View Redoxidase 8079

Entry information : EgrAPx-R (Eucgr.C01740 / Egrandis_v1_0.016593m)

Entry ID	8079
Creation	2011-02-04 (Christophe Dunand)
Last sequence changes	2011-07-28 (Catherine Mathe)
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2012-06-19 (Qiang Li)

Peroxidase information: EgrAPx-R (Eucgr.C01740 / Egrandis_v1_0.016593m)

Name (synonym)

EgrAPx-R (Eucgr.C01740 / Egrandis_v1_0.016593m)

Class

Ascorbate peroxidase related [Orthogroup: APx-R001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Myrtaceae Eucalyptus

Organism

Eucalyptus grandis [TaxId: 71139 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	EgrAPx-R start..stop	S start..stop
EguAPx-R	692	0	1..342	1..342
EglAPx-R	691	0	1..342	1..342
EcamAPx-R	691	0	1..342	1..341
CsAPx-R	451	1.05e-160	16..342	10..335

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8079' 'join(29587959..29588190,29588272..29588353,29588964..29589091,29589622..29589692,29589875..29589917,29589994..29590090,29590261..29590344,29590903..29591024,29591385..29591451,29591899..29592001)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	29587959..29588190	230	N° 2	29588272..29588353	80	N° 3	29588964..29589091	126	N° 4	29589622..29589692	69
N° 5	29589875..29589917	41	N° 6	29589994..29590090	95	N° 7	29590261..29590344	82	N° 8	29590903..29591024	120
N° 9	29591385..29591451	65	N° 10	29591899..29592001	101
join(29587959..29588190,29588272..29588353,29588964..29589091,29589622..29589692 ,29589875..29589917,29589994..29590090,29590261..29590344,29590903..29591024,295 91385..29591451,29591899..29592001)

Literature and cross-references EgrAPx-R (Eucgr.C01740 / Egrandis_v1_0.016593m)

DNA ref.	Phytozome 12: scaffold_3 (29587959..29592001)

Protein sequence: EgrAPx-R (Eucgr.C01740 / Egrandis_v1_0.016593m)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	342 (298)
PWM (Da):	36512.48 (32107.1)
PI (pH):	7.46 (8.78)	Peptide Signal:	cut: 34 range:34-331

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MASPSPSTTHLSPLTCCSSSSSLSSHPSSRRTKFEFPANSQRSSPSPIASRAGAIASPSSSTPGAASSGDHAPVRGRSVAGLAATLPFLLQLRGYTEGIVADAAELDNDEYTMIKEEVRK
VVSKVKAAGVLRLVFHDAGTFEMGENSGGMNGSIVYELERPENAGLKKPVKILEKAKGEVDAKRPVSWADMIAVAGAEAVSVCGGPTIPVVLGRLDSMKPDPEGRLPEETLDALGLKQCF
QRKGLSTQELVALSGAHTLGSKGFGNPVVFDNSYYKVLLEKPWMSSAGMPSMIGLPSDRALVEDNECLRWIEKYANDQNLFFKDFENAYVKLVNSGARWRSL*

Retrieve as FASTA

Remarks

Complete sequence from genomic. Incorrect prediction from Egrandis_v1_0.016593m where intron in PS is not predicted!!!. No EST. One other alternative transcript: Egrandis_v1_0.018459m (low identity for the PS when compared with PtAPx-R).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTTCACCGTCGCCGTCGACGACCCACCTCTCCCCACTCACCTGCTGCTCCTCCTCCTCCTCCCTTTCCTCCCATCCCTCTTCTCGCAGGACGAAATTCGAATTCCCCGCCAATTCC
CAACGGTCTTCTCCCTCCCCCATCGCCTCTCGCGCCGGAGCCATCGCCTCTCCCTCAAGCTCGACCCCCGGCGCCGCTTCTTCCGGTGACCACGCCCCCGTGCGCGGTCGATATGTTTCG
CGAATCCGGTCGATCGCGATCTTTCGGAGCTCGCAGCTGGAGACCGCGTCTCGAGGAGGAGGAGGAAGCTCATAGCCGTGGCGGGCCTGGCGGCCACATTGCCGTTTCTCCTTCAGCTGC
GCGGTTACACGGAGGGAATCGTCGCCGACGCCGCCGAGAGTAAGCTCGACGCTCTTTGCTTGACGAAAGTCCATGTCTTTATTGGTTGGAACGAATGAAACGGGAATTTCGAGGGAGATT
GAGATGCTTTTGAGCTTTGGAGTTGAGCCTGCGGAGCGAAAGAAGGCTATGCGTTTTCGTCGGTGGTCGGATTATGGGTTTTGCAGCTGCTTCTTCCGGTGATCAGTTTGTGTGTATGTG
TGCATGCTACGGAGTTGTCCCGCCGAAATGACGCTTTTTGCTTCCTTTAAAGGACTTACTTGCCGTTTAAAGTAGGAGGTCCAGGTGTGGTCCTTCGGATTATGAGATTTTAGTTTGTGT
TTCCGGCTTGCTCATTCACTGACTTCCTGGATTTTAGTATCTGTAAGCTGTAACTGTGAAGTGTCTTGTTTCTCAACATTGATGTTATGGACACCGCATTCAGCTGGGGAAAAACCATTT
TGGGTGATGGTTTGATGGGTCGAAATTGCGATTCGGAAGTACTAATTGGATAGGGCTGTGAGTTTGATATTTTGTTTATCGTGACCTTGGGGCTGCATCTGTATTTGTGTTGACTTGGGG
CATTTGGATATGTCCATGACTGTTGGTTTTTCATGTTCGTATATCAAAGATTAGATAATGATGAATACACGATGATAAAGGAAGAGGTCAGAAAGGTAGTTTCCAAGGTGAAGGCTGCTG
GTGTGCTTCGTTTGGTATTTCATGATGCTGGAACCTTTGAAATGGGTGAAAACTCAGAGGTATTTTACATGGACAGAAAGTTAAAGTTCTACAAATAATGATACTCGACATCAGTAACTG
TGCTCCATATCTCTGGCTACAATTTTTGAATGCCTACTAATCGATCCAAATTGTTTTATCCTCTTTTCCCCATAATTGAACTTTTGAGCTGAAGCTAAGATGATGCATATATTGATTTCA
TCTGAATTAGGGGGATATAGCTCTCATTTGCCAAAAAAGTTAGATAATCCTTGTAAATGGGCATAACTTTTTTTTGTCATGGTGGTTTACTAAATGAACAAGGGCAAGTAATTCTATGAC
TGTTAAAGCAACTACAGACTCTAATGGACCTTTATAAATGAATGATCAATCATGGAGAGCAGTATCATTCATACTACCTGTATTTGTGAACTAATGGTCATGTCCGATTCTTTTAATGCA
TGCACATACTTCTTTTGAGTTGAAAATTTTCTGCGTCGTGCTTTTTTGTCTGAGTATGGATTTCAATCCTCATATTGTAATTCTAATATGTTTTTGTGTCAATATCCAGGTGGTATGAAT
GGTTCCATAGTTTATGAACTTGAAAGGCCTGAAAATGCTGGGCTAAAAAAGCCTGTGAAGAGGTATGTTTTCTTTTATTACATCCTCAAGCTTAGCATCCATTCTGGAGATGCAACATTT
CATTTCAACTGGTGTACTCCCTCATGCATTTCTGGACTGCTAGAAGTTCCTGTATCTTATGTCTAGAACAGTCAACTCCGGTTCATCTTCAGGCTAACTCGTCAGTCATTGTGTTGTTGT
TTAGATACTAGAGAAAGCAAAGGGTGAGGTGGATGCAAAGAGACCAGAGGTGATTTTTTTGAGTGTTATATTCTATATGCTGATGGTATGATTGTGGTGATATAGATGGAACTTTCCTCT
CTCAGTATCCTGGGCAGACATGATAGCTGTGGCTGGAGCTGAAGCAGTTTCTGTTTGTGGAGGTCCAACTATTCCAGTTGTTCTGGGCAGACTTGACTCAATATGTAAGAAGCTATTTCC
AATTCAATTACTACTGTTCTGAAGATGCGTTGATGGCAGACAAAACATTATTTCACTCATTTAGTATTGTCAGTATTGCAAGATTCTTTGCATGTCTCCATCTTTGTGCATAGTCCCAAG
CTAATATTGGTTTGGTTTCATTTCTTTATTGAAGGAAGCCTGATCCTGAAGGAAGACTTCCCGAAGAAACTCTTGATGCTTTGGGTTTAAAGCAGTGTTTTCAGAGGAAGGGCTTATCTC
GTGAGTTGCTATCCCATGTACATGTCGAATGATGCTTGCAAATTAAATGAAGTATTGTTTATTGACTATTGCATATTGTTATGCATCTTACTGCTGATGGTTAAACTGTTTAATAGATAT
TTCACCGGTCAACATAGAATTGGTTGTTTAGTCAACTGTGATACGTTATGTTTTGCAATTTCAGGATGATAGATTCAGAGCCGCCACAACTGAGGGGAAACTTTGGGACAGCCTTTGCTA
AAACACACACACAAAACAACCCCAAAAAAGCAAGACAACTATGCTTCCTTCTGTGGCAATAAGCATTCCTTCTTTGTTTTTCCCCTCCATTCCAAAAAAATTATGCCCCCTCTATGAGTT
ATTATTCTGACAGTATTAGCTGCATGATTACAAAAATGAAGCTTTCGAAACAGACTAAGAACATGTTTGATTGTTCCTGCTATGGACTCTGTTTGATTTTTTTTTGCTATAGAAATCTGT
CCTTTCAGTTTCTTACACTATTCTGTAGTTTCTTCTCTCAGCAAAAGGAACATATTGATGTTGTCCTCATCCTCTCAGGACACAGGAACTTGTTGCATTATCTGGAGCCCATACCCTCGG
CAGTAAAGGTTTTGGGAATCCGGTTGTTTTTGACAATTCATACTACAAGGTTCTTCTAGAGAAACCCTGGATGTCTTCAGAGGTAGCGAAAAAACATTGATGGTTCTCATGTTCTTCTGT
TAGACTTTTTGCCGGACGTAGTTACGTTGGCCTACTGGTTCTAGTTTGTTGTAGGTAAAGCATTATTTGGCATGAAATTAGTCCTGCCATCAGCTTTCTAACCCAGGAAAAGATTCTATA
TCTGATACTATGGAGTCATAATTGTGGTATTGTTTCAATAGTTAGCTCTGATGCAGTGGAAATTTATTTAGTCTGTACTGGGAAAAGGTTATTCTCACTTTTTCTGTTGCAAAAGCGACC
TGAGTTTTTCTCATCGGTAATAGTTCTCACTTAAGCTTTGCTCTTAATTATCCCTTGCTTAATTTCCTTTTTCTCAATGCAGCTGGTATGCCAAGTATGATTGGACTTCCTTCTGATCGT
GCACTTGTTGAGGACAATGAATGCTTAAGAGGTTACTGATTTGATATCCCTACTATTTCCTTTTTACTAGGAAGATGGGAACAGTTTAGCCATATCTTTCTGGCCATAGACTATTATGGT
GAGATATATATATATCGCTGTCACTGGCACTTGTCAACTTTCAGGGATGCACCATTATTGCCACTTTTGATTTTCTTTTTCTCATGATTCTGGATAAAAGTTGGCTTTTGTCTTAATGAT
CCAGTTAAATCCACATTCCATAAATATGGGAGGTGCTATATTATCATGGCCTGTTTATGCTTCTGAGAAAGCAATGTAGAATGGAAATGTGCCGACACAACAAACATAAGTAGCCAGTCT
GAAGTAATTAGTATCACCTGATTTACTATGGATATTTTGCATGAGAATGTTCTGTTTAATGTGATATTTGTTTCTTTTATTTGCTCGATCATGATACCTATATATTTTATATATACAGAT
GGATTGAGAAATATGCAAATGATCAGAATTTGTTCTTCAAAGATTTTGAGAATGCTTATGTCAAGTTAGTGAATTCTGGTGCAAGGTGGAGGAGCTTGTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA