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Entry information : AlyRboh04 (AlyRbohD)
Entry ID 7583
Creation 2010-08-11 (Christophe Dunand)
Last sequence changes 2010-08-11 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-24 (Marie Brette (Scipio))
Peroxidase information: AlyRboh04 (AlyRbohD)
Name (synonym) AlyRboh04 (AlyRbohD)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh001]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyRboh04
start..stop		 S start..stop
AtRboh04 1864 0 1..920 1..921
NoffRboh04-1B 1819 0 1..920 1..920
NoffRboh04-1A 1798 0 1..920 1..920
TsRboh04 1742 0 3..920 1..928
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 9954828..9955455 626 N° 2 9955541..9955703 161 N° 3 9955896..9955944 47 N° 4 9956269..9956382 112
N° 5 9956837..9957649 811 N° 6 9957744..9957839 94 N° 7 9957994..9958783 788 N° 8 9958896..9959005 108
join(9954828..9955455,9955541..9955703,9955896..9955944,9956269..9956382,9956837 ..9957649,9957744..9957839,9957994..9958783,9958896..9959005)


exon

Literature and cross-references AlyRboh04 (AlyRbohD)
DNA ref. Phytozome 12:   scaffold_8 (9954828..9959005)
Protein sequence: AlyRboh04 (AlyRbohD)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   920
PWM (Da):   %s   103742.54 Transmb domain:   %s   o377-396i517-539o559-581i739-756o
PI (pH):   %s   9.66
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MKMRRGNSSTDHELGILRGANSDTNSDTESIASDRGAFSGPLGRPKRASKKNARFADDLPKRSNSVAGGRGDDDEYVEITLDIRDDSVAVHSVQQAAGGGAHLEDPELALLTKKTLESSL
NNTTSLSFFRSTSSRIKNASRELRRVFSRRPSPAVRRFDRTSSAAIHALKGLKFIATKTAAWPAVDQRFDKLSADSNGFLLSSKFWECLGMNKESKDFADQLFRALARRNNISGDAITKE
QLRIFWEQISDESFDAKLQVFFDMVDKDEDGRVTEEEVAIISLSASANKLSNIQKQAKEYAALIMEELDPDNAGFIMIENLEMLLLQAPNQSVRMGDSRILSQMLSQKLKPAKESNPLVR
WSEKIKYFILDNWQRLWIMMLWLGICGGLFTYKFIQYKKNKAAYDVMGYCVCVAKGGAETLKFNMALILLPVCRNTITWLRNKTKLGTVVPFDDNLNFHKVIASGIVVGVLLHAGAHLTC
DFPRLIAADEETYEPMEKYFGEQPENYWWFVKGVEGWTGIVMVVLMAIAFTLATPWFRRNKLNLPKFLKKLTGFNAFWYSHHLFIIVYALLIVHGIKLYLTKIWYHKTTWMYLAVPILLY
ASERLLRAFRSSIKPVKMLKVAVYPGNVLSLHMTKPQGFKYKSGQYMFVNCRAVSPFEWHPFSITSAPGDDYLSVHIRTLGDWTRKLRTVFSEVCKPPTAGKSGLLRADGGDGNLPFPKV
LIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISILKDIINNMKSPDSDIENNNSNNNSKGFKTRKAYFYWVTREQGSFEWFKGIMDEVSELDEEGIIELHNYCTSVYEEGDARVALIAML
QSLQHAKNGVDVVSGTRVKSHFAKPNWRQVYKKIAVQHPGKRIGVFYCGAPGLTKELKNLALDFSRKTTTKFDFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 8, 7 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAAATGAGACGAGGCAATTCAAGTACCGACCATGAACTTGGGATTCTACGAGGAGCTAACTCGGATACCAACTCGGATACTGAAAGCATCGCTAGCGACCGCGGCGCCTTCAGTGGT
CCGCTTGGTCGGCCTAAACGTGCGTCCAAGAAAAACGCAAGATTCGCCGACGATCTTCCCAAGAGAAGCAACAGTGTTGCTGGCGGCCGCGGTGACGACGATGAGTACGTGGAGATCACG
CTAGACATTAGGGACGACTCCGTGGCCGTCCACAGTGTCCAACAAGCAGCTGGAGGAGGAGCCCACCTAGAGGACCCGGAGCTAGCCCTTCTCACGAAGAAGACACTCGAGAGCAGCCTC
AACAACACCACCTCCTTATCATTTTTCCGAAGCACCTCCTCACGAATCAAGAACGCCTCCCGCGAGCTCCGCCGTGTGTTCTCTAGACGTCCCTCCCCGGCCGTGCGGCGGTTTGACCGC
ACCAGCTCCGCGGCCATCCACGCTCTCAAAGGTCTAAAGTTCATCGCCACAAAGACTGCCGCGTGGCCTGCCGTCGACCAACGCTTCGATAAACTCTCCGCTGATTCCAACGGCTTCTTA
CTCTCATCCAAGTTTTGGGAATGCTTAGAGGTAAATTATTCACTTCAGGCTAAACAATTCTATTATTAGTATTTCCATTTTTGTTAGTTTCATTTTTGGTTCTTTAAAACTCCAGGAATG
AACAAGGAATCGAAAGACTTCGCAGACCAACTCTTTAGAGCATTAGCTCGCCGGAATAACATCTCCGGCGATGCAATCACAAAGGAACAGCTCAGGATATTTTGGGAGCAGATCTCAGAC
GAAAGCTTTGATGCAAAACTACAAGTCTTTTTTGATATATGTAAGCTTTTTTACTTATCTTCACCTAACCCACAATAAATATCTAACGCGTAATCACTATTTGTCGTTTTAATATTGACT
CTTAATGAAAATTAAACGGTCATCAGAATTTAAGGACCAAAAATAATATTATTAATCATTTGTGGAGGTATGGTGGATTTGTAACTAATAAATGACATCACTGTTTGGTCAGGGTGGACA
AAGATGAAGATGGGCGAGTAACAGAAGAAGAGGTGGCTGAGAGGTGAGAAAAAACACACACCATTCAATAATTATCTTTTTCAAATATTTTATTATATTTATACATATTCTTGGTTGATT
GTTATTTTTTCTTATATTTTATACATATTCTTGGTTGATTATTTTGACAATTTTGTCCACGCGCAAATCCCCACTGACTTTATCTGCTGACGTTTACTCTTAACATCATCAATATATTAA
CTCCATCTGAACACGACAAAAATGGTACTAGATAGTTAGAGTAGTCTTTATTACTTTAGCTTAGGTTATTAATGTTCAAATACTTTCTTTATCTTTTGTTTTCTAATTTGTTGGTTATTT
ATTGCAGATTATTAGTCTCAGTGCTTCAGCGAACAAGCTCTCTAATATTCAAAAGCAAGCCAAAGAATATGCGGCACTGATAATGGAAGAGTTGGACCCAGACAATGCTGGGTTTATTAT
GTGGTACGTGTGGTCCACTTTCACCCACTCAATCACACTAATGCTATATGTATGTCGTAAATTTAACCACCCTTAAAATACTAGGAAAAACGTGGAAAAACACAACGTTCTAGAAGTCTT
AAGTGGTCAAAATTATTGGGTCACCATGATGTTTATTTTTCAACTTGATTGGGCCATCTTGATTTTTTGACCAAACCAATCAACAAAAACTCGACACTGGGTGGTTAGTGGCTACGATAT
GAAAAAATGACAAATAAAATCGTAAAACATATGAACCAAAATATATAATCAAAGATTATACAGTCTTAGGCGGCTTTCGAAATTCAGCTAATTTTTTTATTATTGGATAAACCTATGAAA
ATTGTTTAACAAAAAAAAATCATTTTGGAACATTAATGTTTTATTGTAATGTTTTAGACTTTTAGTTAATGATATGAAATGGACATTGGTGAAACAGATCGAAAACCTGGAGATGTTGCT
ATTACAAGCACCGAACCAGTCGGTGCGGATGGGAGACAGCAGGATACTTAGTCAGATGCTAAGTCAGAAGCTGAAACCGGCAAAAGAGAGCAACCCTTTAGTGAGATGGTCGGAGAAAAT
CAAATATTTCATACTTGACAATTGGCAGAGACTATGGATCATGATGCTATGGCTTGGCATATGCGGCGGCCTCTTTACTTACAAGTTCATTCAGTACAAGAAGAACAAAGCTGCGTATGA
TGTGATGGGTTATTGTGTTTGTGTCGCCAAGGGAGGCGCGGAGACTCTTAAATTCAACATGGCTCTCATATTGCTGCCTGTTTGTCGTAACACCATCACTTGGCTTAGGAACAAGACTAA
GCTAGGTACTGTCGTTCCGTTTGATGATAATCTTAACTTCCATAAGGTTATTGCAAGCGGGATTGTGGTCGGGGTTTTGCTCCATGCGGGAGCGCATTTAACATGTGATTTCCCGCGTTT
AATTGCCGCGGATGAGGAAACCTATGAGCCAATGGAAAAATACTTTGGGGAGCAACCGGAGAATTACTGGTGGTTTGTGAAGGGTGTGGAAGGATGGACTGGCATTGTGATGGTTGTGCT
AATGGCTATAGCCTTTACACTCGCTACGCCTTGGTTCCGTCGTAACAAGCTTAACTTACCTAAATTCCTCAAGAAGCTTACCGGTTTCAACGCCTTTTGGTACTCCCACCATTTGTTCAT
CATTGTTTATGCTCTTCTCATTGTCCACGGTATCAAGCTCTACCTCACAAAGATTTGGTATCATAAAACGCGGTACGCTCTTCAAATCATTTTCTATGTTTTCTTCTTTAATTTCTTTCA
TTTTTCGGGTTAATAACACTTCGTGTTTATATGATGATTCTTGTAGACATGGATGTATCTTGCGGTACCCATCCTTCTATATGCATCTGAGAGGCTGCTCCGTGCTTTCAGATCAAGTAT
CAAACCGGTTAAGATGCTCAAGAGGTCAGATATATTTCTATTTATCTCTTGAAGACCTTAGGTTTAAATAAAGAGTAAAAAAACAAAAAATTTTATAAATCTTTCAACTAATACCTTTCT
TTTTTAATAAAAGTAGGAAAATTACCTTTGAACTTAATCCTTATTTATGTAACAATAGGTGGCTGTTTACCCCGGGAATGTATTGTCTCTACACATGACGAAGCCACAAGGATTCAAATA
CAAAAGTGGACAGTACATGTTCGTGAACTGCCGAGCCGTATCTCCTTTCGAATGGCATCCTTTCTCCATCACATCCGCTCCCGGAGACGATTACCTAAGCGTACACATCCGCACTCTCGG
TGACTGGACACGTAAGCTCAGGACCGTTTTCTCCGAGGTGTGCAAACCTCCTACTGCCGGTAAAAGTGGTCTACTCCGAGCAGACGGAGGAGATGGGAACCTCCCGTTCCCCAAGGTCCT
TATCGACGGTCCATACGGTGCTCCCGCGCAAGACTACAAGAAATACGACGTGGTACTCCTCGTAGGTCTCGGCATTGGAGCCACGCCTATGATCAGCATCCTTAAGGACATCATCAACAA
CATGAAATCTCCTGACAGTGACATCGAGAATAACAACAGTAACAACAACAGTAAAGGGTTCAAGACGAGGAAGGCTTACTTCTACTGGGTGACAAGAGAACAAGGATCGTTCGAGTGGTT
CAAGGGAATAATGGACGAGGTTTCGGAGTTAGACGAGGAAGGAATTATCGAGCTTCACAATTATTGCACGAGTGTGTACGAGGAAGGCGATGCTAGAGTGGCTCTCATTGCCATGCTTCA
GTCGTTGCAACATGCTAAGAACGGTGTCGATGTTGTGTCGGGGACACGTGTCAAGTCCCACTTTGCTAAACCTAACTGGAGACAAGTCTACAAGAAAATCGCAGTTCAACATCCCGGCAA
AAGAATCGCGGTAAACTAATCTCGACCATTAATCTCGTTATGTACGTGATAATGTATAATAATGATAATGTATAATAAAGTAATGAATTTGGATTAAATACTAATATGAGTTTTCATTGC
AGGAGTCTTCTACTGTGGTGCACCAGGATTGACAAAGGAATTAAAAAATCTAGCTTTGGATTTCTCTCGAAAGACAACTACCAAGTTTGACTTCCACAAAGAGAACTTTTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAAATGAGACGAGGCAATTCAAGTACCGACCATGAACTTGGGATTCTACGAGGAGCTAACTCGGATACCAACTCGGATACTGAAAGCATCGCTAGCGACCGCGGCGCCTTCAGTGGT
CCGCTTGGTCGGCCTAAACGTGCGTCCAAGAAAAACGCAAGATTCGCCGACGATCTTCCCAAGAGAAGCAACAGTGTTGCTGGCGGCCGCGGTGACGACGATGAGTACGTGGAGATCACG
CTAGACATTAGGGACGACTCCGTGGCCGTCCACAGTGTCCAACAAGCAGCTGGAGGAGGAGCCCACCTAGAGGACCCGGAGCTAGCCCTTCTCACGAAGAAGACACTCGAGAGCAGCCTC
AACAACACCACCTCCTTATCATTTTTCCGAAGCACCTCCTCACGAATCAAGAACGCCTCCCGCGAGCTCCGCCGTGTGTTCTCTAGACGTCCCTCCCCGGCCGTGCGGCGGTTTGACCGC
ACCAGCTCCGCGGCCATCCACGCTCTCAAAGGTCTAAAGTTCATCGCCACAAAGACTGCCGCGTGGCCTGCCGTCGACCAACGCTTCGATAAACTCTCCGCTGATTCCAACGGCTTCTTA
CTCTCATCCAAGTTTTGGGAATGCTTAGGAATGAACAAGGAATCGAAAGACTTCGCAGACCAACTCTTTAGAGCATTAGCTCGCCGGAATAACATCTCCGGCGATGCAATCACAAAGGAA
CAGCTCAGGATATTTTGGGAGCAGATCTCAGACGAAAGCTTTGATGCAAAACTACAAGTCTTTTTTGATATGGTGGACAAAGATGAAGATGGGCGAGTAACAGAAGAAGAGGTGGCTGAG
ATTATTAGTCTCAGTGCTTCAGCGAACAAGCTCTCTAATATTCAAAAGCAAGCCAAAGAATATGCGGCACTGATAATGGAAGAGTTGGACCCAGACAATGCTGGGTTTATTATGATCGAA
AACCTGGAGATGTTGCTATTACAAGCACCGAACCAGTCGGTGCGGATGGGAGACAGCAGGATACTTAGTCAGATGCTAAGTCAGAAGCTGAAACCGGCAAAAGAGAGCAACCCTTTAGTG
AGATGGTCGGAGAAAATCAAATATTTCATACTTGACAATTGGCAGAGACTATGGATCATGATGCTATGGCTTGGCATATGCGGCGGCCTCTTTACTTACAAGTTCATTCAGTACAAGAAG
AACAAAGCTGCGTATGATGTGATGGGTTATTGTGTTTGTGTCGCCAAGGGAGGCGCGGAGACTCTTAAATTCAACATGGCTCTCATATTGCTGCCTGTTTGTCGTAACACCATCACTTGG
CTTAGGAACAAGACTAAGCTAGGTACTGTCGTTCCGTTTGATGATAATCTTAACTTCCATAAGGTTATTGCAAGCGGGATTGTGGTCGGGGTTTTGCTCCATGCGGGAGCGCATTTAACA
TGTGATTTCCCGCGTTTAATTGCCGCGGATGAGGAAACCTATGAGCCAATGGAAAAATACTTTGGGGAGCAACCGGAGAATTACTGGTGGTTTGTGAAGGGTGTGGAAGGATGGACTGGC
ATTGTGATGGTTGTGCTAATGGCTATAGCCTTTACACTCGCTACGCCTTGGTTCCGTCGTAACAAGCTTAACTTACCTAAATTCCTCAAGAAGCTTACCGGTTTCAACGCCTTTTGGTAC
TCCCACCATTTGTTCATCATTGTTTATGCTCTTCTCATTGTCCACGGTATCAAGCTCTACCTCACAAAGATTTGGTATCATAAAACGACATGGATGTATCTTGCGGTACCCATCCTTCTA
TATGCATCTGAGAGGCTGCTCCGTGCTTTCAGATCAAGTATCAAACCGGTTAAGATGCTCAAGGTGGCTGTTTACCCCGGGAATGTATTGTCTCTACACATGACGAAGCCACAAGGATTC
AAATACAAAAGTGGACAGTACATGTTCGTGAACTGCCGAGCCGTATCTCCTTTCGAATGGCATCCTTTCTCCATCACATCCGCTCCCGGAGACGATTACCTAAGCGTACACATCCGCACT
CTCGGTGACTGGACACGTAAGCTCAGGACCGTTTTCTCCGAGGTGTGCAAACCTCCTACTGCCGGTAAAAGTGGTCTACTCCGAGCAGACGGAGGAGATGGGAACCTCCCGTTCCCCAAG
GTCCTTATCGACGGTCCATACGGTGCTCCCGCGCAAGACTACAAGAAATACGACGTGGTACTCCTCGTAGGTCTCGGCATTGGAGCCACGCCTATGATCAGCATCCTTAAGGACATCATC
AACAACATGAAATCTCCTGACAGTGACATCGAGAATAACAACAGTAACAACAACAGTAAAGGGTTCAAGACGAGGAAGGCTTACTTCTACTGGGTGACAAGAGAACAAGGATCGTTCGAG
TGGTTCAAGGGAATAATGGACGAGGTTTCGGAGTTAGACGAGGAAGGAATTATCGAGCTTCACAATTATTGCACGAGTGTGTACGAGGAAGGCGATGCTAGAGTGGCTCTCATTGCCATG
CTTCAGTCGTTGCAACATGCTAAGAACGGTGTCGATGTTGTGTCGGGGACACGTGTCAAGTCCCACTTTGCTAAACCTAACTGGAGACAAGTCTACAAGAAAATCGCAGTTCAACATCCC
GGCAAAAGAATCGGAGTCTTCTACTGTGGTGCACCAGGATTGACAAAGGAATTAAAAAATCTAGCTTTGGATTTCTCTCGAAAGACAACTACCAAGTTTGACTTCCACAAAGAGAACTTT
TAG

Retrieve as FASTA