRMGLNDEIVALSGAHTLGRARPERSGWGKPETKYTKDGPGAPGGQSWTSQWLKFDNSYFKAIKERRDEDLLVLPTDAVLFEDS
SFKIYAEKYATDQDAFFEDYAEAHAKLSNLGAKFDPPKGISLE*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 8, 10 introns) and 9 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGTCCACCACCTTCTCCGCCGCGGGGTCTCCAGCGGCTCACCGATCCACCCTCTCCGCGGCCTCTTCCTCGCCTCCAAGAGGTACCTGCGGCTCCTCCCCTCGCCCTTACCCACT
GCCCTCGCCGTCACACCGGTCCTTGATTTCGTGCGTGCTTCTTTCCCGGCGGCGCAGGAGCTTGGGCGGCACCCGTTGAGCTCGGCGGCGGCGGGAGACGCAGCGGCCGAGCTGAGGAGC
GCGCGGGAGGACGTCAGGCAGCTGCTCAAGGCAACCTCCTGCCATCCCATCCTGTGGTACGGTAGTTCTTTCTCCTCGTGCCGAGGCTCCCTGCGGTTGGAGCAGACAAGTGATTGTACT
GTGGGATCTTGTTTATTCATCTAGCCACCCAGAGATTCTGCATCTCTACAAAGTCTCTCTCATGTTTTCGTTCAATTGATGAAATAATAATACTCTGCAACCTTTTGTTTTGGGTAAGGA
AGGAACTCGGTCGATTTAGTTGGCCATATTTTTACTCAGCTGACCACACATCAGTTTATGCAACAGAGTTAGCTTTGGGAGATGTATTAGTGCCCCAAATGCACTGTTCTTTCTGTTTAT
GCTAGATTAATTTTGGTATTTTTGCTTGTGTGCACATTACTGTTTTCCTCTTCGCGAATCGCAATCCAGCATTAGCTGCTTCAGCCTCCGGGTTGCTTAGATACGACTTACGAGTTATAT
TTTTGTTCAGGTTCGATTAGGTTGGCATGATGCTGGTACCTATGACAAGAACATTCCTGAGTGGCCCAAGTGCGGTGGAGCTAATGGTAGCTTGAGATTTGAAGTCGAGTTAAAACATGG
GGCCAATGCTGTGGTAAAGCTTCTTCTCAATCGATTAACTGTAACTTCATGATGAGGGGATACTCTTACATTTAGTTTCATAACAGGTCTTGTGAATGCTCTGAAGCTGATCCAATCGAT
CAAGGACAAGTTTTCAGGTGTTACGTATGCAGATCTGTTTCAGCTTGCCAGCGCCACAGCCATTGAGAGGTCCCTTAAAATTGCTCCAGCTTGCCAATGATTAGGTGATATTTATTCATA
AATTGTTTCTTGTTAATGACAACTGACTGGTTGTTCTGGTTTCTTTCATTTCAGGAAGCAGGTGGCCCCAAAATTCCGATGATCTATGGAAGGGTTGACGTTACTGCCCCTGAACAATGC
CCACCAGAGGGGAGGCTTCCTGTGGTCAGTAATAATGAATTTTTGACCGATCTTAACTCATATACCATAGTGCCAATTTATGTTGAGTCTGACTCAGAATCCAGAACCTAGAACATAGGG
TTGTTCCTTGAGTTTCATTTGATTGATGTTAATCCAAGCATACTCTTACAATCATTGCTTAGTGATTGAAACACCGAATCGGTATCTGATTCATTAACCTTTGTATGGTTGTGCTCAGAG
TTCCACCACATAGCAAACTTTCAGCTAACTCCCCGATTAAAACATCGATACCTATCTCTTATCAAATCATTATCATATTTAAACCCATAGATGACTTGTATTTGCTTGCTTAGTTGTTCA
TGAAAGTTTGGCATGTTAGCACACTGGCAGCTTTCAACAGATTAATATTACCAAAGTTTATGATCCATGTCACAGAAAATATACTTTGTCCTAGTCCTGGACATCATCCACTTTAAGCTG
AGACACATCCTATCAGATTTATGGTACCTAATGTTTATTTGTCTTCAAGGTGCAAATTTGGCACACCAAAAACTAAAATACAAACAAAATGCTGATGCAATATTGGAAGTAGAGGATGTA
AATACAGCCCTGGCTAACTTTAATGGTATCCCTTTTCATTCCACCAGTGTTTGTTGGGTTATCTGTAGTGCCTCCAAATTCAGCTTTTGAGATGCTTAGGACAGATTAATCTATATTCTT
TTGGAATTTAATTAGTAAGATATGAAGGTAGAAACAAGCTAAAGTCATAGAACAGTGTTATGTGATCTGTAAAGCATAAGTCTTTTTAAAGAATTACCTTTGTGGGATTTACAGTCTGGT
CAAATCAAATGGCTGAACATGCAGAGTGCACAGGGTAAATTGTTTCAAGTTCCCACATCCTACAATGTAACAAAATATTGAGAAGCTGCGCTACCTAGAATAGAATCATGTTCATACAGT
TGTCTTATGGTCATAGAATTCAAAATGACACTGCACATTATCTTCCTAAGCATTGCAATTTTCTTGTTTCAAACACCCCTATCCAGTGGTTCCTGATTGATCTCTTCATGCCATATAATT
ATTTAAGTTGACAGTTCAACACTATACTGCCAATGCTTTGTTTCTGTACAGAAGATTTTATTCCAAGGTTACTCATATTTCTATTTTCTCACCCATGCAGCTGCTGGCCCACCTTCACCT
GCGGAACATTTGCGTGAAGTATTCTACAGAATGGGCCTGAATGACAAGAGGTGTGAAGTGTGAACTGAATGCTGTGTTTAAATTAGACTCGGCATAATTCTATATTTGCTAGTTACAACT
ATTTCCGTTCTGTAGGAAATTGTTGCACTGTCAGGAGCTCATACACTTGGACGGGCAAGACCAGAGCGTAGTGGCTGGGGTAAACCAGAAACAAAGTACACTCTGTATGTAACCTACAGA
TTTAATCATGTGCTGTCCTTTTTTTCAGTTATTGCATTTGCATGCCTGTCCCTGTCCTTCATAATTTACTTATTATATTAGGGAGTAAAATGTGAGTGTAACCAGTATTTTTTATTCGTG
CTAGACTGCTAGTTAATTTCTTGTTTGGCTTTGTCCTACTGATTGGTCCTTGCTTATACATTTGCTGCATGGACACCATATTTGATTACTTGTCTGTGCTGTTATCTGATAAGACATTAT
TGTCTACTCTGCCCGCTTTTCACTATATTGTGGTGTGTCTGCTAGCTTTCTCCTCTATGGATCTTATCTATATTCTCTCCACCATTATTCTTGTAAAGATGCTCTTTGTGTGATTAGTAC
ACTAATAGCACCTTCACATTTATACAGTCTTGTTTGCTGAATGGTGATGGAGTGGTGTTACCTCACTCATTTGTTAATTGTTCTTTTGTTTGATACTTTGATATGCCAGAAAGATGGACC
TGGTGCACCTGGGGGGCAATCTTGGACATCTCAATGGCTCAAGTTTGACAACAGCTATTTCAAGAGGTATTGTCCATAAGTTTGCCATAGGATACCTTTCAATCATGTAGCTTTAACAAA
AATGTGGGCATAACAATTCAGGCTATCAAAGAAAGGCGAGATGAGGACCTCCTAGTTCTGCCTACTGACGCTGTGCTGTTTGAGGATTCCTCATTCAAGAGGTTAGTGAAGGTCCTCATG
TTGCAAAAAACTGCACATATCTAGCTTTTCTCTTGGACCAAGTCTCATGATGACTTTTCATACTTGAAGATCTATGCTGAGAAATACGCCACGGATCAGGATGCATTTTTCGAGGACTAT
GCTGAAGCTCATGCCAAATTAAGCAATCTTGGGGCAAAATTTGACCCGCCAAAGAGGTAAAAGGATTCATGACACTTTCCAGTCTTGAGAGGTGGTCAGGTACTCAGGTCATGTAACATG
CTTTTCATTGAAATGTTTGCAGGGCATCTCACTTGAGTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGTCCACCACCTTCTCCGCCGCGGGGTCTCCAGCGGCTCACCGATCCACCCTCTCCGCGGCCTCTTCCTCGCCTCCAAGGAGCTTGGGCGGCACCCGTTGAGCTCGGCGGCGGCG
GGAGACGCAGCGGCCGAGCTGAGGAGCGCGCGGGAGGACGTCAGGCAGCTGCTCAAGGCAACCTCCTGCCATCCCATCCTGGTTCGATTAGGTTGGCATGATGCTGGTACCTATGACAAG
AACATTCCTGAGTGGCCCAAGTGCGGTGGAGCTAATGGTAGCTTGAGATTTGAAGTCGAGTTAAAACATGGGGCCAATGCTGGTCTTGTGAATGCTCTGAAGCTGATCCAATCGATCAAG
GACAAGTTTTCAGGTGTTACGTATGCAGATCTGTTTCAGCTTGCCAGCGCCACAGCCATTGAGGAAGCAGGTGGCCCCAAAATTCCGATGATCTATGGAAGGGTTGACGTTACTGCCCCT
GAACAATGCCCACCAGAGGGGAGGCTTCCTGCTGCTGGCCCACCTTCACCTGCGGAACATTTGCGTGAAGTATTCTACAGAATGGGCCTGAATGACAAGGAAATTGTTGCACTGTCAGGA
GCTCATACACTTGGACGGGCAAGACCAGAGCGTAGTGGCTGGGGTAAACCAGAAACAAAGTACACTAAAGATGGACCTGGTGCACCTGGGGGGCAATCTTGGACATCTCAATGGCTCAAG
TTTGACAACAGCTATTTCAAGGCTATCAAAGAAAGGCGAGATGAGGACCTCCTAGTTCTGCCTACTGACGCTGTGCTGTTTGAGGATTCCTCATTCAAGATCTATGCTGAGAAATACGCC
ACGGATCAGGATGCATTTTTCGAGGACTATGCTGAAGCTCATGCCAAATTAAGCAATCTTGGGGCAAAATTTGACCCGCCAAAGGGCATCTCACTTGAGTAG

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CCTACTGGAT TGCTATTGGT CCATGGTTCC ATTCCCTTCT CCAGCCTCCA CTGACGCGGA CCATTCTTCC TCTAAACCCC TCCTCTCCCC CGCCGCCGGT GCACCGACAT GGCCGTCCAC  CACCTTCTCC GCCGCGGGGT CTCCAGCGGC TCACCGATCC ACCCTCTCCG CGGCCTCTTC CTCGCCTCCA AGGAGCTTGG GCGGCACCCG TTGAGCTCGG CGGCGGCGGG AGACGCAGCG  GCCGAGCTGA GGAGCGCGCG GGAGGACGTC AGGCAGCTGC TCAAGGCAAC CTCCTGCCAT CCCATCCTGG TTCGATTAGG TTGGCATGAT GCTGGTACCT ATGACAAGAA CATTCCTGAG  TGGCCCAAGT GCGGTGGAGC TAATGGTAGC TTGAGATTTG AAGTCGAGTT AAAACATGGG GCCAATGCTG GTCTTGTGAA TGCTCTGAAG CTGATCCAAT CGATCAAGGA CAAGTTTTCA  GGTGTTACGT ATGCAGATCT GTTTCAGCTT GCCAGCGCCA CAGCCATTGA GGAAGCAGGT GGCCCCAAAA TTCCGATGAT CTATGGAAGG GTTGACGTTA CTGCCCCTGA ACAATGCCCA  CCAGAGGGGA GGCTTCCTGC TGCTGGCCCA CCTTCACCTG CGGAACATTT GCGTGAAGTA TTCTACAGAA TGGGCCTGAA TGACAAGGAA ATTGTTGCAC TGTCAGGAGC TCATACACTT  GGACGGGCAA GACCAGAGCG TAGTGGCTGG GGTAAACCAG AAACAAAGTA CACTAAAGAT GGACCTGGTG CACCTGGGGG GCAATCTTGG ACATCTCAAT GGCTCAAGTT TGACAACAGC  TATTTCAAGG CTATCAAAGA AAGGCGAGAT GAGGACCTCC TAGTTCTGCC TACTGACGCT GTGCTGTTTG AGGATTCCTC ATTCAAGATC TATGCTGAGA AATACGCCCC GGATCAGGAT  GCATTTTTCG AGGACTATGC TGAAGCTCAT GCCAAATTAA GCAATCTTGG GGCAAAATTT GACCCGCCAA AGGGCATCTC ACTTGAGTAG ATGTGGATGA AGGCGACTCG ACAGGGTCAT  GTTCCTTTGC ACGACCATTT TCGAAGGTTT TGCATGGAAA ACTTGTTCGA GTTCATTGAC GGCCCCAGAA GAAGGATTCA CTGATTAAAG GAAGATTTTT GTGCTGAGCA TGCTCTATTT  GAGTAGTATG CTACACTAGA ATAAAGAGGC ATCCGTCATT TCAGGATAAA TATTTGTCAC ACTAACCGAC GTTTACCTTG GTTGCATGGT ACTGCATTCA GCTTACCAAA TGAATGTTCC  CACCGAATTG AACCAAATTT TGTTCTTCCA TGTGTCCTGT TTGTCATTTA TGCTAGATTA CATGCGCAAA TCTTATGACA CTCAAATTTG AGTTTTATTG AGATGACATA TACTCTCTCC 
GTCCT 

Retrieve as FASTA