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Entry information : AlyAPx23-2
Entry ID 7524
Creation 2010-08-11 (Christophe Dunand)
Last sequence changes 2010-08-11 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-24 (Marie Brette (Scipio))
Peroxidase information: AlyAPx23-2
Name AlyAPx23-2
Class Ascorbate peroxidase    [Orthogroup: APx2011]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyAPx23-2
start..stop		 S start..stop
CrubAPx03-2 540 0 3..292 2..290
TsAPx03-1C 526 0 4..292 2..288
AhalAPx06 520 0 36..292 1..257
BstrAPx03-2 497 3e-180 4..292 2..286
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7524' 'complement(join(21413915..21414115,21414249..21414354,21414441..21414520,21414605..21414687,21414909..21414957,21415048..21415113,21415784..21415833,21416202..21416326,21416465..21416583))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 21416465..21416583 117 N° 2 21416202..21416326 123 N° 3 21415784..21415833 48 N° 4 21415048..21415113 64
N° 5 21414909..21414957 47 N° 6 21414605..21414687 81 N° 7 21414441..21414520 78 N° 8 21414249..21414354 104
N° 9 21413915..21414115 199  
complement(join(21413915..21414115,21414249..21414354,21414441..21414520,2141460 5..21414687,21414909..21414957,21415048..21415113,21415784..21415833,21416202..2 1416326,21416465..21416583))


exon

Literature and cross-references AlyAPx23-2
DNA ref. Phytozome 12:   scaffold_3 (21416583..21413915)
Protein sequence: AlyAPx23-2
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   292
PWM (Da):   %s   31969.19 Transmb domain:   %s   o263-285i
PI (pH):   %s   5.65
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASATLVVDADYLKEIDKARRELRALIAKKNCAPIMLRLAWHDAGTYDAESKTGGPNGSIRNEAEYSHGANSGLKIALDLEEVKTKHPKISYADLYLAGVVAVEVTGGPDISFVPGRKDS
NACTDEGRLPDANQGFKHLKDVFYRMGLSDKDIVALSGAHTGRAHPERSGFDGPWTQDPLKFDNSYFVELLKEEESEGLLKLATDKTLLEVPEFRQYVELYADEDAFFRDYAESHKKLSE
LGFTTPTSSVTKAITDNSTALAHSAVGVAVAAAVVAFGYFYEIRKRMK*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 3, 9 introns)
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGTCGGCGACACTGGTGGTTGACGCGGATTACCTTAAAGAGATCGATAAAGCTCGCCGTGAACTCCGTGCACTCATCGCTAAGAAGAATTGCGCTCCGATCATGCTCCGATTAGCG
TAAGTTTCTATTTCTCTACTTTTTTTTCCGATTCCGTCATCGCGATGTTGTGGAAAATTGTTCGCTGCATTTACGATCGCTCGGTACTTTGATTTTGTTGACATGTTGTTGTTGTTGTCG
TCTTTGGTTTTGTGAAGGTGTGGCATGACGCTGGAACTTATGATGCTGAATCGAAGACAGGTGGACCTAATGGCTCGATTAGGAACGAAGCAGAGTACAGTCATGGTGCTAATAGTGGTT
TGAAGATCGCTCTTGATCTCTGTGGTGCGTTTTTTCGTTTTCCTTCTCTGCTGTTATAGAGATTGTGTTTAGTAGCTTGATGAGACAATTCACATTTGGAACGTATTATTATATGGCTTT
TGAAATCTTGCTAAGTCTACATAATCGTTTTGTACATTGACCTTAAGATGAATAGATGATTATGTGTTGGGTCTTTACATGAATTGGGATCGTTCTTTTAGTAGTCCAGAGGATTTATGA
GAAGTTCACATGTTAAACTTTTTAGTCTATACACATGATCTTTTTTACTTTGTATTCATGTGGTGTATGAGTGTATCTTATGATTTACTAACAATTTTCATAACTATCTTACTTTTTCTT
TTGAACTTGATGGTGGTTCTTTGATATTTCAGAGAGGAAGTGAAAACTAAACATCCCAAAATCAGTTATGCAGACCTATACCAGGTAAGAATTTTGTAAACTCATCAGAAGGGCTAGTTT
GTTTGATAAATTCGGTGGAATTGTGCGTTTGTGGTCTTCAGGGTATAGAAACAGGGGAATTGAAAATTCTGCTTCAGAGTTGAAATATTTGGCTTATTTGCAGTAGGAAAATTCTTATCA
CAAATTAGAAATAATGGTCTAGTTTGTATTCTCTGGCTTTCGCAATGGTACTTCAAGTAAAATCTATTGATACAGTGTAAGAGTTATGGAAGAGTTTAACAAAACGTCTAATCCATTTCT
GTGCTAGGAGATGCACTCACGAAAGACCATAAAAAAAGCGCCACTTGATCATTGACTGTAATTTTTTGAAATTTTCCTGAATTTGGCTATGTCAGTAAGGCTACATTAACATTTCAGTTG
GTTTCCTTAAACTATTTACTCATCAATGGTGTTCTATTTAGCCCTGGAATTACTAGGTTTTAGATGTTTGTGCTTTTTACACCTATATCACATTTTCTAGTACTGTACATATCATGAATT
GTACCACCGTTTTCTTCCTTAGGTATCATAATGTCAAGGCTTTAGCTGTGAATGCAAAAACAAATGTCCACAAGCAGGGCTGCTATTATATTATTGCAAGCAATTTGCAGATCATAGTCA
TATAATCACATGAAATTGATTCTGTCATTTTCAGCTCTTGCTGGTGTGGTAGCGGTTGAAGTTACTGGTGGACCTGACATCAGTTTTGTTCCTGGCCGAAAAGTAATGTTCTCTTAGCCA
TTAAGATGATTTGTATTGCAGCTTACTTCCAAAAGCAATTGACTATATTAGCTGTATGTTTCTCTCTTGTAGGAGATTCAAATGCCTGCACCGATGAAGGAAGACTTCCTGATGCTAATC
AAGGTTGGATGAATTTTCTTTTCCATTTATCACAGAATCCAGAGTGTTTTACTGAAAATTAAACGTATGAACTTTGTATTTAAGTAGCAAACAAATAACGGAAGATGGTCGCATGGAATA
TTTGGAGGGTCATGGTGTTTCCACGATGTACAACAAAATCTTCATTTTGGAATGTTATCTTCCTCAATGAGGGTTTAAACTTATGTCAGCTATTTTGCATGTAGGTGTTTCAAACATCTC
AAAGATGTCTTCTACCGGATGGGACTGTCTGATAAAGATATTGTGGCACTCTCAGGAGCTCATACTCTGGTAAATTCTTTGATTGCTCAATTCACATTTGTTGTTTGTATTCAAAAGTTA
TGTATGGGGTTTGAATTAGATTACAATATTTAGGGGGAAGGGCTCATCCAGAGAGATCAGGTTTTGATGGACCATGGACTCAAGATCCTTTAAAGTTTGATAACTCATACTTTGTGTAAG
ATCCCCTAAATCCGTGGATATAGTTTTCTTTTATTGGAGACAACTACTTTTATTGATAAATCGTGATCACTGTTGGTACAGGGGGAACTGCTGAAAGAAGAAGAATCAGAGGGCTTACTG
AAACTTGCAACGGACAAGACTTTGTTGGAAGTCCCCGAATTCCGTCAATACGTTGAGCTTTACGCAAAGGTAATATTATGGGAGTCTATCCTTACTCTGATCCAAAGATCCGATTTAGTT
TTTCACTCGCAAGCTGCAAATCGAATACAAGCCAAGATAATGTTGCAAGTAGCATCTTGATTTCTTCTTTTGTCCCTTACAGGAGACGAAGATGCATTCTTCAGAGACTATGCAGAGTCA
CACAAGAAACTCTCAGAGCTCGGGTTCACCACACCAACGTCTTCAGTCACTAAGGCAATAACAGACAACAGCACGGCGCTGGCACATAGTGCAGTCGGGGTTGCAGTCGCTGCTGCTGTG
GTGGCCTTTGGCTACTTCTATGAAATTCGAAAAAGGATGAAGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGTCGGCGACACTGGTGGTTGACGCGGATTACCTTAAAGAGATCGATAAAGCTCGCCGTGAACTCCGTGCACTCATCGCTAAGAAGAATTGCGCTCCGATCATGCTCCGATTAGCG
TGGCATGACGCTGGAACTTATGATGCTGAATCGAAGACAGGTGGACCTAATGGCTCGATTAGGAACGAAGCAGAGTACAGTCATGGTGCTAATAGTGGTTTGAAGATCGCTCTTGATCTC
TGTGAGGAAGTGAAAACTAAACATCCCAAAATCAGTTATGCAGACCTATACCAGCTTGCTGGTGTGGTAGCGGTTGAAGTTACTGGTGGACCTGACATCAGTTTTGTTCCTGGCCGAAAA
GATTCAAATGCCTGCACCGATGAAGGAAGACTTCCTGATGCTAATCAAGGTTTCAAACATCTCAAAGATGTCTTCTACCGGATGGGACTGTCTGATAAAGATATTGTGGCACTCTCAGGA
GCTCATACTCTGGGAAGGGCTCATCCAGAGAGATCAGGTTTTGATGGACCATGGACTCAAGATCCTTTAAAGTTTGATAACTCATACTTTGTGGAACTGCTGAAAGAAGAAGAATCAGAG
GGCTTACTGAAACTTGCAACGGACAAGACTTTGTTGGAAGTCCCCGAATTCCGTCAATACGTTGAGCTTTACGCAAAGGACGAAGATGCATTCTTCAGAGACTATGCAGAGTCACACAAG
AAACTCTCAGAGCTCGGGTTCACCACACCAACGTCTTCAGTCACTAAGGCAATAACAGACAACAGCACGGCGCTGGCACATAGTGCAGTCGGGGTTGCAGTCGCTGCTGCTGTGGTGGCC
TTTGGCTACTTCTATGAAATTCGAAAAAGGATGAAGTAA

Retrieve as FASTA