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Entry information : RcoPrx08 (RcPOX4 / RcPrx4)
Entry ID 8553
Creation 2011-02-24 (Christophe Dunand)
Last sequence changes 2015-11-09 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2015-11-09 (Achraf Jemmat)
Peroxidase information: RcoPrx08 (RcPOX4 / RcPrx4)
Name (synonym) RcoPrx08 (RcPOX4 / RcPrx4)
Class Class III peroxidase    [Orthogroup: Prx008]
Taxonomy Eukaryota Viridiplantae Streptophyta Rubiaceae Rubia
Organism Rubia cordifolia    [TaxId: 339321 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RcoPrx08
start..stop		 S start..stop
VvPrx33 383 6.28e-134 22..327 32..331
OcPrx12 380 2.82e-133 5..327 10..321
PtPrx24 380 2.92e-133 5..327 6..322
OrPrx02 378 3.21e-132 22..327 28..325
Literature and cross-references RcoPrx08 (RcPOX4 / RcPrx4)
Literature Veremeichik,G.N., Shkryl,Y.N., Bulgakov,V.P., Avramenko,T.V. and Zhuravlev,Y.N. Molecular cloning and characterization of seven class III peroxidases induced by overexpression of the agrobacterial rolB gene in Rubia cordifolia transgenic callus cultures. Plant Cell Rep. 31 (6), 1009-1019 (2012)
mRNA ref. GenBank:   HM807271.1
Protein sequence: RcoPrx08 (RcPOX4 / RcPrx4)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   327 (303)
PWM (Da):   %s   35731.35 (33233.1) Transmb domain:   %s   i5-27o
PI (pH):   %s   10.21 (10.45) Peptide Signal:   %s   cut: 25 range:25-327
Sequence
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*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MASKTLMYAV SLLLLVSGAF VCEATLSPTF YDVICPKAAA AIRNIVRTAV SRERRMAASL VRLHFHDCFV QGCDGSVLLD ETATIRSEKF SFANNNSIRG FNVIDEAKRA VEKLCPQKFS  CADIIALAAR DATVAVGGPT WTVKLGRRDS TTANRALADR DIPNSFHDLP VLIARFAAKG LNTREMVALS GSHTLGQSRC ISFRARLYGG NGTNIDPNFA RMRRRGCPPA GGGGDFNLAP 
LDLVTPNSFD NNYFRNLQQR KGLLNSDQVL FNWSFGSDRQ HRYLTTSKGR RFLLQNLLQP MVKMGDISPL TGINGIIRAA WCCSALN 

Retrieve as FASTA  
Remarks Complete sequence.
CDS►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCATCTA AAACACTGAT GTATGCTGTT TCCCTTTTGT TATTAGTCTC GGGGGCCTTT GTCTGTGAAG CAACGTTATC ACCCACGTTT TATGATGTCA TCTGTCCTAA GGCCGCCGCG  GCCATTCGCA ACATCGTTAG GACAGCTGTG TCGCGTGAGC GAAGGATGGC AGCTTCCCTC GTTCGACTTC ATTTTCACGA TTGCTTTGTT CAGGGCTGTG ACGGGTCAGT GCTACTAGAT  GAAACGGCCA CGATTCGAAG CGAGAAGTTT TCATTCGCGA ATAACAATTC GATTAGAGGG TTCAATGTGA TAGATGAAGC GAAGCGCGCT GTTGAGAAGC TATGCCCTCA GAAATTTTCT  TGTGCGGATA TCATAGCACT TGCGGCTAGA GACGCTACTG TTGCTGTCGG TGGCCCAACA TGGACGGTAA AACTTGGAAG AAGGGACTCC ACCACTGCAA ACCGTGCCCT AGCCGACCGA  GATATTCCAA ATTCATTTCA CGATTTGCCA GTCCTTATTG CAAGGTTTGC TGCAAAAGGT TTGAACACCA GAGAGATGGT TGCATTATCA GGATCTCACA CACTAGGGCA ATCGCGGTGC  ATCAGTTTCC GAGCAAGATT ATATGGCGGC AATGGAACAA ATATTGACCC TAATTTTGCC AGAATGCGCA GACGCGGATG TCCACCAGCA GGCGGAGGCG GAGATTTCAA TTTGGCTCCA  CTTGATTTGG TTACACCAAA CTCGTTCGAC AACAACTACT TTAGAAATTT GCAGCAAAGG AAAGGTCTTC TGAATTCGGA CCAAGTTCTT TTCAACTGGA GCTTCGGGTC CGACAGACAA  CATCGTTACT TGACTACATC AAAAGGCCGA AGATTTTTGC TTCAGAATTT GCTGCAGCCA ATGGTTAAGA TGGGAGATAT CTCGCCACTG ACAGGAATAA ATGGGATAAT AAGGGCAGCT 
TGGTGCTGTT CTGCTTTAAA TTGA 

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TCGCGTGAAG ACGACTGAAT CAATGCCCCT CTTTTTCGGG CAAGCGGGTG TTTCAAGGCA GAGTGCGGGT GAACAAAGTC GGTTTTCATA TCAAATCATG GCATCTAAAA CACTGATGTA  TGCTGTTTCC CTTTTGTTAT TAGTCTCGGG GGCCTTTGTC TGTGAAGCAA CGTTATCACC CACGTTTTAT GATGTCATCT GTCCTAAGGC CGCCGCGGCC ATTCGCAACA TCGTTAGGAC  AGCTGTGTCG CGTGAGCGAA GGATGGCAGC TTCCCTCGTT CGACTTCATT TTCACGATTG CTTTGTTCAG GGCTGTGACG GGTCAGTGCT ACTAGATGAA ACGGCCACGA TTCGAAGCGA  GAAGTTTTCA TTCGCGAATA ACAATTCGAT TAGAGGGTTC AATGTGATAG ATGAAGCGAA GCGCGCTGTT GAGAAGCTAT GCCCTCAGAA ATTTTCTTGT GCGGATATCA TAGCACTTGC  GGCTAGAGAC GCTACTGTTG CTGTCGGTGG CCCAACATGG ACGGTAAAAC TTGGAAGAAG GGACTCCACC ACTGCAAACC GTGCCCTAGC CGACCGAGAT ATTCCAAATT CATTTCACGA  TTTGCCAGTC CTTATTGCAA GGTTTGCTGC AAAAGGTTTG AACACCAGAG AGATGGTTGC ATTATCAGGA TCTCACACAC TAGGGCAATC GCGGTGCATC AGTTTCCGAG CAAGATTATA  TGGCGGCAAT GGAACAAATA TTGACCCTAA TTTTGCCAGA ATGCGCAGAC GCGGATGTCC ACCAGCAGGC GGAGGCGGAG ATTTCAATTT GGCTCCACTT GATTTGGTTA CACCAAACTC  GTTCGACAAC AACTACTTTA GAAATTTGCA GCAAAGGAAA GGTCTTCTGA ATTCGGACCA AGTTCTTTTC AACTGGAGCT TCGGGTCCGA CAGACAACAT CGTTACTTGA CTACATCAAA  AGGCCGAAGA TTTTTGCTTC AGAATTTGCT GCAGCCAATG GTTAAGATGG GAGATATCTC GCCACTGACA GGAATAAATG GGATAATAAG GGCAGCTTGG TGCTGTTCTG CTTTAAATTG 
AGAATATAAA TTAAATTCAG CGGG 

Retrieve as FASTA