View Redoxidase 8463

Entry information : MtPrx[P]105 ( Medtr5g074770.1[4.0] / Medtr5g082710.1[3.0])

Entry ID	8463
Creation	2011-08-10 (Qiang Li)
Last sequence changes	2016-04-06 (Catherine Mathe)
Sequence status	theoretical translation / pseudogene
Reviewer	Christophe Dunand
Last annotation changes	2016-04-06 (Christophe Dunand)

Peroxidase information: MtPrx[P]105 ( Medtr5g074770.1[4.0] / Medtr5g082710.1[3.0])

Name (synonym)

MtPrx[P]105 ( Medtr5g074770.1[4.0] / Medtr5g082710.1[3.0])

Class

Class III peroxidase [Orthogroup: N/D] N/D

Taxonomy

Eukaryota Viridiplantae Streptophyta Fabaceae Medicago

Organism

Medicago truncatula (barrel medic) [TaxId: 3880 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	MtPrx[P]105 start..stop	S start..stop
MtPrx01	186	7.47e-60	1..131	190..325
GmPrx62	150	1.16e-45	30..130	253..358
PvPrx10	145	5.41e-44	1..130	192..326
SroPrx02	137	2.16e-43	42..130	22..110

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	31771370..31771765	394
complement(join(31771370..31771765))

Literature and cross-references MtPrx[P]105 ( Medtr5g074770.1[4.0] / Medtr5g082710.1[3.0])

DNA ref.	Phytozome 12: chr5 (31771765..31771370)
Cluster/Prediction ref.	Phytozome Gene 12: 31087864

Protein sequence: MtPrx[P]105 ( Medtr5g074770.1[4.0] / Medtr5g082710.1[3.0])

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	130
PWM (Da):	14734.63
PI (pH):	10.42

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

KHLVAINSQK RS*FSPSFGD KWMIVAQVEL DSNNAASSRN VGDNNLTSLD FTPTRVENTY YRDLLYKRGV LHSDQQLFKG QGSESDKLVQ LYSKNPFAFA SDFKTSLIKM GNIKPLTGRQ
GKIQLNCRRV R*

Retrieve as FASTA

Remarks

Pseudogene. Incorrect prediction from Phytozome (Stop in frame and long 5' end is missing).

DNA ►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

AAGCATCTTG TTGCCATCAA TTCCCAAAAA AGATCTTAGT TCAGCCCATC CTTCGGTGAT AAGTGGATGA TAGTAGCTCA GGTTGAACTT GACAGTAATA ATGCGGCATC TTCTAGAAAT GTTGGAGACA ACAATTTAAC ATCACTTGAT TTCACTCCTA CAAGAGTTGA AAATACATAT TATAGAGATT TGCTATACAA AAGAGGTGTC CTTCATTCTG ATCAACAATT GTTTAAGGGA CAAGGTAGTG AAAGTGACAA ATTGGTGCAG CTATATAGTA AGAACCCTTT TGCTTTTGCT AGTGATTTTA AGACTTCTTT GATCAAGATG GGGAACATCA AGCCTCTTAC CGGGAGACAA
GGCAAGATTC AACTTAATTG TAGAAGGGTC AGATAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

Retrieve as FASTA