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Entry information : SbRboh (Sobic.001G303600.1[2.1] / Sb01g029540[1.4])
Entry ID 887
Creation 2008-10-24 (Christophe Dunand)
Last sequence changes 2008-10-24 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2014-08-05 (Christophe Dunand)
Peroxidase information: SbRboh (Sobic.001G303600.1[2.1] / Sb01g029540[1.4])
Name (synonym) SbRboh (Sobic.001G303600.1[2.1] / Sb01g029540[1.4])
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh004]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Callus
Cell culture
Embryos
Leaves
Roots
Inducer Oxidative stress
Repressor N/D
Best BLASTp hits
Perox score E-value SbRboh
start..stop		 S start..stop
ZmRboh01 1266 0 14..677 4..669
ToriRboh11 806 0 59..677 172..799
PnodRboh01 806 0 56..676 202..808
CescRboh01 798 0 47..677 233..877
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 51573275..51573403 127 N° 2 51574081..51574173 91 N° 3 51574254..51574364 109 N° 4 51574544..51574924 379
N° 5 51575048..51575434 385 N° 6 51575519..51575614 94 N° 7 51575716..51575831 114 N° 8 51575970..51576072 101
N° 9 51576213..51576380 166 N° 10 51576466..51576597 130 N° 11 51576688..51576816 127 N° 12 51576926..51577004 77
N° 13 51577337..51577446 108  
join(51573275..51573403,51574081..51574173,51574254..51574364,51574544..51574924 ,51575048..51575434,51575519..51575614,51575716..51575831,51575970..51576072,515 76213..51576380,51576466..51576597,51576688..51576816,51576926..51577004,5157733 7..51577446)


exon

Literature and cross-references SbRboh (Sobic.001G303600.1[2.1] / Sb01g029540[1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_1 (51573275..51577446)
Protein sequence: SbRboh (Sobic.001G303600.1[2.1] / Sb01g029540[1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   677
PWM (Da):   %s   76858.87 Transmb domain:   %s   o152-171i234-256o289-311i336-358o368-385i502-519o
PI (pH):   %s   9.8
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MDRGGEGVGVRGGRWVRLEPAVTDPKSPALMLRGTKIAAAVARYADQPEMFTQAYLCSCDRNSTSRITEKHIKQAIMFSASLNKLTLNQDEATEYTNLILEELQTGQGVIQMNVMRKGLS
RDLQPTCWAIPLPIKCSQQILTATIVFFQAQWRRIFVVFLWLMACAALFTWKFMQYRQRLAFEVMGYCLSTAKGAAETLKLNMAIVLLPVCRNTVTWLRRSRVINSAIPFNDNINFHKLV
AAGIVIGIILHGGIHLACDFPRIARAEKTFFGRTIASDFGYHQPSYLEIVASTEGITGIAMVVLMLIAFLLASSPWRRNPGTLPPLVRQFAGFNSFWYSHHVFIAVYVLLIVHSMFLFLA
KDVAEKTTWMYVAIPVVIYVGERFYRMVRSMVFDVKILNATTYPGKVLALKVTKPPGFQYRSGMYVFVQCPEVSKFEWHPFSLTSAPDDDHLSIHIRSLGDWSYQMYNVFQALLSSNSSL
PKILFDGPYGAASQDHSKYEIILLIGLGIGATPFISVLKDIANGLDKGHGSLNYHSDRLKKAYFYWVTREQGSFEWFRDIMKEVSVLDSKQGVIEMYNYLTSVYQEGDKRSMLISVIQAL
HFARHGIDIISKTPVRTHFSRPNWPRVLHGLARRHIGERIGVFYCGPDDLGRQLEKLCHKVNMRTFTRFVFHKEHF

Retrieve as FASTA  
Remarks Complete genomic (chromo 1, 11 introns). No EST. Predicted with softberry but shorter 5' than the other RboH.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATAGAGGCGGCGAGGGCGTAGGTGTCCGCGGTGGCCGGTGGGTGCGGCTAGAGCCTGCGGTCACCGACCCGAAATCCCCAGCCTTGATGTTGCGTGGGACCAAGATTGCTGCTGCC
GTCGCTAGGGGGTCAAGCACGGCGAGTCGCCGGCTTCTGCGGTTCTGCCCCCTCTCCCTAGTCCCTAGTCCCTGTCGCCGCGCCATCCCTCTCCTCGCCGTTGACGACGACGAGCGCCAC
TAGGGACTGACCTTTGATCGAGGAAGTGGCGGCTACTGCTGGGTCTAGCTGGGGCAGCGGACATCTCTCCGGCGGGGGTAGGTGGAGGCGTGGAGCAGGGGGCACGGGAAGAGAGTACGC
AGCCGCCTGTTTTTACTGGCGCCTTGTTTAGTTCACCCAAAAAGCAAAAAGTTTTTAAGATTCCCGTCACATCGAATCTTGCGGCACATGCATGAAGCATTAAATATAAATGAAAGCAAA
AACTAATTACACAGTTTACCTGGAAATCGCGAGACGAATCTTTTGATCCTAGTTAGTCCATAATTGGATAATATTTGTCACAAACAAACGAAAGTGCTATAGTACCGAAATCCGAAATCT
TTTCGGAACTAAACAAGGCCTGGATCTTCATTCAAACAATTTACTTGCTTCTGTAGGTGAGAGTGAATCTAACAGTTCATCCGTATATCCTCTCCCGGTCAATCTAAATATCAACTCCAG
TAGGTCGATCGGTCGATCTCCTAGTCATGGCATCAGAATAGCAATGGATAGGTATTCTTCCTGAACTGTGATCCCCAACTCTTTACAGTACGCTGATCAACCAGAAATGTTTACACAAGC
ATATCTTTGCAGCTGCGACAGAAACTCAACTAGCAGAATCACAGAAAAGCATATTAAGCAGAGGTAGAAGTCATCTATGATGAAAATTTACTTGTTATTGTTGTGAGCCTAACACGTCTC
CATATGTGCTTGTAATTTACCAGGCAATTATGTTCAGTGCCTCTCTGAACAAGCTCACATTAAACCAAGATGAGGCCACTGAATACACAAACTTGATCCTAGAAGAGCTCCAGACAGGCC
AAGGAGTCATTCAGAGGTGACTTCCTAGTAATTTAAAACAAACAGTTCTTCATGCATAACCATGTATAATTATGCTACTATCATCATTATGTCGGTACGGAACCCCATGTTAGTAAATAC
AATTGATGGCATATACAAAAGTTTGGAATTTGGTGATAGCAAATTAAGACGTGTGTCTTCAAATTCAATTTACAGATGAATGTCATGAGGAAGGGCCTGTCAAGGGATCTCCAACCAACT
TGCTGGGCAATACCATTGCCAATAAAATGCAGCCAACAGATACTAACTGCAACCATAGTCTTCTTCCAAGCTCAATGGAGGCGTATATTTGTGGTTTTCTTGTGGCTCATGGCATGTGCT
GCACTCTTCACATGGAAGTTCATGCAGTATAGACAGCGGTTGGCTTTTGAGGTAATGGGGTACTGCCTGTCGACGGCCAAGGGGGCCGCAGAGACACTCAAGCTCAACATGGCCATTGTG
CTCCTACCTGTTTGCCGCAACACAGTCACTTGGCTCAGGAGAAGCCGTGTTATCAACTCGGCCATCCCATTTAATGACAACATTAACTTCCACAAGAGGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTAATCCTTTTTCAACTGTGTTGTGTCATGCTTTACTGGTCTGATGATCTGAGTTTAACGCTCATCTTTTAATTTAGCTTGTTGCGGCGGGTATTG
TGATCGGTATAATCCTTCATGGAGGCATCCACCTGGCATGTGACTTCCCAAGGATTGCAAGAGCAGAAAAGACCTTCTTTGGACGTACAATTGCTTCTGACTTTGGGTACCACCAGCCAT
CCTACCTGGAGATAGTGGCATCAACCGAGGGGATAACTGGTATAGCAATGGTGGTCCTAATGTTGATCGCATTCTTGCTTGCTAGTAGTCCTTGGAGAAGGAATCCAGGAACGCTGCCGC
CTCTTGTCAGACAGTTTGCTGGGTTCAATTCCTTCTGGTACTCACACCATGTGTTCATTGCCGTCTATGTTCTCCTCATCGTGCATTCCATGTTCCTCTTCCTAGCAAAGGATGTCGCAG
AGAAGACGCGGTAATATAATACTGCTCATTAAATAAATAAATCAAGCTCAGTATGCTTATGCCCCTCTGATTGCCACAAAAATGCATGTATCAGACATGGATGTATGTCGCAATTCCTGT
GGTGATCTACGTTGGAGAACGATTCTACAGGATGGTCAGATCTATGGTGTTTGATGTCAAGATCCTCAATATGTGTGATAATCTGCAACAAATACTATTTTTTTCAATGAAAATATGAGC
TGTTATGTCAATTCAATCTTAGTTTTGTTTTTTCGTTTTCTGTTCCTTTACAGGCAACAACTTATCCAGGGAAGGTACTTGCCCTCAAGGTGACAAAGCCTCCAGGTTTTCAATATCGAA
GTGGAATGTATGTATTTGTCCAATGTCCAGAAGTATCAAAGTTTGAATGTGGTGAGAAGATAGATCGCTACTGATTATATAGTCACTGTGTGCTGCACCAATGTTTAGTTAATTTCCTGC
TGTCACTTGAATGAAATGCATCCTTCTTACCTCTACTAATTCTAGATTTACTTTATCAAACTGTCTCAGGCACCCATTTTCCCTTACATCTGCTCCAGATGATGATCACTTGAGCATCCA
CATAAGATCTCTTGGTGATTGGAGCTACCAAATGTATAATGTCTTCCAACAGAGGTAAAGCACCAGTTCTTTACCCACTCTTCAATGAAACAACTATTTTTTTTTCTCAGACACTCTTGA
AACAATAATTATTCATAATGCTATTATTTGCAAGTTTACAGTGATACTTAAAATATATGTTTTGAGGTTTGTAGGCACTGCTTTCCAGCAACTCCAGCCTGCCCAAAATATTATTTGATG
GTCCCTACGGTGCAGCATCACAGGATCACTCCAAATATGAAATTATCTTGTTAATTGGGCTTGGAATAGGAGCAACGCCTTTCATAAGTGTTCTTAAAGACATTGCCAATGGATTAGATA
AGAGGTAATGACTGCACCTGCATGGTATGTAATTTCATATACTTCTATCAGCTGAAGATTTATCATATTTATTATCTGAACTATCTCAGGGACATGGCAGCCTAAATTATCACTCCGACC
GACTGAAGAAGGCCTACTTTTATTGGGTGACAAGAGAGCAGGGATCCTTTGAGTGGTTCAGGGATATCATGAAAGAGGTTTCAGTTCTAGATAGCAAGCAGAGGTTCACTTTTATAACCA
CTTTAATTAAACAGCGACCATATCTTCTTCAGAAATAGTACTCCATGTGACCACATCACTCATGTGCTTGTAGGGTGTGATAGAAATGTATAACTATCTGACAAGTGTCTACCAAGAAGG
TGATAAGCGGTCGATGCTAATAAGTGTGATTCAAGCACTTCATTTTGCACGCCATGGCATTGATATCATCTCTAAAACTCCGCGGTAAGTGTATCTACTTTCCAAGGCAACTACGCATGA
CAAGTGTCATATATGCGCCTAATATCTTTGATTGTAGAATGTGGAACGTTAAACAGAGTTGTTCAATTTGTAGGTTCGTACGCACTTTTCGAGGCCAAACTGGCCTAGAGTGCTCCATGG
TCTTGCAAGAAGGCATATCGGGGAGAGGATAGAGGTAAGAGTACTGTCTTGTTCATGCCTAGAAACTAAGTATTTCCCTGCCTGAAAATGGAATGAAACTTAGAGATGAGGAAGGCAAAT
AAAGTGCATTCTTTATCTATTTAGTGACTTTGTTTGGCCGTAACGTTTCAAGTATAATTGCTAGTCCGTTACATGCCAATATTCTCATTCATCTTCATGTCCCAAGGAGCTGCAGAAATT
TGCTCCTACCCACTCAGCAATTTTCTTATTCTGTAATCTGTATTAGGGCAACCTAGCAAAAGAAGCTTATAAGAAGAAACATTTGCTTCTGTGTTCCTCCTAAATTGAGCTTGAATGCAT
TGACAGGGGTTTTCTACTGTGGTCCAGACGATTTGGGAAGACAACTGGAGAAGCTCTGCCACAAAGTGAATATGAGAACATTCACGAGATTTGTGTTCCACAAGGAACATTTCTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATAGAGGCGGCGAGGGCGTAGGTGTCCGCGGTGGCCGGTGGGTGCGGCTAGAGCCTGCGGTCACCGACCCGAAATCCCCAGCCTTGATGTTGCGTGGGACCAAGATTGCTGCTGCC
GTCGCTAGGTACGCTGATCAACCAGAAATGTTTACACAAGCATATCTTTGCAGCTGCGACAGAAACTCAACTAGCAGAATCACAGAAAAGCATATTAAGCAGGCAATTATGTTCAGTGCC
TCTCTGAACAAGCTCACATTAAACCAAGATGAGGCCACTGAATACACAAACTTGATCCTAGAAGAGCTCCAGACAGGCCAAGGAGTCATTCAGATGAATGTCATGAGGAAGGGCCTGTCA
AGGGATCTCCAACCAACTTGCTGGGCAATACCATTGCCAATAAAATGCAGCCAACAGATACTAACTGCAACCATAGTCTTCTTCCAAGCTCAATGGAGGCGTATATTTGTGGTTTTCTTG
TGGCTCATGGCATGTGCTGCACTCTTCACATGGAAGTTCATGCAGTATAGACAGCGGTTGGCTTTTGAGGTAATGGGGTACTGCCTGTCGACGGCCAAGGGGGCCGCAGAGACACTCAAG
CTCAACATGGCCATTGTGCTCCTACCTGTTTGCCGCAACACAGTCACTTGGCTCAGGAGAAGCCGTGTTATCAACTCGGCCATCCCATTTAATGACAACATTAACTTCCACAAGCTTGTT
GCGGCGGGTATTGTGATCGGTATAATCCTTCATGGAGGCATCCACCTGGCATGTGACTTCCCAAGGATTGCAAGAGCAGAAAAGACCTTCTTTGGACGTACAATTGCTTCTGACTTTGGG
TACCACCAGCCATCCTACCTGGAGATAGTGGCATCAACCGAGGGGATAACTGGTATAGCAATGGTGGTCCTAATGTTGATCGCATTCTTGCTTGCTAGTAGTCCTTGGAGAAGGAATCCA
GGAACGCTGCCGCCTCTTGTCAGACAGTTTGCTGGGTTCAATTCCTTCTGGTACTCACACCATGTGTTCATTGCCGTCTATGTTCTCCTCATCGTGCATTCCATGTTCCTCTTCCTAGCA
AAGGATGTCGCAGAGAAGACGACATGGATGTATGTCGCAATTCCTGTGGTGATCTACGTTGGAGAACGATTCTACAGGATGGTCAGATCTATGGTGTTTGATGTCAAGATCCTCAATGCA
ACAACTTATCCAGGGAAGGTACTTGCCCTCAAGGTGACAAAGCCTCCAGGTTTTCAATATCGAAGTGGAATGTATGTATTTGTCCAATGTCCAGAAGTATCAAAGTTTGAATGGCACCCA
TTTTCCCTTACATCTGCTCCAGATGATGATCACTTGAGCATCCACATAAGATCTCTTGGTGATTGGAGCTACCAAATGTATAATGTCTTCCAACAGGCACTGCTTTCCAGCAACTCCAGC
CTGCCCAAAATATTATTTGATGGTCCCTACGGTGCAGCATCACAGGATCACTCCAAATATGAAATTATCTTGTTAATTGGGCTTGGAATAGGAGCAACGCCTTTCATAAGTGTTCTTAAA
GACATTGCCAATGGATTAGATAAGGGACATGGCAGCCTAAATTATCACTCCGACCGACTGAAGAAGGCCTACTTTTATTGGGTGACAAGAGAGCAGGGATCCTTTGAGTGGTTCAGGGAT
ATCATGAAAGAGGTTTCAGTTCTAGATAGCAAGCAGGGTGTGATAGAAATGTATAACTATCTGACAAGTGTCTACCAAGAAGGTGATAAGCGGTCGATGCTAATAAGTGTGATTCAAGCA
CTTCATTTTGCACGCCATGGCATTGATATCATCTCTAAAACTCCGGTTCGTACGCACTTTTCGAGGCCAAACTGGCCTAGAGTGCTCCATGGTCTTGCAAGAAGGCATATCGGGGAGAGG
ATAGGGGTTTTCTACTGTGGTCCAGACGATTTGGGAAGACAACTGGAGAAGCTCTGCCACAAAGTGAATATGAGAACATTCACGAGATTTGTGTTCCACAAGGAACATTTCTAA

Retrieve as FASTA