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Entry information : SbRboh08 (Sobic.008G118700.1 [2.1] / Sb08g017240 [1.4])
Entry ID 922
Creation 2008-11-15 (Christophe Dunand)
Last sequence changes 2008-11-15 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-06 (Messaoudi)
Peroxidase information: SbRboh08 (Sobic.008G118700.1 [2.1] / Sb08g017240 [1.4])
Name (synonym) SbRboh08 (Sobic.008G118700.1 [2.1] / Sb08g017240 [1.4])
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh001]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type Cell culture
Inducer Phosphate starvation
Repressor N/D
Best BLASTp hits
Perox score E-value SbRboh08
start..stop		 S start..stop
ZmRboh10 1617 0 13..916 27..902
BdiRboh04 1402 0 21..916 7..855
TaRboh13-1D 1374 0 12..916 10..865
TaRboh13-1A 1372 0 12..916 10..877
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 45760014..45760596 581 N° 2 45760752..45760911 158 N° 3 45761022..45761070 47 N° 4 45761182..45761295 112
N° 5 45761390..45762214 823 N° 6 45762315..45762529 213 N° 7 45762647..45763451 803  
join(45760014..45760596,45760752..45760911,45761022..45761070,45761182..45761295 ,45761390..45762214,45762315..45762529,45762647..45763451)


exon

Literature and cross-references SbRboh08 (Sobic.008G118700.1 [2.1] / Sb08g017240 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_8 (45760014..45763451)
Cluster/Prediction ref. UniGene:   Sbi.2642
Protein sequence: SbRboh08 (Sobic.008G118700.1 [2.1] / Sb08g017240 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   916 (345)
PWM (Da):   %s   101552.82 (36110.8) Transmb domain:   %s   o364-386i497-519o547-569i735-752o
PI (pH):   %s   8.9 (4.13) Peptide Signal:   %s   cut: 21 range:21-365
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSSSSGQQHETGPPPPTAFKSASTDGKSGSRRSTRFKDEDEYVEV
TLDVRDDGGGDVAVRAIKDVVLAGGPGVLGDAQDATALLDPPPTGSAAAAASGGLSSKLRAARAHLGRIASVKRA
AVPLSALLRRDRDRDRDRSSRLDRSVVTGAASALRGLQFLN
QAAVTEGWTEVEKRFQRLAVDGFLLRSRFGQCIGMVGSEEFAAQIFDALARRRGITAMVLTKDQVREFWEQLSDPGFDAKLQTFFDMVDKNADGQITEEELKVLTLTASANKLSKILERVDEYTALIMEELDPDNLGYIELANLESLLLQPAPASTSTRLVTHSSNNISQLISQRLAPARDDSALRRAAMAFLYFMEDN
WKRVWVMSLWLAINAALFAWKFAAYRRHPTFDVMGYCVCVAKGGAETTKFNMALILLPVCRNTITWLRSRTRLGAAVPFNDNINFHKVVAGGVAVGVALHAVTHLTCDFPRLLHASAAAY
EPMKAYFGQRRIPDYWWFVRGVEGVTGVIMVVLMAVAYTLAHPWFRRGKLSEGNPLRRLSGFNMFWYSHHLFVIVYVAFVVHGVCLYINRTWYKQTTWMYLAIPILLYAGERLFRALRSH
GLTTVRIEKVALYPGNVIAIHMSKPHGFSYKSGQYIYVNCGEVSPFEWHPFTITSAPGDDYLSMHIRCRGDWTTSFRALFAQVCRPPAAGQSGLLRADFASSTAAASAGGGKLPKLLIDG
PYGAPAQDYRKYDVLLLIGLGIGATPLISIVKDVLNNISDDDEEQPSSSSSAAAEFMTRRVYFYWCTREEGSFEWFRGVMNEVAERDARGDVVELHNHCTSVYEEGDARSALLVMLQALH
HAKSGVDVVSGTRVRTHFARPNWRDVFKRVACNHQGQRVGVFYCGDQKVTPELRRLSQDFSHKTTTKFVFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 8, 7 introns) and 3 ESTs + CD226605.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCGTCATCGTCGGGCCAGCAGCACGAGACCGGACCGCCGCCGCCGACGGCGTTCAAGAGCGCGTCCACGGACGGCAAGAGCGGTAGCCGCCGGAGCACGCGGTTCAAGGACGAGGAC
GAGTACGTCGAGGTCACGCTCGACGTCCGCGACGACGGCGGCGGCGACGTCGCCGTCCGGGCCATCAAGGACGTCGTCCTTGCCGGCGGCCCCGGCGTCTTGGGCGACGCGCAGGACGCC
ACGGCGCTCCTGGACCCCCCACCCACCGGCTCTGCTGCTGCTGCTGCCTCGGGGGGCCTGTCGTCCAAGCTCAGGGCCGCGCGGGCGCACCTCGGTCGCATCGCCTCGGTCAAGCGCGCC
GCCGTGCCGCTCTCGGCGCTGCTCCGCCGCGACCGCGACCGGGACCGGGACCGCTCCAGCAGGCTCGACAGGAGCGTCGTCACGGGCGCCGCCAGCGCGCTCAGGGGCCTCCAGTTCCTC
AACCAGGCCGCCGTCACCGAGGGGTGGACCGAGGTGGAGAAGCGCTTCCAGCGCCTCGCCGTCGACGGTTTCCTCCTCCGCTCACGCTTCGGACAGTGCATTGTGGTCAGTCACTCTTGT
TTCTTGCGTTTCCCTCTCAACTGCTTTTTTCTCAACCATTTGGTTTTGCTGTATACTAGTACTACAAGGGAAAAAAGAACTCGGAACATGTCTGAAACTCTGAATTTCTGAATGAAATGT
TCATGTTGCACTGACTGCAGGCATGGTTGGATCCGAGGAGTTTGCCGCGCAGATCTTCGACGCACTTGCACGGCGAAGGGGCATCACAGCCATGGTGCTCACCAAGGATCAGGTCCGGGA
GTTCTGGGAGCAGCTCTCTGATCCTGGATTCGATGCCAAGCTTCAGACCTTCTTTGACATATGTATGTCATGGGTTTAATAATCCTGTGTGCTAGTAGCAAAGTGCATTCTGATACCACT
TTCAGAAAAGTCTGTTCATGTCTGAACTAGCTTGATTGTCAACTTGTTGCAGGGTTGACAAGAATGCTGATGGTCAGATCACTGAAGAGGAGCTCAAAGAGAGGTAATGAAACTAGTCCA
TGAAATAGATCAATTCAATGGTTACAAACATCGATTGTCTCACTAGTTGCTCAATTCAGCTAACAACAATCTGAACTTCTTGCACCATCATCAGGTCCTCACTTTGACCGCCTCTGCCAA
CAAGCTGTCCAAGATCCTGGAGCGCGTCGACGAGTACACCGCGCTGATCATGGAGGAGCTCGATCCCGACAACCTCGGCTACATCGAGAGGTTCACACTCTTGCTCAATTCTGCATCAGC
TTGACACTGTTCATCTTCTTCTCACATTAACATCTGAACACAAACAAACAAACAAACGAAACAGCTCGCGAACCTGGAGTCGCTGCTGCTGCAGCCGGCGCCGGCGTCGACGTCGACGAG
GCTGGTGACGCACAGCTCCAACAACATCAGCCAGCTGATCAGCCAGAGGCTGGCGCCGGCGCGCGACGACAGCGCGCTCCGCCGCGCCGCCATGGCATTCCTCTACTTCATGGAGGACAA
CTGGAAGCGCGTGTGGGTGATGTCGCTGTGGCTGGCCATCAACGCGGCGCTCTTCGCCTGGAAGTTCGCCGCGTACCGCCGCCACCCGACGTTCGACGTGATGGGCTACTGCGTCTGCGT
CGCCAAGGGCGGCGCCGAGACCACCAAGTTCAACATGGCGCTCATCCTGCTCCCCGTCTGCCGGAACACCATCACCTGGCTCCGGTCCCGGACAAGACTCGGCGCCGCCGTCCCGTTCAA
CGACAACATCAACTTCCACAAGGTGGTGGCCGGGGGCGTCGCCGTCGGCGTCGCGCTGCACGCTGTGACGCACCTCACGTGCGACTTCCCGAGGCTGCTGCACGCCAGCGCCGCCGCGTA
CGAGCCCATGAAGGCCTACTTCGGCCAGCGCCGGATCCCGGACTACTGGTGGTTCGTCAGGGGCGTCGAGGGCGTCACCGGCGTCATCATGGTCGTGCTCATGGCCGTCGCCTACACGCT
GGCGCACCCGTGGTTCCGCCGGGGAAAGCTCAGCGAGGGCAACCCGCTGCGCCGCCTCAGCGGCTTCAACATGTTCTGGTACTCGCACCACCTCTTCGTCATCGTCTACGTCGCCTTCGT
CGTCCATGGCGTCTGCCTCTACATCAACCGGACCTGGTACAAGCAGACGCGGTGAGGATTTGACTTCCATTCAGAATTTGAGATCGCCATATGTACGTTCATGTGTCTTGGTTCTGACAA
AAACCTGTCGCTTGAAATGATGCAAATCCAGACATGGATGTACCTCGCCATCCCCATCCTGCTCTACGCCGGCGAGCGGCTTTTCCGGGCGCTGAGGTCCCATGGCCTCACCACCGTGAG
GATCGAGAAGGTCGCCCTGTACCCCGGAAATGTCATCGCCATTCACATGAGCAAGCCGCACGGGTTCAGCTACAAGAGCGGGCAGTACATCTACGTCAACTGCGGCGAGGTCTCGCCGTT
CGAGTGTGGTAAGCCGCCGCCTCCGTCGTCATCAATTACATTGCCGGCGACCGGCGTCGGCGACCGAGATCGCGCGCCATGTATAGTTGCTTAATTCGTTCGTGGCTGCACTGCACACAC
TGCAGGCACCCGTTCACCATCACCTCGGCGCCCGGCGACGACTACCTGAGCATGCACATCCGGTGCCGCGGCGACTGGACGACCAGCTTCAGGGCGCTGTTCGCGCAGGTGTGCCGCCCG
CCCGCCGCCGGGCAGAGCGGCCTCCTGCGGGCCGACTTCGCGTCCTCCACGGCGGCGGCGTCCGCCGGCGGCGGGAAGCTCCCGAAGCTGCTGATCGACGGGCCCTACGGCGCGCCCGCG
CAGGACTACCGCAAGTACGACGTGCTCCTCCTGATCGGTCTCGGCATCGGCGCCACCCCGCTCATCAGCATCGTCAAGGACGTGCTCAACAACATCTCCGACGACGACGAAGAGCAGCCG
TCGTCATCATCGTCGGCGGCGGCGGAGTTCATGACGCGGCGGGTGTACTTCTACTGGTGCACGCGGGAGGAAGGGTCCTTCGAGTGGTTCCGCGGCGTGATGAACGAGGTGGCGGAGCGG
GACGCCCGCGGCGACGTGGTGGAGCTCCACAACCACTGCACCAGCGTGTACGAGGAAGGCGACGCGCGGTCGGCGCTGCTGGTGATGCTGCAGGCGCTGCACCACGCCAAGAGCGGCGTC
GACGTGGTGTCAGGGACGCGGGTGCGCACGCACTTCGCGCGGCCCAACTGGCGGGACGTCTTCAAGCGGGTGGCCTGCAACCACCAGGGCCAGCGCGTCGGCGTCTTCTACTGCGGCGAC
CAGAAGGTCACGCCGGAGCTCCGCCGGCTGTCGCAGGACTTCTCCCACAAGACCACCACCAAGTTCGTCTTCCACAAGGAGAACTTCTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCGTCATCGTCGGGCCAGCAGCACGAGACCGGACCGCCGCCGCCGACGGCGTTCAAGAGCGCGTCCACGGACGGCAAGAGCGGTAGCCGCCGGAGCACGCGGTTCAAGGACGAGGAC
GAGTACGTCGAGGTCACGCTCGACGTCCGCGACGACGGCGGCGGCGACGTCGCCGTCCGGGCCATCAAGGACGTCGTCCTTGCCGGCGGCCCCGGCGTCTTGGGCGACGCGCAGGACGCC
ACGGCGCTCCTGGACCCCCCACCCACCGGCTCTGCTGCTGCTGCTGCCTCGGGGGGCCTGTCGTCCAAGCTCAGGGCCGCGCGGGCGCACCTCGGTCGCATCGCCTCGGTCAAGCGCGCC
GCCGTGCCGCTCTCGGCGCTGCTCCGCCGCGACCGCGACCGGGACCGGGACCGCTCCAGCAGGCTCGACAGGAGCGTCGTCACGGGCGCCGCCAGCGCGCTCAGGGGCCTCCAGTTCCTC
AACCAGGCCGCCGTCACCGAGGGGTGGACCGAGGTGGAGAAGCGCTTCCAGCGCCTCGCCGTCGACGGTTTCCTCCTCCGCTCACGCTTCGGACAGTGCATTGGCATGGTTGGATCCGAG
GAGTTTGCCGCGCAGATCTTCGACGCACTTGCACGGCGAAGGGGCATCACAGCCATGGTGCTCACCAAGGATCAGGTCCGGGAGTTCTGGGAGCAGCTCTCTGATCCTGGATTCGATGCC
AAGCTTCAGACCTTCTTTGACATGGTTGACAAGAATGCTGATGGTCAGATCACTGAAGAGGAGCTCAAAGAGGTCCTCACTTTGACCGCCTCTGCCAACAAGCTGTCCAAGATCCTGGAG
CGCGTCGACGAGTACACCGCGCTGATCATGGAGGAGCTCGATCCCGACAACCTCGGCTACATCGAGCTCGCGAACCTGGAGTCGCTGCTGCTGCAGCCGGCGCCGGCGTCGACGTCGACG
AGGCTGGTGACGCACAGCTCCAACAACATCAGCCAGCTGATCAGCCAGAGGCTGGCGCCGGCGCGCGACGACAGCGCGCTCCGCCGCGCCGCCATGGCATTCCTCTACTTCATGGAGGAC
AACTGGAAGCGCGTGTGGGTGATGTCGCTGTGGCTGGCCATCAACGCGGCGCTCTTCGCCTGGAAGTTCGCCGCGTACCGCCGCCACCCGACGTTCGACGTGATGGGCTACTGCGTCTGC
GTCGCCAAGGGCGGCGCCGAGACCACCAAGTTCAACATGGCGCTCATCCTGCTCCCCGTCTGCCGGAACACCATCACCTGGCTCCGGTCCCGGACAAGACTCGGCGCCGCCGTCCCGTTC
AACGACAACATCAACTTCCACAAGGTGGTGGCCGGGGGCGTCGCCGTCGGCGTCGCGCTGCACGCTGTGACGCACCTCACGTGCGACTTCCCGAGGCTGCTGCACGCCAGCGCCGCCGCG
TACGAGCCCATGAAGGCCTACTTCGGCCAGCGCCGGATCCCGGACTACTGGTGGTTCGTCAGGGGCGTCGAGGGCGTCACCGGCGTCATCATGGTCGTGCTCATGGCCGTCGCCTACACG
CTGGCGCACCCGTGGTTCCGCCGGGGAAAGCTCAGCGAGGGCAACCCGCTGCGCCGCCTCAGCGGCTTCAACATGTTCTGGTACTCGCACCACCTCTTCGTCATCGTCTACGTCGCCTTC
GTCGTCCATGGCGTCTGCCTCTACATCAACCGGACCTGGTACAAGCAGACGACATGGATGTACCTCGCCATCCCCATCCTGCTCTACGCCGGCGAGCGGCTTTTCCGGGCGCTGAGGTCC
CATGGCCTCACCACCGTGAGGATCGAGAAGGTCGCCCTGTACCCCGGAAATGTCATCGCCATTCACATGAGCAAGCCGCACGGGTTCAGCTACAAGAGCGGGCAGTACATCTACGTCAAC
TGCGGCGAGGTCTCGCCGTTCGAGTGGCACCCGTTCACCATCACCTCGGCGCCCGGCGACGACTACCTGAGCATGCACATCCGGTGCCGCGGCGACTGGACGACCAGCTTCAGGGCGCTG
TTCGCGCAGGTGTGCCGCCCGCCCGCCGCCGGGCAGAGCGGCCTCCTGCGGGCCGACTTCGCGTCCTCCACGGCGGCGGCGTCCGCCGGCGGCGGGAAGCTCCCGAAGCTGCTGATCGAC
GGGCCCTACGGCGCGCCCGCGCAGGACTACCGCAAGTACGACGTGCTCCTCCTGATCGGTCTCGGCATCGGCGCCACCCCGCTCATCAGCATCGTCAAGGACGTGCTCAACAACATCTCC
GACGACGACGAAGAGCAGCCGTCGTCATCATCGTCGGCGGCGGCGGAGTTCATGACGCGGCGGGTGTACTTCTACTGGTGCACGCGGGAGGAAGGGTCCTTCGAGTGGTTCCGCGGCGTG
ATGAACGAGGTGGCGGAGCGGGACGCCCGCGGCGACGTGGTGGAGCTCCACAACCACTGCACCAGCGTGTACGAGGAAGGCGACGCGCGGTCGGCGCTGCTGGTGATGCTGCAGGCGCTG
CACCACGCCAAGAGCGGCGTCGACGTGGTGTCAGGGACGCGGGTGCGCACGCACTTCGCGCGGCCCAACTGGCGGGACGTCTTCAAGCGGGTGGCCTGCAACCACCAGGGCCAGCGCGTC
GGCGTCTTCTACTGCGGCGACCAGAAGGTCACGCCGGAGCTCCGCCGGCTGTCGCAGGACTTCTCCCACAAGACCACCACCAAGTTCGTCTTCCACAAGGAGAACTTCTGA

Retrieve as FASTA