View Redoxidase 7925

Entry information : BdiAPx08 (Bradi5g20670)

Entry ID	7925
Creation	2011-01-17 (Toky Ramarohetra)
Last sequence changes	2011-01-17 (Toky Ramarohetra)
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2011-02-08 (Toky Ramarohetra (Scipio))

Peroxidase information: BdiAPx08 (Bradi5g20670)

Name (synonym)

BdiAPx08 (Bradi5g20670)

Class

Ascorbate peroxidase [Orthogroup: APx2004]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Brachypodium

Organism

Brachypodium distachyon [TaxId: 15368 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	BdiAPx08 start..stop	S start..stop
TaAPx08-1B	614	0	5..366	23..377
TaAPx08-1A	596	0	11..366	1..352
TaAPx08-1D	594	0	5..366	23..379
SbAPx09	561	0	11..366	1..351

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7925' 'join(23467732..23467869,23467961..23468083,23468285..23468360,23468448..23468482,23468579..23468644,23468763..23468803,23468924..23469054,23469262..23469368,23469476..23469613,23469739..23469873,23469968..23470078)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	23467732..23467869	136	N° 2	23467961..23468083	121	N° 3	23468285..23468360	74	N° 4	23468448..23468482	33
N° 5	23468579..23468644	64	N° 6	23468763..23468803	39	N° 7	23468924..23469054	129	N° 8	23469262..23469368	105
N° 9	23469476..23469613	136	N° 10	23469739..23469873	133	N° 11	23469968..23470078	109
join(23467732..23467869,23467961..23468083,23468285..23468360,23468448..23468482 ,23468579..23468644,23468763..23468803,23468924..23469054,23469262..23469368,234 69476..23469613,23469739..23469873,23469968..23470078)

Literature and cross-references BdiAPx08 (Bradi5g20670)

DNA ref.	Phytozome 12: Bd5 (23467732..23470078)
EST ref.	GenBank: GT832371.1 [3' end] GT788045.1 [Fragment]

Protein sequence: BdiAPx08 (Bradi5g20670)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	366 (308)
PWM (Da):	39187.09 (35047.6)
PI (pH):	9.02 (7.50)	Peptide Signal:	cut: 23 range:23-330

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MRWSSKGGESMAGATFLSAPALLGPRAGGLPSVSVTSSPARRQHA
YIQVCCHAKAGGSEAAAAAREEPPRFRRRDLIGGCMGTAVGLEIIDGSTGVATAADLIERRQRSEFQSSIKGTLTAAIAKPELVPSLLTLALNDAMTYDKATKSGGPNGSIRLSAEINRPE
NSGLSAALDMLTDAKKEIDSYSKGGPIAFADLIQIAQQALKQTFLDAAIAKTGGNEEKGRTLYSAYGSSGQWGLFDKIFGREDTQEPDPEGRVPKWSSASVQEMKHKFIAVGFGPRLAVM
SAFLGPDQAATEAKLIADPDCRPWVEKYQRSRETVSRTDYEVDLITTLTKLSYLGQKINYEAYTYPKQKINLGKLKL*

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 5, 10 introns), 15 ESTs. Strain="Bd21".

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGCGCTGGTCGTCCAAGGGAGGAGAATCAATGGCGGGCGCGACCTTTCTCTCCGCTCCCGCGCTGCTTGGCCCCCGCGCCGGCGGCCTCCCTTCCGTCTCAGTCACATCATCCCCGGCG
CGCAGACAGCATGCATACACGTATGTGCGCGTCCCGATTTCTGCTCGACTTGTGAGTTCAAATTAGACAACGAGAAAAAGGCACCAAGGTTTCTTGACTAACTCCCTGCAGATTCAGGTA
TGCTGTCACGCCAAAGCCGGGGGCTCCGAGGCTGCTGCCGCCGCACGCGAAGAGCCTCCGCGGTTCCGCAGAAGAGATTTGATCGGGGGCTGCATGGGCACCGCCGTTGGCTTGTGGTAC
GTGCTGCTTAGTGACTTTCTTGAGCGTCAATGTTAGGAAATCATCGATGGGTCTACTTTCCTGCATTTCCACGACACAGCCAAGCCAAACAAATGCAGCATGATGGGAGAGAATATTCCA
CACGACACGATTGCACTTCGTTCTTTTGATATTGACCCGGATCAGAGGCGCTAAACTTGCTCTGTGTCTTCGGTTAGGAAATCATCGACGGGTCTACGGGAGTGGCTACCGCGGCCGATC
TGATTGAACGCAGACAACGCTCTGAGTTCCAATATGTAGGTTGCCTCAGGTCCTCCTTTTTTTTGTTTTCCCCTTCACATCCTTCTTACCACCATAGCTGATGCCCTTGGTTCTTTCTTC
AGCAAGCATCAAAGGCACCCTCACAGCAGCCATACAGAGGTGAGATTGCAAATTATGTACACTGACTCGGTTCGCTATCTCTTCATTCTATCTGTCTCTTTTGTTGACTGATGAAAACTG
AAAATTCTTCTCAAGGCGAAGCCAGAGCTCGTCCCATCTCTGTTGACATTGGCACTGAACGACGCCATGACATATGACAAGAGGTCTGGTCTATAAATGGCTTACTAAAATCAGTTGTCA
ATTGCGCCCTCTATACATGGCATACATGGAACTAACCTATGGTGGCACTGGCTGTTAATTTGACTCTTCTGTGAACTGTAGGCCACAAAGTCAGGAGGGCCAAATGGATCGATCAGGCTA
AGAGGTACTAGCTAGCAGTTTCTGTCTCTACATCCTTGTGTTGATGTTGCAATTATGCTCTGCAGATGGCAACCTAACAAGTTTTTGACCTTGTTGTTTGATCAATTCCTGTTAAACAAT
AAAGTGCAGAAATAAACAGACCTGAAAACAGTGGGCTTTCTGCTGCTTTGGATATGCTAACTGACGCGAAGAAAGAGATTGATTCCTATTCCAAGGGAGGTCCCATTGCATTTGCAGATC
TGATCCAAATAGCCGCGGTACTTAATTACTCCCTCCGTCCAAAAATAAGTGACTTGGATTTGTATAAATTCTTTTACAAACGCACGCCACTTATTTTGGGACTGAGGAAGTACTTAACAT
TATTTGGTTCACATTATTTTTGTGGATCATTACTAACTGGATCTTCTGTAATTTTTTCTATTATTGAATGATAGACTGCTTAAATTTGCTTGTACCCGCAACAGCACAACAGGCGCTCAA
GCAAACATTCCTTGACGCAGCCATTGCAAAGACCGGTGGGAACGAAGAAAAGGGAAGGACCCTGTACTCTGCATACGGTTCAAGTGGACAGAGGTATTCGTTCATTCTCCACGGCCCGAG
TCTGTCTGATCATCTTTATTACATGCATGATTTTACTAATATAAGGTGATATGCATTTTTGTTTGCGTCTATTACCATAGTGGGGTCTTTTCGACAAGATATTCGGGCGCGAGGATACAC
AAGAACCTGATCCAGAGGGAAGGGTGCCTAAGTGGAGCAGTGCTTCAGTGCAGGAAATGAAGCATAAGTTCATCGCCGTCGGTTTCGGTCCTCGTCAGAGGTCACTACTCATTTTGCTTG
ATAACCTGTTCTTTCATTCTTTCTATCACTGTTTTAGCCTTCGGTAGGACTGCAAAAACTGTGGTTCAGTTCAGTCTCACCAATACCATGACAATCCTACTGCAGCTTGCTGTGATGTCA
GCATTCTTGGGTCCTGACCAAGCCGCCACGGAGGCGAAACTGATAGCTGATCCAGATTGCCGCCCATGGGTCGAGAAGTACCAGCGCAGTCGTGAGACCGTCTCCCGGACTGACTACGAG
AGGCAAGAAAGATTGAACGATTCTGGCAATGCCAATGCTGCAGGACATACAGCTCTGATGTTTAAACTTTTGCTTCTGAACGTATATATCTTGCAGGTTGACCTGATAACCACGCTGACG
AAGCTCAGTTACCTCGGCCAGAAGATAAACTACGAGGCGTACACGTATCCCAAGCAGAAGATTAACCTGGGTAAACTGAAGCTGTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGCGCTGGTCGTCCAAGGGAGGAGAATCAATGGCGGGCGCGACCTTTCTCTCCGCTCCCGCGCTGCTTGGCCCCCGCGCCGGCGGCCTCCCTTCCGTCTCAGTCACATCATCCCCGGCG
CGCAGACAGCATGCATACATTCAGGTATGCTGTCACGCCAAAGCCGGGGGCTCCGAGGCTGCTGCCGCCGCACGCGAAGAGCCTCCGCGGTTCCGCAGAAGAGATTTGATCGGGGGCTGC
ATGGGCACCGCCGTTGGCTTGGAAATCATCGACGGGTCTACGGGAGTGGCTACCGCGGCCGATCTGATTGAACGCAGACAACGCTCTGAGTTCCAATCAAGCATCAAAGGCACCCTCACA
GCAGCCATACAGGCGAAGCCAGAGCTCGTCCCATCTCTGTTGACATTGGCACTGAACGACGCCATGACATATGACAAGGCCACAAAGTCAGGAGGGCCAAATGGATCGATCAGGCTAAGT
GCAGAAATAAACAGACCTGAAAACAGTGGGCTTTCTGCTGCTTTGGATATGCTAACTGACGCGAAGAAAGAGATTGATTCCTATTCCAAGGGAGGTCCCATTGCATTTGCAGATCTGATC
CAAATAGCCGCACAACAGGCGCTCAAGCAAACATTCCTTGACGCAGCCATTGCAAAGACCGGTGGGAACGAAGAAAAGGGAAGGACCCTGTACTCTGCATACGGTTCAAGTGGACAGTGG
GGTCTTTTCGACAAGATATTCGGGCGCGAGGATACACAAGAACCTGATCCAGAGGGAAGGGTGCCTAAGTGGAGCAGTGCTTCAGTGCAGGAAATGAAGCATAAGTTCATCGCCGTCGGT
TTCGGTCCTCGTCAGCTTGCTGTGATGTCAGCATTCTTGGGTCCTGACCAAGCCGCCACGGAGGCGAAACTGATAGCTGATCCAGATTGCCGCCCATGGGTCGAGAAGTACCAGCGCAGT
CGTGAGACCGTCTCCCGGACTGACTACGAGGTTGACCTGATAACCACGCTGACGAAGCTCAGTTACCTCGGCCAGAAGATAAACTACGAGGCGTACACGTATCCCAAGCAGAAGATTAAC
CTGGGTAAACTGAAGCTGTGA

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGCGCTGGT CGTCCAAGGG AGGAGAATCA ATGGCGGGCG CGACCTTTCT CTCCGCTCCC GCGCTGCTTG GCCCCCGCGC CGGCGGCCTC CCTTCCGTCT CAGTCACATC ATCCCCGGCG CGCAGACAGC ATGCATACAT TCAGGTATGC TGTCACGCCA AAGCCGGGGG CTCCGAGGCT GCTGCCGCCG CACGCGAAGA GCCTCCGCGG TTCCGCAGAA GAGATTTGAT CGGGGGCTGC ATGGGCACCG CCGTTGGCTT GGAAATCATC GACGGGTCTA CGGGAGTGGC TACCGCGGCC GATCTGATTG AACGCAGACA ACGCTCTGAG TTCCAATCAA GCATCAAAGG CACCCTCACA GCAGCCATAC AGGCGAAGCC AGAGCTCGTC CCATCTCTGT TGACATTGGC ACTGAACGAC GCCATGACAT ATGACAAGGC CACAAAGTCA GGAGGGCCAA ATGGATCGAT CAGGCTAAGT GCAGAAATAA ACAGACCTGA AAACAGTGGG CTTTCTGCTG CTTTGGATAT GCTAACTGAC GCGAAGAAAG AGATTGATTC CTATTCCAAG GGAGGTCCCA TTGCATTTGC AGATCTGATC CAAATAGCCG CACAACAGGC GCTCAAGCAA ACATTCCTTG ACGCAGCCAT TGCAAAGACC GGTGGGAACG AAGAAAAGGG AAGGACCCTG TACTCTGCAT ACGGTTCAAG TGGACAGTGG GGTCTTTTCG ACAAGATATT CGGGCGCGAG GATACACAAG AACCTGATCC AGAGGGAAGG GTGCCTAAGT GGAGCAGTGC TTCAGTGCAG GAAATGAAGC ATAAGTTCAT CGCCGTCGGT TTCGGTCCTC GTCAGCTTGC TGTGATGTCA GCATTCTTGG GTCCTGACCA AGCCGCCACG GAGGCGAAAC TGATAGCTGA TCCAGATTGC CGCCCATGGG TCGAGAAGTA CCAGCGCAGT CGTGAGACCG TCTCCCGGAC TGACTACGAG GTTGACCTGA TAACCACGCT GACGAAGCTC AGTTACCTCG GCCAGAAGAT AAACTACGAG GCGTACACGT ATCCCAAGCA GAAGATTAAC CTGGGTAAAC TGAAGCTGTG ATGCGATGGA TCACTGCTCT CGGCATGTCT GCTAGCCATT GCCCTTCAAA AGTCGAGGAC TTCACTACAA TATATACGTA TCTACGTGTG GAGAGTGATT TTGATTTTGC CGGGAGCATT CGTGTTTTCG TTTTGTTGTT TATACGACGA ATCTCTGTAA AGGTAGTTGT TGGAGACGTT CAGCTCTTCG GCTAGCTAGA TGGGTGATTG TGTCTGTAGC
TTTCCCACTA TTTTGACGCT GATTTTTGGA GAAATAACTC GTGTATTATT CCTATGGACC TAAAAATAGT ACGAGTACTT CTAGTTTAAC TGAGA

Retrieve as FASTA