1. Browse the Database
  2. View Redoxidase
Entry information : BdiAPx08 (Bradi5g20670)
Entry ID 7925
Creation 2011-01-17 (Toky Ramarohetra)
Last sequence changes 2011-01-17 (Toky Ramarohetra)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2011-02-08 (Toky Ramarohetra (Scipio))
Peroxidase information: BdiAPx08 (Bradi5g20670)
Name (synonym) BdiAPx08 (Bradi5g20670)
Class Ascorbate peroxidase    [Orthogroup: APx2004]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Brachypodium
Organism Brachypodium distachyon    [TaxId: 15368 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BdiAPx08
start..stop		 S start..stop
TaAPx08-1B 614 0 5..366 23..377
TaAPx08-1A 596 0 11..366 1..352
TaAPx08-1D 594 0 5..366 23..379
SbAPx09 561 0 11..366 1..351
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 23467732..23467869 136 N° 2 23467961..23468083 121 N° 3 23468285..23468360 74 N° 4 23468448..23468482 33
N° 5 23468579..23468644 64 N° 6 23468763..23468803 39 N° 7 23468924..23469054 129 N° 8 23469262..23469368 105
N° 9 23469476..23469613 136 N° 10 23469739..23469873 133 N° 11 23469968..23470078 109  
join(23467732..23467869,23467961..23468083,23468285..23468360,23468448..23468482 ,23468579..23468644,23468763..23468803,23468924..23469054,23469262..23469368,234 69476..23469613,23469739..23469873,23469968..23470078)


exon

Literature and cross-references BdiAPx08 (Bradi5g20670)
DNA ref. Phytozome 12:   Bd5 (23467732..23470078)
EST ref. GenBank:   GT832371.1 [3' end]  GT788045.1 [Fragment]
Protein sequence: BdiAPx08 (Bradi5g20670)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   366 (308)
PWM (Da):   %s   39187.09 (35047.6) Transmb domain:   %s   i7-29o
PI (pH):   %s   9.02 (7.50) Peptide Signal:   %s   cut: 23 range:23-330
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MRWSSKGGESMAGATFLSAPALLGPRAGGLPSVSVTSSPARRQHA
YIQVCCHAKAGGSEAAAAAREEPPRFRRRDLIGGCMGTAVGLEIIDGSTGVATAADLIERRQRSEFQSSIKGTLTAAIAKPELVPSLLTLALNDAMTYDKATKSGGPNGSIRLSAEINRPE
NSGLSAALDMLTDAKKEIDSYSKGGPIAFADLIQIAQQALKQTFLDAAIAKTGGNEEKGRTLYSAYGSSGQWGLFDKIFGREDTQEPDPEGRVPKWSSASVQEMKHKFIAVGFGPRLAVM
SAFLGPDQAATEAKLIADPDCRPWVEKYQRSRETVSRTDYEVDLITTLTKLSYLGQKINYEAYTYPKQKINLGKLKL*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 5, 10 introns), 15 ESTs. Strain="Bd21".
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCGCTGGTCGTCCAAGGGAGGAGAATCAATGGCGGGCGCGACCTTTCTCTCCGCTCCCGCGCTGCTTGGCCCCCGCGCCGGCGGCCTCCCTTCCGTCTCAGTCACATCATCCCCGGCG
CGCAGACAGCATGCATACACGTATGTGCGCGTCCCGATTTCTGCTCGACTTGTGAGTTCAAATTAGACAACGAGAAAAAGGCACCAAGGTTTCTTGACTAACTCCCTGCAGATTCAGGTA
TGCTGTCACGCCAAAGCCGGGGGCTCCGAGGCTGCTGCCGCCGCACGCGAAGAGCCTCCGCGGTTCCGCAGAAGAGATTTGATCGGGGGCTGCATGGGCACCGCCGTTGGCTTGTGGTAC
GTGCTGCTTAGTGACTTTCTTGAGCGTCAATGTTAGGAAATCATCGATGGGTCTACTTTCCTGCATTTCCACGACACAGCCAAGCCAAACAAATGCAGCATGATGGGAGAGAATATTCCA
CACGACACGATTGCACTTCGTTCTTTTGATATTGACCCGGATCAGAGGCGCTAAACTTGCTCTGTGTCTTCGGTTAGGAAATCATCGACGGGTCTACGGGAGTGGCTACCGCGGCCGATC
TGATTGAACGCAGACAACGCTCTGAGTTCCAATATGTAGGTTGCCTCAGGTCCTCCTTTTTTTTGTTTTCCCCTTCACATCCTTCTTACCACCATAGCTGATGCCCTTGGTTCTTTCTTC
AGCAAGCATCAAAGGCACCCTCACAGCAGCCATACAGAGGTGAGATTGCAAATTATGTACACTGACTCGGTTCGCTATCTCTTCATTCTATCTGTCTCTTTTGTTGACTGATGAAAACTG
AAAATTCTTCTCAAGGCGAAGCCAGAGCTCGTCCCATCTCTGTTGACATTGGCACTGAACGACGCCATGACATATGACAAGAGGTCTGGTCTATAAATGGCTTACTAAAATCAGTTGTCA
ATTGCGCCCTCTATACATGGCATACATGGAACTAACCTATGGTGGCACTGGCTGTTAATTTGACTCTTCTGTGAACTGTAGGCCACAAAGTCAGGAGGGCCAAATGGATCGATCAGGCTA
AGAGGTACTAGCTAGCAGTTTCTGTCTCTACATCCTTGTGTTGATGTTGCAATTATGCTCTGCAGATGGCAACCTAACAAGTTTTTGACCTTGTTGTTTGATCAATTCCTGTTAAACAAT
AAAGTGCAGAAATAAACAGACCTGAAAACAGTGGGCTTTCTGCTGCTTTGGATATGCTAACTGACGCGAAGAAAGAGATTGATTCCTATTCCAAGGGAGGTCCCATTGCATTTGCAGATC
TGATCCAAATAGCCGCGGTACTTAATTACTCCCTCCGTCCAAAAATAAGTGACTTGGATTTGTATAAATTCTTTTACAAACGCACGCCACTTATTTTGGGACTGAGGAAGTACTTAACAT
TATTTGGTTCACATTATTTTTGTGGATCATTACTAACTGGATCTTCTGTAATTTTTTCTATTATTGAATGATAGACTGCTTAAATTTGCTTGTACCCGCAACAGCACAACAGGCGCTCAA
GCAAACATTCCTTGACGCAGCCATTGCAAAGACCGGTGGGAACGAAGAAAAGGGAAGGACCCTGTACTCTGCATACGGTTCAAGTGGACAGAGGTATTCGTTCATTCTCCACGGCCCGAG
TCTGTCTGATCATCTTTATTACATGCATGATTTTACTAATATAAGGTGATATGCATTTTTGTTTGCGTCTATTACCATAGTGGGGTCTTTTCGACAAGATATTCGGGCGCGAGGATACAC
AAGAACCTGATCCAGAGGGAAGGGTGCCTAAGTGGAGCAGTGCTTCAGTGCAGGAAATGAAGCATAAGTTCATCGCCGTCGGTTTCGGTCCTCGTCAGAGGTCACTACTCATTTTGCTTG
ATAACCTGTTCTTTCATTCTTTCTATCACTGTTTTAGCCTTCGGTAGGACTGCAAAAACTGTGGTTCAGTTCAGTCTCACCAATACCATGACAATCCTACTGCAGCTTGCTGTGATGTCA
GCATTCTTGGGTCCTGACCAAGCCGCCACGGAGGCGAAACTGATAGCTGATCCAGATTGCCGCCCATGGGTCGAGAAGTACCAGCGCAGTCGTGAGACCGTCTCCCGGACTGACTACGAG
AGGCAAGAAAGATTGAACGATTCTGGCAATGCCAATGCTGCAGGACATACAGCTCTGATGTTTAAACTTTTGCTTCTGAACGTATATATCTTGCAGGTTGACCTGATAACCACGCTGACG
AAGCTCAGTTACCTCGGCCAGAAGATAAACTACGAGGCGTACACGTATCCCAAGCAGAAGATTAACCTGGGTAAACTGAAGCTGTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCGCTGGTCGTCCAAGGGAGGAGAATCAATGGCGGGCGCGACCTTTCTCTCCGCTCCCGCGCTGCTTGGCCCCCGCGCCGGCGGCCTCCCTTCCGTCTCAGTCACATCATCCCCGGCG
CGCAGACAGCATGCATACATTCAGGTATGCTGTCACGCCAAAGCCGGGGGCTCCGAGGCTGCTGCCGCCGCACGCGAAGAGCCTCCGCGGTTCCGCAGAAGAGATTTGATCGGGGGCTGC
ATGGGCACCGCCGTTGGCTTGGAAATCATCGACGGGTCTACGGGAGTGGCTACCGCGGCCGATCTGATTGAACGCAGACAACGCTCTGAGTTCCAATCAAGCATCAAAGGCACCCTCACA
GCAGCCATACAGGCGAAGCCAGAGCTCGTCCCATCTCTGTTGACATTGGCACTGAACGACGCCATGACATATGACAAGGCCACAAAGTCAGGAGGGCCAAATGGATCGATCAGGCTAAGT
GCAGAAATAAACAGACCTGAAAACAGTGGGCTTTCTGCTGCTTTGGATATGCTAACTGACGCGAAGAAAGAGATTGATTCCTATTCCAAGGGAGGTCCCATTGCATTTGCAGATCTGATC
CAAATAGCCGCACAACAGGCGCTCAAGCAAACATTCCTTGACGCAGCCATTGCAAAGACCGGTGGGAACGAAGAAAAGGGAAGGACCCTGTACTCTGCATACGGTTCAAGTGGACAGTGG
GGTCTTTTCGACAAGATATTCGGGCGCGAGGATACACAAGAACCTGATCCAGAGGGAAGGGTGCCTAAGTGGAGCAGTGCTTCAGTGCAGGAAATGAAGCATAAGTTCATCGCCGTCGGT
TTCGGTCCTCGTCAGCTTGCTGTGATGTCAGCATTCTTGGGTCCTGACCAAGCCGCCACGGAGGCGAAACTGATAGCTGATCCAGATTGCCGCCCATGGGTCGAGAAGTACCAGCGCAGT
CGTGAGACCGTCTCCCGGACTGACTACGAGGTTGACCTGATAACCACGCTGACGAAGCTCAGTTACCTCGGCCAGAAGATAAACTACGAGGCGTACACGTATCCCAAGCAGAAGATTAAC
CTGGGTAAACTGAAGCTGTGA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCGCTGGT CGTCCAAGGG AGGAGAATCA ATGGCGGGCG CGACCTTTCT CTCCGCTCCC GCGCTGCTTG GCCCCCGCGC CGGCGGCCTC CCTTCCGTCT CAGTCACATC ATCCCCGGCG  CGCAGACAGC ATGCATACAT TCAGGTATGC TGTCACGCCA AAGCCGGGGG CTCCGAGGCT GCTGCCGCCG CACGCGAAGA GCCTCCGCGG TTCCGCAGAA GAGATTTGAT CGGGGGCTGC  ATGGGCACCG CCGTTGGCTT GGAAATCATC GACGGGTCTA CGGGAGTGGC TACCGCGGCC GATCTGATTG AACGCAGACA ACGCTCTGAG TTCCAATCAA GCATCAAAGG CACCCTCACA  GCAGCCATAC AGGCGAAGCC AGAGCTCGTC CCATCTCTGT TGACATTGGC ACTGAACGAC GCCATGACAT ATGACAAGGC CACAAAGTCA GGAGGGCCAA ATGGATCGAT CAGGCTAAGT  GCAGAAATAA ACAGACCTGA AAACAGTGGG CTTTCTGCTG CTTTGGATAT GCTAACTGAC GCGAAGAAAG AGATTGATTC CTATTCCAAG GGAGGTCCCA TTGCATTTGC AGATCTGATC  CAAATAGCCG CACAACAGGC GCTCAAGCAA ACATTCCTTG ACGCAGCCAT TGCAAAGACC GGTGGGAACG AAGAAAAGGG AAGGACCCTG TACTCTGCAT ACGGTTCAAG TGGACAGTGG  GGTCTTTTCG ACAAGATATT CGGGCGCGAG GATACACAAG AACCTGATCC AGAGGGAAGG GTGCCTAAGT GGAGCAGTGC TTCAGTGCAG GAAATGAAGC ATAAGTTCAT CGCCGTCGGT  TTCGGTCCTC GTCAGCTTGC TGTGATGTCA GCATTCTTGG GTCCTGACCA AGCCGCCACG GAGGCGAAAC TGATAGCTGA TCCAGATTGC CGCCCATGGG TCGAGAAGTA CCAGCGCAGT  CGTGAGACCG TCTCCCGGAC TGACTACGAG GTTGACCTGA TAACCACGCT GACGAAGCTC AGTTACCTCG GCCAGAAGAT AAACTACGAG GCGTACACGT ATCCCAAGCA GAAGATTAAC  CTGGGTAAAC TGAAGCTGTG ATGCGATGGA TCACTGCTCT CGGCATGTCT GCTAGCCATT GCCCTTCAAA AGTCGAGGAC TTCACTACAA TATATACGTA TCTACGTGTG GAGAGTGATT  TTGATTTTGC CGGGAGCATT CGTGTTTTCG TTTTGTTGTT TATACGACGA ATCTCTGTAA AGGTAGTTGT TGGAGACGTT CAGCTCTTCG GCTAGCTAGA TGGGTGATTG TGTCTGTAGC 
TTTCCCACTA TTTTGACGCT GATTTTTGGA GAAATAACTC GTGTATTATT CCTATGGACC TAAAAATAGT ACGAGTACTT CTAGTTTAAC TGAGA 

Retrieve as FASTA