View Redoxidase 8968

Entry information : GmPrx168 (Glyma08g17850.1)

Entry ID	8968
Creation	2011-07-04 (Qiang Li)
Last sequence changes	2011-12-14 (Qiang Li)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2011-11-28 (Qiang Li)

Peroxidase information: GmPrx168 (Glyma08g17850.1)

Name (synonym)

GmPrx168 (Glyma08g17850.1)

Class

Class III peroxidase [Orthogroup: Prx022]

Taxonomy

Eukaryota Viridiplantae Streptophyta Fabaceae Glycine

Organism

Glycine max (soybean) [TaxId: 3847 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	GmPrx168 start..stop	S start..stop
GmPrx270	679	0	1..383	1..384
MtPrx82	560	0	2..383	3..389
VvPrx90	464	1.33e-164	1..383	1..375
RcPrx72	458	2.48e-162	66..383	23..354

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	13311621..13311965	343	N° 2	13312492..13312689	196	N° 3	13313440..13313605	164	N° 4	13314055..13314230	174
N° 5	13314279..13314545	265
join(13311621..13311965,13312492..13312689,13313440..13313605,13314055..13314230 ,13314279..13314545)

Literature and cross-references GmPrx168 (Glyma08g17850.1)

DNA ref.	Phytozome 12: Gm08 (13311621..13314545)
EST ref.	GenBank: EV265428.1 [5' end]

Protein sequence: GmPrx168 (Glyma08g17850.1)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	383 (362)
PWM (Da):	42428.27 (40136.9)	Transmb domain:	i5-22o
PI (pH):	5.74 (5.45)	Peptide Signal:	cut: 22 range:22-383

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MRSCIINLWIVAALVVPVLLSLRSPRGETQTQTTSSFSDSSTFSL
KLANGFGFYAVSFPFNQRIRDGSNLEYDFYRDTCPQAEGVVRSALTRIYFDHRDVAPALLRLFFHDCFIEGCDASLLLDENNGDRNRSVEKQAVPNQTLRGFDKIELIKEEVEQACPGIVSCADILALAARDSILLAGGPFYPVLTGRRDSHQSFFEEATDQIPRPDDNVTRTLNLFNLRGFNARETVSL
LGGHNIGKIGCDFIQQRLYNFQGTGQPDPSIPLDFLRQMRLNCPDSKNSSTSIDEFTISALSSSVSSGASFDTHYYQSLLRGRGLLFADQQLMAEQKTARLVSAYASDDGSTFRMDFARV
MLKMSNLDVLTGLQGQVRVNCSLPVSS*

Retrieve as FASTA

Remarks

Complete sequence from genomic and 1 EST. Incorrect prediction from Phytozome (Both 5' end and 3' end are missing).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGCGAAGCTGCATCATCAACCTCTGGATCGTGGCGGCACTCGTCGTCCCCGTGCTCCTCTCTCTCAGAAGCCCTCGAGGCGAAACCCAAACCCAAACCACTTCTTCTTTCTCCGATTCT
TCTACCTTTTCTTTGAAGCTTGCAAATGGATTTGGCTTCTATGCTGTCTCTTTCCCTTTCAACCAAAGGATACGTGATGGGTCCAATCTCGAATACGATTTCTATAGGGACACGTGTCCC
CAAGCGGAGGGTGTTGTTCGTTCGGCGCTCACTCGCATATACTTCGACCACAGGGACGTTGCACCTGCTCTGCTTCGTCTCTTCTTCCACGATTGCTTCATCGAGAGGTCCTTCTTTTTT
TTTTGTGGGGTTGCTTTTTTTGTTTTTTTTTGTTTTTATAAAGTTTTGTGCTTTGTGTTGAAACCGAAATGGGGCGTCTTTTGTTTTTCCCTTTCTTGCGTCCAAGACCATGAATTTGGA
GTATTTGTTGTGTTTATTCAAATGTGTGTTTCTTGATTACTTGCTTTTTTTCCCTTAAGATTTTCTTGATTCCTTCTTCTGACTATGCTGTTTGTGCTTTGAATAATGAATAATGAATAT
CCTGAATATTGATCATGATCTTGTGCTATTATGTAGATCGTTGATTTTCACTTTTTCTTTATAGAGTTTAATTTTTATGTGTAGAAACCCTTATACCGTCAATTAATTAGAAATTACGAC
TGATATGAATTTTAAAGTAATTATTAAGAAGGTTAATAATCTTACGGTTCATGTTAATTTATGATTGAATTACATTTTAATTAAATTGTTTTTTATGCATGTAAACAATCTCTTAATATA
CTTTTTGTTGCATTTGGGGTGTTGCTGAATCAGGGGTGTGATGCTTCTTTGCTGTTGGATGAGAACAATGGTGATAGAAACCGTTCGGTGGAGAAGCAGGCTGTGCCAAATCAGACATTG
AGAGGTTTTGACAAAATTGAGCTGATAAAAGAAGAGGTGGAACAAGCATGTCCCGGGATTGTGTCTTGTGCTGACATACTTGCTCTTGCAGCAAGAGATTCCATTCTTCTGTGGTACATA
TTTCTTTGTTTCCAATTGACTTGGATTGGGACTATACTGTATCTTGAGTTTCAGTTTACGTTGATAGTTTAGGATTTGTTGTTCTGATTGTAGTAAGGATGGCAGATGGAGAGTTTGGGT
GTTAAATTGAAGATCTGAATTCTGATGCATTTTGACTTCAATTGCAAGTTTGGAACCTGTAAATGCTACATGGCTTGGTCCTGTTTCTCTGTCCTGAAACTTATTAGCCATCAAAATAAT
ATAACAAAAAGTAAAACAATAATGATGTTTTGATAATATTTCTGGACTGGTTTATTGCTTCATTTGTTTTTTTTTTAAAACTGAAATACCATCTTTTACTAGCCAAGTAGTGATGCCTAG
TTCATTTTCATGCTATCATTCTCACATGAATATTTCACGGGGAAAGCCAGTTAGAAACAAGTTTACTAAATCATTTGAATTCAACTTTGTTCTGATTCTCTTTCCAGCAACTGCTTGTTG
GTTTGTTGCAAGTTTGTCTTGACTCATTTGTTTCGTCTCTCTTTATGTTACTTTTGTCCTTGTTCAATCATGTGTCTATATATTATTCATGCATGTCCTTGATAAGATAAGCAAGTGCAT
AATTTTTCCTTGAACTTGACATATTGATATTATGATTTGAGGTAGCAAAGTTTTCAAGAATATCTACTTTTGCTGTTATATTACACTTCTTAGAAGTTCAGCATCATTGTACCTATGATA
TGTTTTGTGGATCTCCATGGCAGGCTGGTGGACCTTTCTATCCAGTTTTAACAGGAAGAAGGGATAGCCATCAATCATTTTTTGAGGAAGCAACTGATCAGATTCCCAGACCTGATGATA
ACGTTACACGCACACTAAATCTCTTCAATCTCAGAGGATTCAATGCAAGAGAAACAGTCAGCCTTCTTGTGGTACTTACTCTACATTTCTTGTATCAGTCTAAATATATGTAATTTTCGG
TCCCCATTCTTAATAAGTTGTAATCTAGTTCTCATCATTTTTTTTTGTTTCTTTCTTTATATAGTTTGGCAGTCTCACTATTAGTTTTTTGTTTATTTTGTCCACTAAGTGTGTGTCTTG
CTTGCATTTTGGTCACTCTAAATATTATTAGGATACCAAATGAAAACCTATGATTAGTAGGATCAAAAAGTAAGTAAAGCCAACACTTATTGTCATGTGATCCATAGANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTTCAGCGTCATCCATGAATAGAATCTG
ACTAACAAGGTGCATTGGTTTGTCTGTTGATGATGTGCAGGAGGACACAACATTGGCAAAATCGGCTGCGACTTCATTCAGCAAAGGCTGTACAACTTTCAAGGCACAGGACAACCAGAC
CCCAGCATCCCCCTCGATTTCCTTCGCCAGATGAGGCTAAACTGCCCAGACAGCAAGAACAGCAGCACCAGCATAGACGAGTTTACGATCTCAAAGAGCCAGTGAGCAGTGATTTCCACT
CCAAAATGGGGATGTCATACATGCAGGCACTGTCATCTTCAGTGTCATCAGGAGCATCATTTGACACTCACTACTACCAGAGCCTGCTAAGAGGAAGAGGGCTTCTTTTCGCGGATCAGC
AGCTGATGGCCGAGCAGAAAACCGCCAGATTGGTCTCTGCTTATGCTTCAGATGATGGATCAACCTTTCGAATGGACTTTGCTAGGGTCATGTTGAAAATGTCTAACCTTGATGTTCTAA
CTGGACTTCAAGGTCAGGTTCGAGTCAATTGCTCACTACCTGTGTCTTCTTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA