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Entry information : TvCIIBA
Entry ID 8530
Creation 2011-09-23 (Christophe Dunand)
Last sequence changes 2012-11-07 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-11-07 (Christophe Dunand)
Peroxidase information: TvCIIBA
Name TvCIIBA
Class Other class II peroxidase type A    [Orthogroup: CIIBA001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Coriolaceae Trametes
Organism Trametes versicolor (Coriolus versicolor )    [TaxId: 5325 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TvCIIBA
start..stop		 S start..stop
DsCIIBA06 514 0 1..359 1..356
ParcCIIBA02 474 4.63e-169 23..359 21..360
GsppCIIBA06 463 1.17e-164 18..359 19..355
ParcCIIBA04 460 2.36e-163 20..360 21..362
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 817339..817452 112 N° 2 817230..817279 48 N° 3 817148..817167 18 N° 4 817062..817087 24
N° 5 816960..817006 45 N° 6 816899..816912 12 N° 7 816721..816841 119 N° 8 816425..816656 230
N° 9 816300..816362 61 N° 10 816134..816240 105 N° 11 816042..816079 36 N° 12 815764..815979 214
N° 13 815667..815696 28  
complement(join(815667..815696,815764..815979,816042..816079,816134..816240,8163 00..816362,816425..816656,816721..816841,816899..816912,816960..817006,817062..8 17087,817148..817167,817230..817279,817339..817452))


exon

Literature and cross-references TvCIIBA
DNA ref. JGI genome:   scaffold_12 (817452..815612)
Protein sequence: TvCIIBA
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   359 (341)
PWM (Da):   %s   37045.85 (35038.7)  
PI (pH):   %s   3.98 (3.94) Peptide Signal:   %s   cut: 19 range:19-359
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MLSKVFFCIATLVLAVTAAPPTSKRATCINGQTASDSKCCVWYDVLDDIQGASGLFQGGQCGEEAHESLRLTFHDAIGISSTAGYVGGGGADGSIMAHSDVELAYAENIGVDDIVELQRP
IALRYNVSFGDFIQFAGAVGVSNCLGGPRLQFLAGRSNDSQASPDNLVPGPGDSVDTILARMSDAGFSADEVVALLSSHSVAAQDHLDTTIAGSPLDSTPSVFDAQFFVETLLNGTAFPG
NGSNPGEAESPLPGEFRILSDSLIARDSRTSCEWQSYVSDHGRMVTQFEAAMAKMALLGQDASTLVDCSDVIPTPQAAAASVATLPAGKTMDDVEASCAETPFPTLSAASGPETSVAPV*

Retrieve as FASTA  
Remarks Complete sequence from genomic (11 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTGTCCAAGGTTTTCTTCTGCATCGCGACTCTGGTTCTGGCCGTTACTGCTGCTCCGCCGACATCGAAGCGGGCGACATGCATTAACGGACAGACTGCCAGCGACTCTAAGGTGGGA
TATCCCCTACATATCCTTTATTTGGGCGTGTTCTGACTCGCATCTTTCCGCAGTGTGCTGCGTTTGGTACGACGTGTTGGATGACATCCAAGGTGCCAGCGGCCTGTGAGTATCTCGAGG
GTCTGGAAAGATAGCATGTGGTATATCTACTAACTGCGTGCTGACAGCTCTTCCAGGGTGGCCAGTGCGGTCAGTCGCGCCCGTCCTGGTATACCGGTAGATGCCTGAAGCTAATACATG
ACTTTACAGGGGGGAGGAAGCGCATGAATCCCTTCGGGTAAGTCCGCAGATTTACGGAGGGTTCAGCTGCAGTAACACTGTCTGCTTCACAGCTCTGACCTTCCACGATGCTATTGGGAT
CTCATCTACGGCCGGGTATGTGTACAACCCCTTTACCCATTCTCAGCTCACTCACCGTTCATTCACAGCGCGGCGGAGGAGCAGGTATAAGCGGCAACCTTGCCAGTCGATGTCACTCAC
CATACTAATGGCGGACCCTAGATATGGATCCATCATGGCCCACTCCGACGTCGAGCTTGCCTACGCCGAGAACATCGGAGTAGACGACATCGTCGAGCTGCAGCGGCCGATAGCACTCCG
CTACAACGTCTCCTTTGGGGACTTGTACGTCGTTTACGAGTCGCTATATGCGCGCATTTAACACCAGAAACTCACTAGTGCTCCACAGTATATCCAGTTCGCGGGCGCCGTCGGCGTCAG
CAACTGCCTCGGAGGCCCCCGCCTCCAGTTCCTTGCTGGCCGCTCGAACGACTCGCAGGCCTCGCCCGACAACCTGGTCCCCGGCCCCGGTGACTCTGTCGACACTATCTTGGCGCGCAT
GTCGGACGCGGGTTTCTCCGCGGACGAAGTCGTTGCTCTGCTCTCATCGCATAGCGTTGCTGCTCAAGACCATCTGGACACCGTACGTCTGTGTGAATCAGCGATGTTCCCCCACAAGCT
CATGCTGGAACTTGTACTTGGCAGACACTATCGCGGGATCGCCCTTGGACTCCACCCCATCGGTATTTGATGCGCAGTTCTTCGTTGAGGTGAGCACAGGCTACCACAACTAGTATGTGC
CGAATGCGTGGTTGACGCGATCCGTCAGACACCTTGCTGAACGGGACCGCCTTCCCCGGAAACGGCTCCAACCCCGGAGAGGCTGAGTCGCCCCTGCCTGGAGAGTTCCGCATTCTCTCA
GACTCTCTGATCGCGCGGTGCGCACGTCCACTAACTGACGGCCGAGACGAGACACTGACCAGATCCTCCAGGGGGACTCCCGTACGTCTTGCGAGTGGCAGTCTTACGTCTGTGCGTATT
TTGTACCGTTACTCTAATTTCGTGTCTGTGACTCATTGCACCTGCTCTGCTAGCCCCGACCACGGACGAATGGTCACCCAGTTCGAAGCTGCGATGGCCAAGATGGCGCTCCTCGGTCAA
GACGCCAGCACTCTCGTCGACTGCTCCGACGTAATCCCCACGCCTCAAGCGGCGGCGGCGAGCGTGGCGACGCTCCCCGCTGGCAAGACGATGGACGACGTTGAGGCCTCCTGCGCGGAG
ACGCCATTTCCTACGCTGAGTGCGGCTTCCGGTGTGTTTTCGATCTTTATATTCGAACAATTCAATGAACGACTTATATCGATATACGTTCGCTCCCAGGGGTCCTGAGACATCCGTTGC
TCCTGTGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTGTCCAAGGTTTTCTTCTGCATCGCGACTCTGGTTCTGGCCGTTACTGCTGCTCCGCCGACATCGAAGCGGGCGACATGCATTAACGGACAGACTGCCAGCGACTCTAAGTGCTGC
GTTTGGTACGACGTGTTGGATGACATCCAAGGTGCCAGCGGCCTCTTCCAGGGTGGCCAGTGCGGGGAGGAAGCGCATGAATCCCTTCGGCTGACCTTCCACGATGCTATTGGGATCTCA
TCTACGGCCGGGTATGTCGGCGGAGGAGCAGATGGATCCATCATGGCCCACTCCGACGTCGAGCTTGCCTACGCCGAGAACATCGGAGTAGACGACATCGTCGAGCTGCAGCGGCCGATA
GCACTCCGCTACAACGTCTCCTTTGGGGACTTTATCCAGTTCGCGGGCGCCGTCGGCGTCAGCAACTGCCTCGGAGGCCCCCGCCTCCAGTTCCTTGCTGGCCGCTCGAACGACTCGCAG
GCCTCGCCCGACAACCTGGTCCCCGGCCCCGGTGACTCTGTCGACACTATCTTGGCGCGCATGTCGGACGCGGGTTTCTCCGCGGACGAAGTCGTTGCTCTGCTCTCATCGCATAGCGTT
GCTGCTCAAGACCATCTGGACACCACTATCGCGGGATCGCCCTTGGACTCCACCCCATCGGTATTTGATGCGCAGTTCTTCGTTGAGACCTTGCTGAACGGGACCGCCTTCCCCGGAAAC
GGCTCCAACCCCGGAGAGGCTGAGTCGCCCCTGCCTGGAGAGTTCCGCATTCTCTCAGACTCTCTGATCGCGCGGGACTCCCGTACGTCTTGCGAGTGGCAGTCTTACGTCTCCGACCAC
GGACGAATGGTCACCCAGTTCGAAGCTGCGATGGCCAAGATGGCGCTCCTCGGTCAAGACGCCAGCACTCTCGTCGACTGCTCCGACGTAATCCCCACGCCTCAAGCGGCGGCGGCGAGC
GTGGCGACGCTCCCCGCTGGCAAGACGATGGACGACGTTGAGGCCTCCTGCGCGGAGACGCCATTTCCTACGCTGAGTGCGGCTTCCGGGTCCTGAGACATCCGTTGCTCCTGTGTAA

Retrieve as FASTA