View Redoxidase 7568

Entry information : AlyGPx03

Entry ID	7568
Creation	2010-08-11 (Christophe Dunand)
Last sequence changes	2010-08-11 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2010-12-24 (Marie Brette (Scipio))

Peroxidase information: AlyGPx03

Name

AlyGPx03

Class

Plant glutathione peroxidase [Orthogroup: Gpx2001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis lyrata [TaxId: 59689 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AlyGPx03 start..stop	S start..stop
AtGPx03	410	6.81e-149	1..206	1..206
RsGPx03	308	1e-108	14..206	4..197
BnGPx03_other	305	4.17e-107	14..206	4..197
ThasGPx03	301	6.05e-106	1..206	3..198

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7568' 'complement(join(21192745..21192777,21192864..21193031,21193119..21193237,21193325..21193386,21193613..21193689,21194066..21194227))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	21194066..21194227	160	N° 2	21193613..21193689	75	N° 3	21193325..21193386	60	N° 4	21193119..21193237	117
N° 5	21192864..21193031	166	N° 6	21192745..21192777	31
complement(join(21192745..21192777,21192864..21193031,21193119..21193237,2119332 5..21193386,21193613..21193689,21194066..21194227))

Literature and cross-references AlyGPx03

DNA ref.	Phytozome 12: scaffold_4 (21194227..21192745)

Protein sequence: AlyGPx03

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	206 (302)
PWM (Da):	23160.1 (33127.8)	Transmb domain:	i19-36o
PI (pH):	9.71 (8.21)	Peptide Signal:	cut: 19 range:19-320

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MPRSSRWVNHRATSKTKKLILFLLVAFVFYLYRYPSSPSTVEQSS
SSIYNVSVKDIEGKDVSLSKFTGKVLLIVNVASKCGLTHGNYKEMNILYAKYKTGFEILAFPCNQFGSQEPGSNKEIKETVCNIFKAEFPIFDIEVNGKNTCPLYNFLKEQKGGLFGDAIKWNFAKFLV
DRQGNVVDRYAPTTSPLEIEKDIVKLLASA*

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 3, 5 introns).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGCCTAGATCAAGCAGATGGGTCAATCATCGAGCTACCTCTAAGACTAAAAAATTGATTCTCTTCTTGCTTGTAGCCTTCGTCTTCTACCTCTACAGATACCCTTCTTCTCCATCCACA
GTGGAACAATCATCCAGTTCCATCTACAACGTTTCCGTTAAGGTATAATCAGCTTAAACTTGGATATTTAGAAGCCAATTGTTCACCCTCTATGTTGGTCTGCGTCGATGTTTGGTTCTG
ATTCTGAAGAATCATTCTAATCGCTGATGTTTATTTATGAAAACTTCATGTTTTACTGCGAATTTAGCTTAAGATACTAAATCTATACGAGTGCTTCATTTGAAGGACTTTGTCTAGCTA
AGATACTGAATCAAGAGGAGTGCATATATTTAGTGTTAGATTAGGAAATGACTTTGTTTTGTGTGTTTTTTTAAGTGAATCTTTCAATGACTATATGCCTCTTAAGTTCATCTTTGTAGT
AACATTATTTATCATAACACCATAACTCCGTATCAAATTTTTCGAATTGAAAATGCAGGAGACATCGAAGGGAAAGATGTGAGTTTGAGCAAGTTCACCGGAAAAGTGCTTCTCATCGTC
AATGTAGCCTCTAAGTGGTATGCTACTAAGTACTTATTGTTCTTACTCCTGTCTTCACACCAACTCCTAAATCTTCACAAACAGTATTGTTCTACTCGAACCGTTTCATGTGGACGGATT
CTTTTGCATCAACTATACTTTATTTAGGAATAGCGCAACTCCTCAATGGCTTACAGAAGTGTTGCATATAATGTCACATTACATTGGCGTTATATATAAAATCTTGTTGTGATGAATGGG
CAGTGTGGTCTAACACATGGAAACTACAAAGAAATGAACATTTTGTATGCCAAGTACAAAACTCAGGGTGCGTCTCTTTATCTCGCTTAGCCTTTCTCAGGTTAATAACTAATTGAACAT
TTATAAGTATTAAGGGAAGCATCGTTTTACGCAGGGGGTTTGAGATCTTAGCATTTCCTTGCAACCAATTTGGTAGTCAAGAGCCAGGTAGCAACAAGGAGATCAAGGAAACTGTTTGCA
ATATCTTCAAAGCAGAATTCCCAATCTTTGACAAGGTCTCGCAAACTTTTAAACTAGTCTCAATTTTCATCACACAGTGCCAATTTTGCCTAGTTGTTTACATATCTTTTTTCCAATGCA
AGATATTGAAGTAAATGGAAAGAACACTTGTCCCCTTTACAACTTCTTAAAAGAACAAAAAGGAGGATTGTTTGGGGATGCTATTAAGTGGAATTTCGCTAAATTTCTGGTAGACAGACA
AGGAAATGTCGTGGACCGATATGCTCCAACTACATCACCTCTTGAAATTGAGGTTAGTAGAAGTTTCCCCTCATACATGATATTCATTTCTCTAATCATTGAGCTTACTCTGTAGTTTTC
TCGCTCTTCTTTTCGCAGAAAAGGACATCGTGAAGCTATTGGCATCTGCTTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA