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Entry information : SbPrx69 (Sobic.003G437400.1 [2.1] / Sb03g046810 [1.4])
Entry ID 853
Creation 2007-09-11 (Christophe Dunand)
Last sequence changes 2011-01-24 (Toky Ramarohetra)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx69 (Sobic.003G437400.1 [2.1] / Sb03g046810 [1.4])
Name (synonym) SbPrx69 (Sobic.003G437400.1 [2.1] / Sb03g046810 [1.4])
Class Class III peroxidase    [Orthogroup: Prx005]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Callus
Cell culture
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx69
start..stop		 S start..stop
ZmPrx139 602 0 20..359 22..355
SiPrx07 571 0 30..359 30..354
PviPrx03 565 0 35..355 30..350
TaPrx77-1D 536 0 33..361 32..362
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '853' 'join(73840891..73841346,73841464..73842096)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 73840891..73841346 454 N° 2 73841464..73842096 631  
join(73840891..73841346,73841464..73842096)


exon

Literature and cross-references SbPrx69 (Sobic.003G437400.1 [2.1] / Sb03g046810 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
Protein ref. UniProtKB:   P84516
DNA ref. Phytozome 12:   chromosome_3 (73840891..73842096)
EST ref. GenBank:   CD226287 [5' end]  CD223442 [3' end]
Cluster/Prediction ref. UniGene:   Sbi.16937
Protein sequence: SbPrx69 (Sobic.003G437400.1 [2.1] / Sb03g046810 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   362 (335)
PWM (Da):   %s   38280.55 (35795.3) Transmb domain:   %s   i7-29o
PI (pH):   %s   8.15 (8.00) Peptide Signal:   %s   cut: 28 range:28-362
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSRAPTLAAAAAVAAVVLICSSSTATAADGNARQPPLAPGLSFDF
YKRSCPKAESIVRSFVQDAVRRDVGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGEQQAPPNLTLRPTAFKAI
NDIHDRLHKECGGTVVSCSDVLALAARDSVVVSGGPSYKVPLGRRDSASFATQQDVLSGLPPPTAAVPALLAVLSKINLDATDLVALSGGHTIGLGHCTSFEDRLFPRPDPTLNATFAGQ
LRRTCPAKGTDRRTPLDVRTPNAFDNKYYVNLVNREGLFTSDQDLFSNARTRALVDKFARSQRDFFDQFAFSVVKMGQIKVLTGTQGQIRTNCSARNAAGTTMLPWSVSVVEEAADESLG
VF*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 3, intron 2) and 40 ESTs. No overlap between 5' and 3' ends but ESTs compiled in the same Unigene!!
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCTCGTGCTCCTACGCTCGCTGCCGCTGCCGCGGTGGCGGCCGTCGTCCTCATCTGCTCCTCCTCAACGGCTACCGCGGCGGACGGCAACGCGAGGCAGCCGCCGCTGGCCCCGGGC
CTGTCCTTCGACTTCTACAAGCGCAGCTGCCCTAAGGCGGAGTCCATCGTGCGGAGCTTCGTGCAGGACGCCGTGCGCAGGGACGTCGGCCTCGCCGCCGGCCTCCTCCGCCTCCACTTC
CACGACTGCTTCGTGCAGGGCTGCGACGCCTCCGTGCTCCTCGACGGCTCCGCCACCGGGCCGGGAGAGCAGCAGGCGCCGCCCAACCTCACGCTGCGCCCCACCGCGTTCAAGGCCATC
AACGACATCCACGACCGCCTCCACAAGGAGTGCGGCGGCACCGTCGTCTCCTGCTCCGACGTCCTCGCGCTCGCCGCACGGGACTCCGTCGTCGTGTGGTACATACCATACGCATGCATG
CACAATTTTCTTCTTTTCGTTTCTTTTCTTTAACCTGTTGTTTGCTGCTCGCTCACACACCACCACATGCATGCCTCGATCCATTCCATATGCAGTCCGGCGGGCCGAGCTACAAGGTGC
CCCTGGGTCGTCGCGACAGCGCGAGCTTTGCGACGCAGCAGGACGTCCTGAGCGGGCTCCCGCCGCCGACGGCCGCGGTGCCGGCGCTCCTCGCCGTGCTGTCCAAGATCAACCTGGACG
CGACGGACCTGGTGGCGCTGTCAGGCGGGCACACCATCGGGCTGGGCCACTGCACGTCGTTCGAGGACCGCCTGTTCCCGCGCCCGGACCCGACGCTGAACGCCACCTTCGCCGGCCAGC
TCCGGCGGACATGCCCGGCGAAGGGCACCGACCGCCGGACGCCGCTGGACGTGCGCACGCCCAACGCGTTCGACAACAAGTACTACGTGAACCTGGTGAACCGTGAGGGGCTCTTCACCT
CGGACCAGGACCTCTTCAGCAACGCCCGCACCAGGGCCCTCGTCGACAAGTTCGCGCGCAGCCAGAGGGACTTCTTCGACCAGTTCGCCTTCTCCGTGGTGAAGATGGGGCAGATCAAGG
TGCTGACGGGCACGCAGGGGCAGATCCGCACCAACTGCTCCGCACGCAACGCCGCCGGGACGACGATGCTGCCGTGGTCCGTCTCCGTCGTCGAGGAGGCTGCAGATGAGAGCCTCGGCG
TGTTCTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCTCGTGCTCCTACGCTCGCTGCCGCTGCCGCGGTGGCGGCCGTCGTCCTCATCTGCTCCTCCTCAACGGCTACCGCGGCGGACGGCAACGCGAGGCAGCCGCCGCTGGCCCCGGGC
CTGTCCTTCGACTTCTACAAGCGCAGCTGCCCTAAGGCGGAGTCCATCGTGCGGAGCTTCGTGCAGGACGCCGTGCGCAGGGACGTCGGCCTCGCCGCCGGCCTCCTCCGCCTCCACTTC
CACGACTGCTTCGTGCAGGGCTGCGACGCCTCCGTGCTCCTCGACGGCTCCGCCACCGGGCCGGGAGAGCAGCAGGCGCCGCCCAACCTCACGCTGCGCCCCACCGCGTTCAAGGCCATC
AACGACATCCACGACCGCCTCCACAAGGAGTGCGGCGGCACCGTCGTCTCCTGCTCCGACGTCCTCGCGCTCGCCGCACGGGACTCCGTCGTCGTGTCCGGCGGGCCGAGCTACAAGGTG
CCCCTGGGTCGTCGCGACAGCGCGAGCTTTGCGACGCAGCAGGACGTCCTGAGCGGGCTCCCGCCGCCGACGGCCGCGGTGCCGGCGCTCCTCGCCGTGCTGTCCAAGATCAACCTGGAC
GCGACGGACCTGGTGGCGCTGTCAGGCGGGCACACCATCGGGCTGGGCCACTGCACGTCGTTCGAGGACCGCCTGTTCCCGCGCCCGGACCCGACGCTGAACGCCACCTTCGCCGGCCAG
CTCCGGCGGACATGCCCGGCGAAGGGCACCGACCGCCGGACGCCGCTGGACGTGCGCACGCCCAACGCGTTCGACAACAAGTACTACGTGAACCTGGTGAACCGTGAGGGGCTCTTCACC
TCGGACCAGGACCTCTTCAGCAACGCCCGCACCAGGGCCCTCGTCGACAAGTTCGCGCGCAGCCAGAGGGACTTCTTCGACCAGTTCGCCTTCTCCGTGGTGAAGATGGGGCAGATCAAG
GTGCTGACGGGCACGCAGGGGCAGATCCGCACCAACTGCTCCGCACGCAACGCCGCCGGGACGACGATGCTGCCGTGGTCCGTCTCCGTCGTCGAGGAGGCTGCAGATGAGAGCCTCGGC
GTGTTCTAG

Retrieve as FASTA