View Redoxidase 7993

Entry information : BdiPrx87 (Bradi2g38685)

Entry ID	7993
Creation	2011-02-08 (Toky Ramarohetra)
Last sequence changes	2014-03-28 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2014-03-28 (Christophe Dunand)

Peroxidase information: BdiPrx87 (Bradi2g38685)

Name (synonym)

BdiPrx87 (Bradi2g38685)

Class

Class III peroxidase [Orthogroup: Prx139]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Brachypodium

Organism

Brachypodium distachyon [TaxId: 15368 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	BdiPrx87 start..stop	S start..stop
BdiPrx86	439	2e-156	29..324	25..319
BdiPrx85	420	1.02e-148	30..324	27..323
BdiPrx89	362	7.2e-126	1..322	1..326
BdiPrx83	283	4.51e-94	1..327	1..373

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7993' 'join(38955326..38955536,38956253..38957025)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	38955326..38955536	209	N° 2	38956253..38957025	771
join(38955326..38955536,38956253..38957025)

Literature and cross-references BdiPrx87 (Bradi2g38685)

DNA ref.	Phytozome 12: Bd2 (38955326..38957024)
EST ref.	GenBank: HX809757.1 [5' end] HX848832.1 [3' end]

Protein sequence: BdiPrx87 (Bradi2g38685)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	327 (303)
PWM (Da):	34913.69 (32347.2)	Transmb domain:	i7-29o
PI (pH):	7.9 (7.50)	Peptide Signal:	cut: 35 range:25-327

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MSKRNENVSLSVLLASAVVAILLAAQVNVKPAMAGDYTIGMQTKVRDIVQRNRAVAPGLIRLAFHDCWVKGCDGSVLLERADKQAEMDAPQNGGIRGLDLIQAIKDTLSLDDSTVTCADA
VVYAAREACNVLSRRHIVYAVDGPGSHKDTNASSMADAGALPGPTASFANLAANFNGKGFTPRDVVVLSGAHAVGLAHRPNFEARLTANANEISQKYRNDVNVISNASPNKTAHNNVRDL
DKAETEPGVLDNNYYAANLGKKVLFSSDFALTTDGAALNNMTNFKNDATMWFRLFEDAMARLSRLPAQGADVLQVPRIKCNAPNPAS*

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 2, intron 1) and 2 ESTs. Incorrect prediction in Phytozome (missing sequence due to extra intron). Missing cystein residues.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGTCGAAGCGCAACGAGAATGTGTCTCTTTCGGTGCTCCTGGCCTCGGCTGTCGTGGCGATCCTCCTTGCCGCGCAGGTGAACGTGAAGCCGGCGATGGCCGGCGACTACACCATTGGC
ATGCAGACTAAGGTGAGGGACATAGTGCAGAGGAACCGCGCCGTCGCCCCCGGCCTCATCCGGCTAGCCTTCCACGACTGCTGGGTCAAGGGGTAATTAACTAACTATTGGCAGCAGCTA
ATTTGTTCGTTCATATTTTTTTCAAAAAAGAGGTTGAGATGGATCGGTGTGTTGCTTGGAAAGAGCTAATGTTGAAACCTCCGGTGTCTGCATCAAAATGATGCACACAGCCACGATTAG
CTCATTCATTGCACTGGCATCTCTTCTCAAAACTCAAAACTGAGAAATTAGTTAGTTAGGAAAATAAATAAGAGAAAAGTACTTTTTTCGTTTCTCAACTTGTCGGAAAGTTCGCTTTTC
GTCCCTAAAAAAAATTCGTACTTTTTTCGTCCCTCAATTTTCAAAACCGGACACTTTTAGTCTCTCAGTCCATCCAAAGTGCTTTTCCTAACCACGTGTCTGGTTTTCGTATAGTTTTTT
CACTTATTTTTTTTCAATCAAGATATGGATGATGCAGATGGAGGAGAAGTATAACTAATGCCTGGACGAGATCCAGAGCACAACGACGGCAATTTCAACAGACTCGGCGGTCACGGGATT
AAGTGCAAACTAGACACGTGGCTAGACAAACCGCTTCGGATAGCCTTAAGGACTGATAGTATCCGGTTTTGAAAGTTGAGGATGAAAAAAGTACGAATTGTTTTTTGAAGGGCGAGAAAT
GAACTTTCCGACAAGTTGAGGGACGAAAAAAGTACTTTTCTCAACAAATAATGGCGATTTGATCCTTCATTCATTGTGACACCTGCAGGGTTGTGATGGGTCCGTGTTGCTGGAGAGAGC
CGACAAGCAGGCAGAGATGGACGCGCCGCAGAACGGCGGCATCCGTGGCCTGGACTTGATCCAGGCCATCAAGGACACACTGTCCCTTGACGACAGCACCGTCACCTGCGCCGACGCCGT
CGTCTACGCGGCGCGAGAAGCCTGCAACGTGCTCAGCCGGCGGCACATCGTCTACGCCGTCGACGGGCCTGGCTCCCACAAGGACACCAACGCGTCCTCCATGGCCGACGCCGGTGCCCT
CCCTGGACCAACCGCCAGCTTCGCGAACCTCGCGGCCAACTTCAACGGCAAGGGCTTCACCCCACGGGACGTCGTGGTCCTCTCCGGCGCGCACGCCGTCGGCTTAGCCCACCGCCCCAA
CTTCGAGGCCCGGCTCACGGCCAATGCCAATGAGATCAGCCAGAAGTACCGGAACGACGTCAACGTGATATCGAACGCCAGCCCCAACAAGACGGCGCACAACAACGTCCGGGACCTGGA
CAAGGCGGAGACGGAGCCGGGCGTCCTGGACAACAACTACTACGCCGCCAACCTCGGCAAGAAGGTGCTATTCAGCTCCGACTTCGCGCTCACCACCGACGGCGCCGCGCTCAACAACAT
GACGAACTTCAAGAACGACGCCACCATGTGGTTCCGTCTCTTCGAGGACGCCATGGCCAGGCTCAGCAGGCTCCCCGCGCAGGGCGCCGATGTTCTCCAGGTGCCAAGGATCAAATGCAA
CGCCCCCAATCCGGCAAGCTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

GATCCACAGC CGATCGAGAA GCAGTTGAGT TCGCTAGCTG CAAGAACTAA TCTAGGTAGC TCTAGCTAGC AGCTGGTTGG AGGAGCTGAA TTAGGAGATA TATCTCTCGA TTCGATCATG TCGAAGCGCA ACGAGAATGT GTCTCTTTCG GTGCTCCTGG CCTCGGCTGT CGTGGCGATC CTCCTTGCCG CGCAGGTGAA CGTGAAGCCG GCGATGGCCG GCGACTACAC CATTGGCATG CAGACTAAGG TGAGGGACAT AGTGCAGAGG AACCGCGCCG TCGCCCCCGG CCTCATCCGG CTAGCCTTCC ACGACTGCTG GGTCAAGGGT TGTGATGGGT CCGTGTTGCT GGAGAGAGCC GACAAGCAGG CAGAGATGGA CGCGCCGCAG AACGGCGGCA TCCGTGGCCT GGACTTGATC CAGGCCATCA AGGACACACT GTCCCTTGAC GACAGCACCG TCACCTGCGC CGACGCCGTC GTCTACGCGG CGCGAGAAGC CTGCAACGTG CTCAGCCGGC GGCACATCGT CTACGCCGTC GACGGGCCTG GCTCCCACAA GGACACCAAC GCGTCCTCCA TGGCCGACGC CGGTGCCCTC CCTGGACCAA CCGCCAGCTT CGCGAACCTC GCGGCCAACT TCAACGGCAA GGGCTTCACC CCACGGGACG TCGTGGTCCT CTCCGGCGCG CACGCCGTCG GCTTAGCCCA CCGCCCCAAC TTCGAGGCCC GGCTCACGGC CAATGCCAAT GAGATCAGCC AGAAGTACCG GAACGACGTC AACGTGATAT CGAACGCCAG CCCCAACAAG ACGGCGCACA ACAACGTCCG GGACCTGGAC AAGGCGGAGA CGGAGCCGGG CGTCCTGGAC AACAACTACT ACGCCGCCAA CCTCGGCAAG AAGGTGCTAT TCAGCTCCGA CTTCGCGCTC ACCACCGACG GCGCCGCGCT CAACAACATG ACGAACTTCA AGAACGACGC CACCATGTGG TTCCGTCTCT TCGAGGACGC CATGGCCAGG CTCAGCAGGC TCCCCGCGCA GGGCGCCGAT GTTCTCCAGG TGCCAAGGAT CAAATGCAAC GCCCCCAATC CGGCAAGCTA GGACGATCCG GAGGAAGAGA TCGACGTCCT CGCCGGCCCG CGTGGGCCAA GATTTGAGCA GCATATGACA TGCACGCGTT TATAAATTTT TGTTTGGTAA
TTTTTATATC ATGTTTTTTT TTGTCTACCA ATTGATTTAC TTATGCCAGT ATGTATGTAT TGTAATTTGG TTATTTTTGG AAGAGAAAAG TATAATGTTT TGTCC

Retrieve as FASTA