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Entry information : AlyRboh03 (AlyRbohC)
Entry ID 7580
Creation 2010-08-11 (Christophe Dunand)
Last sequence changes 2010-08-11 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-24 (Marie Brette (Scipio))
Peroxidase information: AlyRboh03 (AlyRbohC)
Name (synonym) AlyRboh03 (AlyRbohC)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh001]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyRboh03
start..stop		 S start..stop
AtRboh03 1855 0 1..906 1..905
TsRboh03 1747 0 1..906 1..913
NoffRboh03-1B 1745 0 1..906 1..906
NoffRboh03-1A 1721 0 1..906 1..908
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7580' 'complement(join(14315048..14315157,14315254..14315777,14317096..14317169,14317256..14317358,14317439..14317650,14317740..14318129,14318211..14318642,14318713..14318826,14318909..14318957,14319038..14319194,14319280..14319835))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 14319280..14319835 554 N° 2 14319038..14319194 155 N° 3 14318909..14318957 47 N° 4 14318713..14318826 112
N° 5 14318211..14318642 430 N° 6 14317740..14318129 388 N° 7 14317439..14317650 210 N° 8 14317256..14317358 101
N° 9 14317096..14317169 72 N° 10 14315254..14315777 522 N° 11 14315048..14315157 108  
complement(join(14315048..14315157,14315254..14315777,14317096..14317169,1431725 6..14317358,14317439..14317650,14317740..14318129,14318211..14318642,14318713..1 4318826,14318909..14318957,14319038..14319194,14319280..14319835))


exon

Literature and cross-references AlyRboh03 (AlyRbohC)
DNA ref. Phytozome 12:   scaffold_8 (14319835..14315048)
Protein sequence: AlyRboh03 (AlyRbohC)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   906
PWM (Da):   %s   102375.01 Transmb domain:   %s   o353-372i493-515o535-557i718-735o
PI (pH):   %s   9.93
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MNRVSFEVSGGYHSDAEAGNSGPMSGGQLPPIYKKPANSRFTAENSQRTRTAAPYVDLTVDVQDDRVSVHSLKMEGGSSVEESPELTLLKRNRLEKKTTVVKRLASVSHELKRLTSVSGS
VGGRKPPRPAKLDRTKSAATQALKGLKFISKTDGGAGWSAVEKRFNQITATTGGLLLRTKFGECIGMTSKDFALELFDALARRRNITGEVIDGDQLKEFWEQINDQSFDSRLKTFFDMVD
KDADGRLTEDEVRIISLSASANNLSTIQKRADEYAALIMEELDPDNIGYIMLESLETLLLQAATQSVITSTGERKNLSHMMSQRLKPTFNRNPLKRWYRGLRFFVLDNWKRCWVIVLWLI
VMAILFTYKYIQYKRSLVYAVMGDCVCMAKGAAETVKLNMALILLPVCRNTITWLRNKTRLGVVVPFDDNLNFHKVIAVGIIVGVTMHAGAHLACDFPRLLHATPEAYRPLRQFFGDEQP
KSYWHFVNSVEGITGLVMVLLMAIAFTLATPWFRRGKLNYLPGPLKKLASFNAFWYTHHLFVIVYILLVAHGYYLYLTKDWHNKTTWMYLVAPVILYACERLIRAFRSSIKAVTIRKVAV
YPGNVLAIHLSRPQNFKYKSGQYMFVNCAAVSPFEWHPFSITSAPQDDYLSVHIRVLGDWTRALKGVFSVCKPPPAGVSGLLRADMLHGANNPDFPKVLIDGPYGAPAQDYKKYEVVLLV
GLGIGATPMISIVKDIVNNIKAKEQAQLNRMENGTSEPQRNKKESFRTRRAYFYWVTREQGSFDWFKNIMNEVAERDTNRIIEMHNYCTSVYEEGDARSALIHMLQSLNHAKNGVDIVSG
TRVMSHFAKPNWRNVYKRIAMDHPNSKGVFYCGAPALTKELRHLALDFTHKTSTRFSFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 8, 10 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAATAGAGTGAGTTTTGAAGTGTCAGGAGGCTATCACTCTGATGCAGAAGCCGGAAACAGCGGTCCAATGAGCGGTGGTCAATTACCACCGATCTATAAAAAGCCGGCGAACTCCAGA
TTCACGGCGGAGAACAGTCAAAGAACACGTACAGCGGCGCCATACGTGGACCTCACGGTAGATGTACAAGACGACAGAGTCTCTGTACACAGCTTGAAAATGGAAGGTGGATCTAGCGTT
GAAGAGAGTCCGGAGCTTACGTTGCTGAAACGGAACCGTCTTGAGAAGAAAACAACGGTGGTGAAACGTTTGGCCTCTGTTTCTCATGAGCTTAAACGCTTGACATCGGTTTCTGGTAGT
GTTGGTGGGAGAAAGCCACCTCGACCGGCTAAGTTAGACCGGACTAAATCCGCCGCAACTCAAGCGTTGAAGGGACTTAAGTTCATTAGTAAAACTGACGGTGGCGCGGGCTGGAGTGCC
GTGGAGAAGAGGTTTAATCAGATCACCGCGACTACCGGTGGACTACTTCTTCGGACAAAGTTCGGTGAATGCATAGGTAAAGACTAATGTTATAATTTTGAATGTTTTTTTTTTGTAACA
GAATTTGATTTGAAAGTTTGAATGAAAATTTGGTAATGTAGGGGGATGACTTCAAAGGATTTTGCTTTGGAACTGTTTGATGCATTGGCTAGAAGAAGGAATATAACAGGGGAAGTGATT
GATGGAGATCAACTAAAGGAGTTTTGGGAACAAATCAATGATCAAAGTTTCGATTCCCGGCTTAAAACATTCTTTGACATGTACGGTTTTCGGTTTCCGATTTTTGTTTCTTTTACTTTC
TCTTCTCTAGAATGTGAATTTGAAATTTATGATAATGCAGGGGGTGGATAAAGATGCTGATGGTAGACTAACAGAAGACGAAGTTAGAGAGGTAAATATACAGAGTTTTATAAGTTATAT
CTGCTCTGTTTCAGTGTTAACTCTGTTTCTGATCTTGTTGTTGTGTTTCACAGATATTATCAGTCTTAGTGCTTCTGCGAATAATCTATCTACAATCCAGAAGAGAGCTGATGAATATGC
AGCACTGATCATGGAAGAGCTGGATCCAGACAATATTGGATACATCATGGTAAGTAATTAGCTTGATTTTACCATATTGTGGCTGGAGTCTGAAGCATTTATCGTGAATCTTGAAACAGT
TTTGGAGAGTCTTGAGACTCTGCTTTTGCAAGCGGCAACACAGTCTGTGATAACAAGTACTGGGGAGAGAAAGAATCTGAGCCATATGATGAGTCAGAGGCTTAAGCCGACGTTTAACCG
CAATCCATTAAAGCGATGGTACCGTGGCCTTAGATTCTTCGTGTTAGACAACTGGAAAAGATGCTGGGTTATAGTACTATGGCTCATAGTTATGGCTATCCTCTTCACCTACAAATACAT
CCAGTACAAGCGTAGCCTGGTGTATGCAGTGATGGGTGATTGTGTATGCATGGCCAAAGGTGCAGCAGAAACAGTTAAGCTGAACATGGCTTTAATTCTCTTACCTGTTTGTAGAAACAC
CATCACATGGCTTAGGAATAAGACCAGGTTGGGTGTTGTTGTCCCATTTGATGATAATCTCAACTTCCACAAGGTAAACAACAAAAACGAACATATCTTAAAACATGTTCTGTTTCAGGA
TTTTCTTATGATGAAACAATGCTTAAAACATTAGGTGTTATAGCGGTGGGGATTATAGTTGGAGTAACGATGCACGCCGGGGCACATTTGGCGTGTGACTTCCCGCGGTTACTACACGCA
ACTCCAGAGGCATATAGGCCTTTAAGGCAGTTTTTCGGGGATGAGCAACCGAAGAGCTACTGGCATTTTGTAAACTCGGTGGAAGGTATCACCGGACTCGTAATGGTTTTGTTAATGGCA
ATTGCATTCACACTAGCCACGCCATGGTTCAGAAGAGGGAAGCTAAACTATCTTCCAGGACCATTAAAGAAACTAGCTAGCTTCAATGCCTTCTGGTACACTCATCATTTGTTTGTCATA
GTCTACATTCTTCTTGTTGCTCATGGGTACTACTTGTATCTCACCAAAGACTGGCACAACAAGACGGTACATTAACTTTAATTTAGCTCCTTTGAATCATCACAAGTTACATAAGTTGTT
ACTAATATATCATTTGGTCATGAAAATTGTTGCAGACACATGGATGTATTTGGTGGCACCAGTGATTCTATACGCGTGCGAAAGGTTGATAAGAGCATTCAGATCGAGCATCAAGGCGGT
GACTATTAGAAAAGTAGCAGTTTATCCAGGAAACGTGTTGGCAATTCACTTGTCAAGACCTCAAAACTTCAAATACAAGAGCGGTCAATACATGTTTGTTAACTGTGCTGCTGTTTCTCC
ATTTGAATGGTATGAACCAAACCGATAACTTCATATAGTGCATCGATCCTTACATATACCTAATGAGTGTTCACCATGATGTAATGCAGGCGCATCCTTTTTCAATCACATCTGCACCAC
AAGATGATTACCTAAGTGTTCACATTAGAGTTCTTGGGGATTGGACAAGGGCTCTCAAAGGAGTCTTCTCTGAGGTTATTACTATAAAGTCTTTAACGAACCAATCTTTTTTGAATTTAA
AGAGTTAGATATGAATGGTTTGCTTTGTCTGATGTTTCAGGTGTGTGTAAGCCACCTCCGGCAGGAGTTAGTGGTCTGCTCAGAGCCGACATGTTGCATGGTGCAAATAATCCTGAGTAA
GTTAAAATCCTAACCACTATATCTTGAAAAATGTGATCCATGCGTCGTTATCTTAATTCTACACGTAAATGACTAAATCATGCTATAGAGAGGATAGGTTCTCGAAGTTTTTTTAGAGGA
TGAATCGTGAATCGTGATATCCACTTAATTAGGAAAAGCATTGTTGAGTATTTTGGTATATAAAGGGTAACAAATTCAAATAATGTACCTAATAGATTATAATAAAGTGGTGTGGGAGAC
CACAACTAAAACAAACTATGTACCTAACCAAATATCACTATTTTATTTAGGTGATTGAGACGCATTATTTGGTTATATATCATGCAAGCACGATGTTTTTGCTTCTCCATGTGACCGCGT
AAATCTTTGGGTTGCAATATCTTATTTCTCAACTTTTTCCTTAAAAAACATTGCAAGGTGGTCGGATAATTAATTGTGCTAGGTCAATATTCTACGTTTTTTAATAAATATTTTGCATCA
CGTCAATTATATTGCCAATATATATGGTTTATTTACTTTATCAAGTTCCCATTTTTTCTAAATAAAAAAAAAAACAATAAAACAGATGCTGACTTTTCAAATGGTCTTCGTAGTTTCCTA
TCTTGGGTTTGAGCCTATCTAACTTTGAGGGCACATCACATGTAGTATAGATCCAGGTGTACGAATATACTTGCATATATACTTCATTAGTTTTGGATAAGTGTGATTATATTATTCTAC
TCATTTCAGAATTCTAACGTGAAATTATTTTTTATAGATTTTTCTTTTGGTGCTAGTAAAAATGATAACTACCTAATCATTATATCATAGTATAGAGTAAGACAAAAAAAACAATGTCAC
AAGGGAAAGTGAACATGACATTCACTAAAAAGAGCTTATATACATAATTAATCAGTAGTCATACTTTTTTTTTTTTAGTCATACTTTTTTTAATCTAACTATATTCAAAGATATTAGATA
GGAGATGTGTTTTTAATCAAGTGGTTAAGTCCACTTGACTCCGCCTTTTCCATCGGAGTTCGACTCCACTAAGTCGCGTTATTCCGCGTAGTAGGGATTGGCTATGGATCGGGCTTTGTC
GATCCAAAGATGTCAAAAAAAAAAAAAAAAATTAGATATACCGAATTTTGAAAGATCTTAATGTGAATATAATATATAGATATATTTTGATTTTTGACAAAATATTAGTTACGACCAAAT
TGTTTGATTTCTTTATAGGTTTTACCTAGACAATTTCATCTAAGTTAATTTCTTGTTGAGCAATATATAAAAATATAATGACATTTGCTAATGTCAATGTCCCTTATTTCACAGCTCTTC
CCGAAAGTCTTGATCGATGGTCCATACGGTGCACCAGCCCAAGACTACAAGAAATACGAGGTGGTTCTACTAGTTGGTCTCGGGATTGGAGCCACACCAATGATCAGTATCGTCAAAGAC
ATTGTTAACAACATCAAGGCCAAGGAACAAGCCCAACTCAACCGAATGGAGAATGGAACAAGCGAACCACAACGAAATAAGAAAGAGAGTTTCAGGACACGTAGGGCTTACTTCTATTGG
GTTACCCGTGAGCAAGGCTCTTTCGATTGGTTCAAGAACATCATGAACGAAGTCGCGGAACGAGATACCAACCGCATCATCGAGATGCATAATTATTGTACAAGTGTCTATGAAGAAGGA
GACGCTCGTTCCGCACTTATACATATGCTTCAGTCACTAAACCATGCAAAGAACGGCGTTGACATTGTCTCTGGAACAAGGGTTATGTCCCATTTCGCTAAACCTAATTGGAGAAATGTT
TACAAACGTATAGCTATGGATCACCCTAACTCCAAAGTTGGTAAGTTCACATCTTTCTTCTCTACTATGCTCGATCGCGGTTATATAGAAATGAAAAGTGATATAGGACTAAAGAATCTT
GATTTGGTATGTGCAGGAGAGTGTTCTACTGTGGAGCACCAGCATTGACAAAGGAGCTAAGGCATTTAGCTTTAGATTTCACCCACAAGACAAGCACCAGATTCTCCTTCCACAAAGAGA
ATTTCTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAATAGAGTGAGTTTTGAAGTGTCAGGAGGCTATCACTCTGATGCAGAAGCCGGAAACAGCGGTCCAATGAGCGGTGGTCAATTACCACCGATCTATAAAAAGCCGGCGAACTCCAGA
TTCACGGCGGAGAACAGTCAAAGAACACGTACAGCGGCGCCATACGTGGACCTCACGGTAGATGTACAAGACGACAGAGTCTCTGTACACAGCTTGAAAATGGAAGGTGGATCTAGCGTT
GAAGAGAGTCCGGAGCTTACGTTGCTGAAACGGAACCGTCTTGAGAAGAAAACAACGGTGGTGAAACGTTTGGCCTCTGTTTCTCATGAGCTTAAACGCTTGACATCGGTTTCTGGTAGT
GTTGGTGGGAGAAAGCCACCTCGACCGGCTAAGTTAGACCGGACTAAATCCGCCGCAACTCAAGCGTTGAAGGGACTTAAGTTCATTAGTAAAACTGACGGTGGCGCGGGCTGGAGTGCC
GTGGAGAAGAGGTTTAATCAGATCACCGCGACTACCGGTGGACTACTTCTTCGGACAAAGTTCGGTGAATGCATAGGGATGACTTCAAAGGATTTTGCTTTGGAACTGTTTGATGCATTG
GCTAGAAGAAGGAATATAACAGGGGAAGTGATTGATGGAGATCAACTAAAGGAGTTTTGGGAACAAATCAATGATCAAAGTTTCGATTCCCGGCTTAAAACATTCTTTGACATGGTGGAT
AAAGATGCTGATGGTAGACTAACAGAAGACGAAGTTAGAGAGATTATCAGTCTTAGTGCTTCTGCGAATAATCTATCTACAATCCAGAAGAGAGCTGATGAATATGCAGCACTGATCATG
GAAGAGCTGGATCCAGACAATATTGGATACATCATGTTGGAGAGTCTTGAGACTCTGCTTTTGCAAGCGGCAACACAGTCTGTGATAACAAGTACTGGGGAGAGAAAGAATCTGAGCCAT
ATGATGAGTCAGAGGCTTAAGCCGACGTTTAACCGCAATCCATTAAAGCGATGGTACCGTGGCCTTAGATTCTTCGTGTTAGACAACTGGAAAAGATGCTGGGTTATAGTACTATGGCTC
ATAGTTATGGCTATCCTCTTCACCTACAAATACATCCAGTACAAGCGTAGCCTGGTGTATGCAGTGATGGGTGATTGTGTATGCATGGCCAAAGGTGCAGCAGAAACAGTTAAGCTGAAC
ATGGCTTTAATTCTCTTACCTGTTTGTAGAAACACCATCACATGGCTTAGGAATAAGACCAGGTTGGGTGTTGTTGTCCCATTTGATGATAATCTCAACTTCCACAAGGTTATAGCGGTG
GGGATTATAGTTGGAGTAACGATGCACGCCGGGGCACATTTGGCGTGTGACTTCCCGCGGTTACTACACGCAACTCCAGAGGCATATAGGCCTTTAAGGCAGTTTTTCGGGGATGAGCAA
CCGAAGAGCTACTGGCATTTTGTAAACTCGGTGGAAGGTATCACCGGACTCGTAATGGTTTTGTTAATGGCAATTGCATTCACACTAGCCACGCCATGGTTCAGAAGAGGGAAGCTAAAC
TATCTTCCAGGACCATTAAAGAAACTAGCTAGCTTCAATGCCTTCTGGTACACTCATCATTTGTTTGTCATAGTCTACATTCTTCTTGTTGCTCATGGGTACTACTTGTATCTCACCAAA
GACTGGCACAACAAGACGACATGGATGTATTTGGTGGCACCAGTGATTCTATACGCGTGCGAAAGGTTGATAAGAGCATTCAGATCGAGCATCAAGGCGGTGACTATTAGAAAAGTAGCA
GTTTATCCAGGAAACGTGTTGGCAATTCACTTGTCAAGACCTCAAAACTTCAAATACAAGAGCGGTCAATACATGTTTGTTAACTGTGCTGCTGTTTCTCCATTTGAATGGCATCCTTTT
TCAATCACATCTGCACCACAAGATGATTACCTAAGTGTTCACATTAGAGTTCTTGGGGATTGGACAAGGGCTCTCAAAGGAGTCTTCTCTGAGGTGTGTAAGCCACCTCCGGCAGGAGTT
AGTGGTCTGCTCAGAGCCGACATGTTGCATGGTGCAAATAATCCTGACTTCCCGAAAGTCTTGATCGATGGTCCATACGGTGCACCAGCCCAAGACTACAAGAAATACGAGGTGGTTCTA
CTAGTTGGTCTCGGGATTGGAGCCACACCAATGATCAGTATCGTCAAAGACATTGTTAACAACATCAAGGCCAAGGAACAAGCCCAACTCAACCGAATGGAGAATGGAACAAGCGAACCA
CAACGAAATAAGAAAGAGAGTTTCAGGACACGTAGGGCTTACTTCTATTGGGTTACCCGTGAGCAAGGCTCTTTCGATTGGTTCAAGAACATCATGAACGAAGTCGCGGAACGAGATACC
AACCGCATCATCGAGATGCATAATTATTGTACAAGTGTCTATGAAGAAGGAGACGCTCGTTCCGCACTTATACATATGCTTCAGTCACTAAACCATGCAAAGAACGGCGTTGACATTGTC
TCTGGAACAAGGGTTATGTCCCATTTCGCTAAACCTAATTGGAGAAATGTTTACAAACGTATAGCTATGGATCACCCTAACTCCAAAGTTGGAGTGTTCTACTGTGGAGCACCAGCATTG
ACAAAGGAGCTAAGGCATTTAGCTTTAGATTTCACCCACAAGACAAGCACCAGATTCTCCTTCCACAAAGAGAATTTCTAA

Retrieve as FASTA