View Redoxidase 9007

Entry information : GmPrx270 (Glyma15g41280.1)

Entry ID	9007
Creation	2011-07-04 (Qiang Li)
Last sequence changes	2011-10-12 (Qiang Li)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2011-12-13 (Qiang Li)

Peroxidase information: GmPrx270 (Glyma15g41280.1)

Name (synonym)

GmPrx270 (Glyma15g41280.1)

Class

Class III peroxidase [Orthogroup: Prx022]

Taxonomy

Eukaryota Viridiplantae Streptophyta Fabaceae Glycine

Organism

Glycine max (soybean) [TaxId: 3847 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	GmPrx270 start..stop	S start..stop
GmPrx168	685	0	1..384	1..383
MtPrx82	579	0	5..384	7..389
PpePrx50	472	3.97e-168	61..380	8..343
VvPrx90	467	1.58e-165	13..384	13..375

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9007' 'complement(join(48406385..48406848,48407296..48407461,48408211..48408408,48408917..48409243))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	48408917..48409243	325	N° 2	48408211..48408408	196	N° 3	48407296..48407461	164	N° 4	48406385..48406848	462
complement(join(48406385..48406848,48407296..48407461,48408211..48408408,4840891 7..48409243))

Literature and cross-references GmPrx270 (Glyma15g41280.1)

DNA ref.	Phytozome 12: Gm15 (48409243..48406385)

Protein sequence: GmPrx270 (Glyma15g41280.1)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	384 (338)
PWM (Da):	42522.1 (35814.9)
PI (pH):	5.09 (7.62)	Peptide Signal:	cut: 25 range:25-362

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MRSCINLWIVAALVIPVLLTLRSPRGETQTQTQTTSSFSDSSTFS
VKLANSFPFNQRIRDGSNLEYDFYMDTCPQAEGVVRSALTRIYFDHRDVAPALLRLFFHDCFIEGCDASLLLDENNGDRNLSVEKQAVPNQTLRGFDKIDLIKEEVEQACPGVVSCADILALAARDSIVLAGGPFYPVLTGRRDSHQSFFEEATDQIPRPDDNVTRTLNLFNLRGFNARETVSL
LGGHNIGKIGCDFIQQRLYNFQGTGQPDPSIPLDFLRQMRLNCPDSKNSSTSVDEFTISKMGMSYMQALSSSVSSGASFDTHYYQSLLRGRGLLFADQQLMAEEKTARLVSAYASDDGST
FRMDFARVMLKMSNLDVLTGLQGQVRVNCSLPVSS

Retrieve as FASTA

Remarks

Complete sequence from genomic. Incorrect prediction from phytozome (5' end is missing, short PS at 3' end is missing). No EST.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGCGAAGCTGCATCAACCTCTGGATCGTGGCGGCACTCGTCATCCCCGTGCTCCTCACTCTCAGAAGCCCTCGAGGCGAAACCCAAACCCAAACCCAAACCACTTCTTCTTTCTCCGAT
TCTTCTACCTTCTCCGTGAAGCTTGCGAACTCATTTCCATTCAACCAAAGGATCCGAGATGGGTCGAATCTCGAATACGACTTCTACATGGATACGTGTCCCCAAGCGGAGGGTGTTGTT
CGTTCGGCGCTCACTCGCATCTACTTCGACCACAGGGACGTTGCACCTGCTCTTCTTCGTCTCTTCTTCCACGATTGCTTCATCGAGGTCCTTCTTTTTTCTTTTGTTGGGTTGCTTGTT
TTTTGATAAAATTTTGTGTTTTGTGTTGAAACAGAAAATGGGGTGTTTTTTGTTTTTCCGTTTCTTGGTCTCAAGACCGTGAATTTGGAGTCTTTGTTGTGTTTATTCAAATGGGTGTTT
CTTGATTACTTGGGTTTTTCTTTTGGTTTTTTTAGCTTTTCTTGATTCGTTATTCGTCTCTGCTTTTTGTACTTGGAATATGAATCATGAATATCCTAAATTTCGATCATGATCTTGTGC
TATTGTATAGATCGTTGATTTTCACTTTTTCTTTATAGAGAATTTTGATTTGTGTAAAAACCCTTATACTGTCAATTAGTTAGAAAATAATTTAGATAAGTAATTATTAAGAAGGTTAAT
AATCGTACCATACATGTTAATTTTTGATTGGATGACATTTTGATTAAACTGTTTTCTATGCATGTAAACGATCTCTTATTGACTTTATGTTGCATTTGGGGTGTTGATGAATCAGGGGGG
TGTGATGCTTCGTTGCTGTTGGATGAGAACAATGGTGATAGAAACCTTTCCGTGGAGAAGCAGGCCGTGCCGAATCAGACATTGAGAGGTTTTGACAAAATTGACTTGATCAAGGAAGAG
GTGGAGCAAGCATGTCCCGGGGTTGTGTCTTGTGCTGACATACTTGCTCTTGCAGCAAGAGATTCCATTGTTTTGGTACATATTTCTTTGTTTCCAATTAACTTGGGTCTATACCGTATC
TTGAGTTTCAGTTTATGTTGATAGTTTAGGATTTGTTATTCTGATTGTAGTATGATAGCAGATAGAGTTTTTGGATGTTAAATTGAAGATCTGAATTCTGATGCATTTTGACTTTAATTG
CAAGTTTGGAACACTTGTAATGCATTGCTTGGTCCTGCTTCTCTATCCTGAAACTTATTAGCCATCAAAATAATATACCAAAATGTAAAACAATAGTGATGTTTTCATAATATTTCTGGA
ATAGTTTATACTTAATTACTTTTGTTTTTCTTTTCTGAAATACCATCTTTTACTAGCCAGAGAGTGATGGTAAGTTGTTCCTTTTCATGATATCTTTCTCACCCGTTTGTTGTATTAGTA
AAGCCAGTTATAAACAAGTTTACTAAATTGTTTGAATTCAACTTTGTTTATATTCTCTTTCCTACAACTGCTTGTTGGTTTGTTGCAAGTTTGTCTTGACTTGTTTGCTTTCTCTCTCTT
AATGTCACTTTTGTGCTTGTTCAATCATGTGTCTAGATAGATATTATCCATGTCCTGGATAAGATAAGCAAGTGCATAATTTTTCCTTGAATTCAGGCATATTGATATTATGATTTGGGG
CAGCCAAGTCTTCAAGAATATTCACTTTTGCTGTATGTATATCACACTTCATAGAAGTTCAGCATCATTGTACTTATGATATTTTTTGTGGATCTCCATTGTAGGCGCTGGTGGACCTTT
CTATCCAGTTTTAACAGGCAGAAGGGATAGCCATCAATCATTTTTCGAGGAAGCAACTGATCAGATTCCCAGACCTGATGATAACGTTACACGCACACTTAATCTCTTCAATCTCAGAGG
ATTTAATGCAAGAGAAACAGTCAGCCTTCTTGGTACTCACTCAATACATTTCTTGTATCAGTCTAAATGTATTTTTTGTCCCTTTGTTTTTCATCTAGTTCCCCATTCTTAATAAGTTGT
AATCTAGTCCTCATCATTTTTTTGTTACTTCCTTTATATAGTCTCACAGTCTCACTATTATTTCTTTTGTTTATTTTGTCCACTAAGCGTTGGTTTTGCTTGCATTTTGGTCACTCCAAA
TATTATTAGGAGACCAAATGAAAATTTATTATCAGTAGGATAAAAAAGTAAGCAAAGCCTACAATTAATGTCATGTGATCCATAAAGTCTTTTGATCATTAACCGGCCAGATTGCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGGTTTTCAATGTCATCATCCATGAATAGAATCTGACTAATGGTGTGAAGG
AGAGGACACAACATTGGCAAAATCGGTTGTGACTTCATTCAGCAAAGGCTGTACAACTTTCAAGGCACAGGACAGCCAGACCCCAGCATCCCCCTTGATTTCCTTCGTCAGATGAGGCTA
AACTGCCCAGATAGCAAGAACAGCAGCACAAGTGTAGACGAGTTTACGATCTCCAAAATGGGGATGTCATACATGCAAGCACTCTCATCTTCAGTTTCATCAGGAGCATCATTTGACACT
CACTACTACCAGAGCCTGCTAAGAGGAAGAGGGCTTCTTTTCGCCGATCAGCAGCTGATGGCCGAGGAGAAAACCGCTAGATTGGTCTCTGCTTATGCTTCAGATGATGGATCAACCTTT
CGCATGGACTTTGCCAGGGTCATGTTGAAAATGTCTAACCTTGATGTTCTCACTGGACTTCAAGGCCAGGTTCGAGTCAATTGCTCACTACCTGTGTCTTCTTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA