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Entry information : SmRboh10-1_16 (SmRboh10a_16)
Entry ID 8143
Creation 2011-02-23 (Christophe Dunand)
Last sequence changes 2011-02-23 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-02-23 (Christophe Dunand)
Peroxidase information: SmRboh10-1_16 (SmRboh10a_16)
Name (synonym) SmRboh10-1_16 (SmRboh10a_16)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh005]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmRboh10-1_16
start..stop		 S start..stop
SmRboh07-2_1 1742 0 1..845 1..845
SmRboh07-1_16 1244 0 174..845 1..695
SmRboh02-2_137 930 0 14..845 59..902
SmRboh02-1_19 916 0 14..845 52..895
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2215219..2215804 584 N° 2 2214774..2214933 158 N° 3 2214632..2214680 47 N° 4 2214054..2214386 331
N° 5 2213488..2213874 385 N° 6 2213325..2213420 94 N° 7 2213152..2213267 114 N° 8 2213001..2213103 101
N° 9 2212854..2212927 72 N° 10 2212642..2212801 158 N° 11 2212445..2212600 154 N° 12 2212270..2212398 127
N° 13 2212130..2212208 77 N° 14 2211960..2212069 108  
complement(join(2211960..2212069,2212130..2212208,2212270..2212398,2212445..2212 600,2212642..2212801,2212854..2212927,2213001..2213103,2213152..2213267,2213325. .2213420,2213488..2213874,2214054..2214386,2214632..2214680,2214774..2214933,221 5219..2215804))


exon

Literature and cross-references SmRboh10-1_16 (SmRboh10a_16)
DNA ref. Phytozome 12:   scaffold_16 (2215804..2211960)
Protein sequence: SmRboh10-1_16 (SmRboh10a_16)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   845 (327)
PWM (Da):   %s   96603.72 (35629.5) Transmb domain:   %s   o319-341i370-392o428-450i475-497o507-524i657-674o
PI (pH):   %s   9.24 (4.60) Peptide Signal:   %s   cut: 18 range:18-344
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MEVCPKSPGDEDNVDESRMLELTIDVRDDNVRVRSVSALDDRCDD
PQPSGRITLASLLRHTTQSGRFISKQISQELELIRNWAASTPRSRSRSRPSSPDRDRLVKILALSRSNSAVSSRS
SASQQQPRIRKQQSGDLFLARSRSGAETALQGLRYISRAIE
SADQKAVWEAVEMRFQQLAKPDGMLDRGDFGLCIGMPDSREFTGELFDALARRKHQNLQCINKEELYEFWLQLSDQSFDSRIQIFFDMCDKDADGRITEEEVKLWQLESLMLGQFASLAQDGYLNYSQTWSQTLAFEQSGKIILCARKIKYFVIENWQRVWVVGLWIFAMCGLFLWKFFAYKQTSAFKLLGYCLCSAKG
AAETLKLNMALVLLPIIAGAIVAGVGIHATVHLACDFPRIIRASEEEFMIYLGRGFHYKQPTYVGILVSIEGVTGISMVIMMSIAFVLATRWFRRNLVRLPWPLHRLTGFNAFWYSHHLF
MVVYVLLLLHSIFLFFTNDWVAKSTWMYLSVPVLLYSVERILSAFRARHFTVQVVKAAIHPGNVLALKMTKPPTFKYKSGMYLFIKCISISPFEWHPFSITSAPSDRHLSVHIRTVGDWT
EELRRIFSALGGLAEKENVLESESSDISIIRHRFPKLQIDGPYGAPAQDYQKYDVLLLVGIGIGATPFISVLKDMLNQIKLADQQFLSMKQIRSPRKRNERKLQCPTNAYFYWVTREQGS
FEWFRGVLNEVAEIDNKAVIEMHNYLTSVYEEGDARSALITMMQAFHHAKNGVDIVSGTRVRTHFARPKWYKVFSRLANIHTNSRIGVFYCGPMVLARELDALSSEFNQISNSKFEFHKE
NF

Retrieve as FASTA  
Remarks Allelic variant not found in scaffold_1!!!
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAAGTATGTCCTAAATCGCCAGGGGACGAGGACAATGTGGACGAATCCAGGATGCTGGAATTGACAATCGATGTGCGCGACGACAATGTAAGGGTGAGGAGCGTGAGCGCGCTGGAC
GATCGCTGCGACGATCCACAGCCCAGCGGCAGGATCACGCTGGCGAGCTTGCTGCGCCACACGACCCAGTCGGGGCGATTCATCTCCAAGCAAATCTCCCAGGAGCTGGAGCTGATTCGC
AACTGGGCGGCGAGCACCCCGCGATCGAGGTCGCGGTCGCGGCCCAGCTCGCCGGATCGCGACCGCCTGGTGAAGATCCTGGCGCTGAGCAGGAGCAATAGCGCGGTGTCGTCGCGATCG
TCGGCATCGCAGCAGCAGCCGCGAATCCGCAAGCAGCAGAGTGGGGATCTGTTCCTGGCGCGATCGAGATCCGGGGCCGAGACTGCGTTGCAGGGGCTCCGATACATCAGCCGCGCGATC
GAGAGCGCGGACCAAAAGGCGGTGTGGGAGGCGGTGGAGATGAGGTTTCAACAGCTCGCCAAGCCGGATGGGATGCTCGATCGTGGCGATTTTGGCCTGTGCATTGGTGAGCAATTCCAA
TTCCTCTCTCTCTCTCTCTCACACACACACACACACACACTCACAAATTTCCATGATGGATCAAAGTTCTTGCATGATTGGATTGCCTCTACAGGTTCTACATGTTTCTCGTGGTCCATA
GCAAGAATTTCTTGACACGTTTCCAGACTTTTGACATTGTTCTTCCCCATTTTGCGTTCTTCTCCTCCCAAGCTCACATAAAACTTTTCTTTTTCTTTTATCTGATTTCTCGGCTGAAAT
CTCTCAAGCTTGCAATGGTTTTTTCTTCCAGGGGGATGCCAGACTCGAGGGAATTCACTGGCGAGCTTTTCGACGCGCTTGCACGGAGGAAGCACCAAAACCTCCAGTGCATTAACAAAG
AGGAGCTCTACGAGTTTTGGTTGCAGCTATCTGACCAAAGCTTCGACTCCAGGATCCAAATCTTTTTCGATATGTAAGCGCATCACTCCCACTCGTCTCACGTTTTAAATAATCTCATTG
CCCGCCACCTTCTTATCGTTTTCTATCTTGTTCTCCTATAATTTAGGTGTGTGACAAGGACGCAGATGGACGTATCACCGAGGAAGAAGTGAAAGAGGTGCGTGGAATTTAGCTGATAGG
TTCCACTTCTATCTTAAATACACTACTCTGTCTTTGGTTTTCGTCCCAGATTATTATTCTCAGCGCTTCGGCCAACAAGCTATCAAAGCTCAACGAGCAAGCCGAGGAATATGCGGCCCT
CATCATGGAAGAGCTGGATCCTAGCGGAATCGGCTACATTGAAGTAAGTTTCAAGTTTATAAAACCTTCACCACCTTTTCAATCTCTTCTTTGATTTGCTAGCTCTCTGGCAGCTCGAGA
GTTTGATGCTGGGACAATTCGCATCACTAGCACAAGATGGTTATCTCAATTACAGCCAAACTTGGAGCCAGACTCTGGCATTTGAACAATCCGGGAAGATCATACTCTGTGCCAGGAAGA
TCAAATACTTCGTCATCGAGAACTGGCAGCGTGTCTGGGTGGTGGGCTTGTGGATCTTTGCAATGTGTGGGCTTTTTCTCTGGAAGTTCTTCGCATACAAGCAAACCTCGGCTTTCAAGC
TTCTCGGCTACTGCCTTTGCTCGGCCAAAGGAGCCGCCGAGACACTCAAGCTCAACATGGCTTTGGTTCTCCTCCCGGTTTGCAGGAACACCATCACTTGGCTTCGCTCCACGATCGTGG
GAAGTGTTGTTCCATTCGATGACAGTCTAAACTTCCACAAGGCAAGCGTTTAGAACTAAAGTTTCTGAGAACCAAATAGTGAAGTAGAAAGTTCGTGCTGTGGGTTCTAAGTTCCTGGTG
ACTGATACGTTTGCAGATATAATTGCAGGAGCCATCGTTGCGGGGGTTGGAATCCACGCGACGGTTCATCTCGCGTGTGATTTTCCCAGGATCATTCGGGCGAGCGAGGAAGAGTTTATG
ATCTATCTCGGGCGAGGGTTCCACTACAAGCAGCCAACTTACGTGGGGATCTTGGTTTCTATAGAGGGTGTTACAGGGATTAGCATGGTGATTATGATGAGCATCGCGTTCGTGCTGGCA
ACGAGATGGTTTCGTAGGAATCTCGTGAGGCTCCCTTGGCCCTTGCACAGGTTGACGGGGTTTAACGCATTTTGGTACTCCCACCACCTTTTCATGGTGGTTTACGTGCTTTTGCTGCTT
CACTCCATCTTCTTATTTTTCACAAACGACTGGGTGGCGAAATCAGTAAGCTGGTTACAGTTTGTTTTCCTAGCATGTTGTCCTAACAAAAGTATGAGTTTTGATCTGGTAGACACATGG
ATGTATCTCTCTGTGCCAGTGCTTCTTTACTCAGTGGAGAGGATCCTCTCAGCATTTCGAGCTAGACATTTCACAGTACAAGTTGTCAAGGTGAGAAGTTTCATTGGATTGTGGAAGTTG
CTGTTAAACTCTTTTGTGTATATGAAGGCGCTGCTATTCATCCTGGAAATGTTCTTGCCTTGAAGATGACAAAGCCACCTACGTTCAAGTATAAGAGTGGCATGTATCTATTTATCAAAT
GTATATCCATCTCTCCTTTTGAATGGTAAGTTAAAGAAAACATTATTTTGGAAGCTATTTACATTGTTTTCAGGCGCATCCATTTTCTATTACCTCCGCTCCTAGTGACAGGCATTTAAG
TGTGCATATACGAACTGTGGGGGACTGGACGGAGGAGCTTAGAAGAATCTTCTCCAAGGTAAGTAGAAAACACTTAGGATAGTATTGTTATTTTGCTTAGGTTTGTTCAAAAGATCTCTT
TTGTTTTTCAGGCGCACTTGGAGGTCTTGCAGAGAAAGAAAATGTTCTGGAGAGTGAGAGCAGCGACATTAGCATCATAAGACACAGGTACACTATTCAAAGGTTACTTATAACTTTTAA
ATTGCAAGCTTTCTCTCAGATATTCCCAAAGCTTCAAATCGATGGACCTTATGGAGCTCCAGCCCAGGATTATCAGAAATATGATGTTTTACTGCTCGTTGGAATTGGAATTGGAGCAAC
GCCTTTCATCAGCGTTCTCAAAGACATGCTAAACCAAATAAAACTGGCAGATCAACAACAGGTATTATATCTTCATACCTATTATTATTATTGTTTTGCCAGTTTTCTTGTCGATGAAGC
AGATTCGAAGCCCCAGGAAACGAAATGAAAGAAAGCTGCAATGTCCCACGAATGCATATTTCTACTGGGTCACTCGAGAGCAAGGCTCGTTCGAGTGGTTTAGAGGAGTGTTAAACGAAG
TTGCCGAGATTGACAACAAGGTGATGCCTGATCATGACAATATCACACTAAAATATATTCTTGCAGGCGCAGTGATCGAGATGCATAACTATCTCACCAGCGTTTATGAAGAAGGGGATG
CTCGCTCAGCTCTCATCACAATGATGCAAGCTTTTCATCATGCCAAGAATGGTGTTGACATTGTCTCAGGAACAAGAGTAAGATCTTTGATCTGATTTCATTTTGATTGCTTATAATAAA
TCTCTTACCAATACTCAGGTGTTAGAACTCACTTTGCTCGACCCAAATGGTATAAAGTATTTTCCAGGCTTGCCAACATTCATACAAATTCAAGAATAGGTGAGTGAGATTTTCTATTTT
TCTTTTTTATTTTCTTTCTTATTGCATTTGCTTATGAAGGTGTGTCTTCTATTGTGGACCTATGGTTTTAGCTAGGGAGCTTGATGCATTATCAAGTGAATTTAACCAAATATCCAACTC
AAAATTTGAGTTTCACAAAGAAAATTTTTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAAGTATGTCCTAAATCGCCAGGGGACGAGGACAATGTGGACGAATCCAGGATGCTGGAATTGACAATCGATGTGCGCGACGACAATGTAAGGGTGAGGAGCGTGAGCGCGCTGGAC
GATCGCTGCGACGATCCACAGCCCAGCGGCAGGATCACGCTGGCGAGCTTGCTGCGCCACACGACCCAGTCGGGGCGATTCATCTCCAAGCAAATCTCCCAGGAGCTGGAGCTGATTCGC
AACTGGGCGGCGAGCACCCCGCGATCGAGGTCGCGGTCGCGGCCCAGCTCGCCGGATCGCGACCGCCTGGTGAAGATCCTGGCGCTGAGCAGGAGCAATAGCGCGGTGTCGTCGCGATCG
TCGGCATCGCAGCAGCAGCCGCGAATCCGCAAGCAGCAGAGTGGGGATCTGTTCCTGGCGCGATCGAGATCCGGGGCCGAGACTGCGTTGCAGGGGCTCCGATACATCAGCCGCGCGATC
GAGAGCGCGGACCAAAAGGCGGTGTGGGAGGCGGTGGAGATGAGGTTTCAACAGCTCGCCAAGCCGGATGGGATGCTCGATCGTGGCGATTTTGGCCTGTGCATTGGGATGCCAGACTCG
AGGGAATTCACTGGCGAGCTTTTCGACGCGCTTGCACGGAGGAAGCACCAAAACCTCCAGTGCATTAACAAAGAGGAGCTCTACGAGTTTTGGTTGCAGCTATCTGACCAAAGCTTCGAC
TCCAGGATCCAAATCTTTTTCGATATGTGTGACAAGGACGCAGATGGACGTATCACCGAGGAAGAAGTGAAAGAGCTCTGGCAGCTCGAGAGTTTGATGCTGGGACAATTCGCATCACTA
GCACAAGATGGTTATCTCAATTACAGCCAAACTTGGAGCCAGACTCTGGCATTTGAACAATCCGGGAAGATCATACTCTGTGCCAGGAAGATCAAATACTTCGTCATCGAGAACTGGCAG
CGTGTCTGGGTGGTGGGCTTGTGGATCTTTGCAATGTGTGGGCTTTTTCTCTGGAAGTTCTTCGCATACAAGCAAACCTCGGCTTTCAAGCTTCTCGGCTACTGCCTTTGCTCGGCCAAA
GGAGCCGCCGAGACACTCAAGCTCAACATGGCTTTGGTTCTCCTCCCGATAATTGCAGGAGCCATCGTTGCGGGGGTTGGAATCCACGCGACGGTTCATCTCGCGTGTGATTTTCCCAGG
ATCATTCGGGCGAGCGAGGAAGAGTTTATGATCTATCTCGGGCGAGGGTTCCACTACAAGCAGCCAACTTACGTGGGGATCTTGGTTTCTATAGAGGGTGTTACAGGGATTAGCATGGTG
ATTATGATGAGCATCGCGTTCGTGCTGGCAACGAGATGGTTTCGTAGGAATCTCGTGAGGCTCCCTTGGCCCTTGCACAGGTTGACGGGGTTTAACGCATTTTGGTACTCCCACCACCTT
TTCATGGTGGTTTACGTGCTTTTGCTGCTTCACTCCATCTTCTTATTTTTCACAAACGACTGGGTGGCGAAATCAACATGGATGTATCTCTCTGTGCCAGTGCTTCTTTACTCAGTGGAG
AGGATCCTCTCAGCATTTCGAGCTAGACATTTCACAGTACAAGTTGTCAAGGCTGCTATTCATCCTGGAAATGTTCTTGCCTTGAAGATGACAAAGCCACCTACGTTCAAGTATAAGAGT
GGCATGTATCTATTTATCAAATGTATATCCATCTCTCCTTTTGAATGGCATCCATTTTCTATTACCTCCGCTCCTAGTGACAGGCATTTAAGTGTGCATATACGAACTGTGGGGGACTGG
ACGGAGGAGCTTAGAAGAATCTTCTCCAAGGCACTTGGAGGTCTTGCAGAGAAAGAAAATGTTCTGGAGAGTGAGAGCAGCGACATTAGCATCATAAGACACAGATTCCCAAAGCTTCAA
ATCGATGGACCTTATGGAGCTCCAGCCCAGGATTATCAGAAATATGATGTTTTACTGCTCGTTGGAATTGGAATTGGAGCAACGCCTTTCATCAGCGTTCTCAAAGACATGCTAAACCAA
ATAAAACTGGCAGATCAACAACAGTTCTTGTCGATGAAGCAGATTCGAAGCCCCAGGAAACGAAATGAAAGAAAGCTGCAATGTCCCACGAATGCATATTTCTACTGGGTCACTCGAGAG
CAAGGCTCGTTCGAGTGGTTTAGAGGAGTGTTAAACGAAGTTGCCGAGATTGACAACAAGGCAGTGATCGAGATGCATAACTATCTCACCAGCGTTTATGAAGAAGGGGATGCTCGCTCA
GCTCTCATCACAATGATGCAAGCTTTTCATCATGCCAAGAATGGTGTTGACATTGTCTCAGGAACAAGAGTTAGAACTCACTTTGCTCGACCCAAATGGTATAAAGTATTTTCCAGGCTT
GCCAACATTCATACAAATTCAAGAATAGGTGTCTTCTATTGTGGACCTATGGTTTTAGCTAGGGAGCTTGATGCATTATCAAGTGAATTTAACCAAATATCCAACTCAAAATTTGAGTTT
CACAAAGAAAATTTTTAA

Retrieve as FASTA