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Entry information : SbKat02 (Sobic.001G517700.1 [2.1] / Sb01g048280 [1.4])
Entry ID 971
Creation 2008-10-23 (Christophe Dunand)
Last sequence changes 2011-01-18 (Toky Ramarohetra (Scipio))
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-06 (Messaoudi)
Peroxidase information: SbKat02 (Sobic.001G517700.1 [2.1] / Sb01g048280 [1.4])
Name (synonym) SbKat02 (Sobic.001G517700.1 [2.1] / Sb01g048280 [1.4])
Class Catalase    [Orthogroup: Kat001]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Roots
Seedlings
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbKat02
start..stop		 S start..stop
OsKat03 961 0 1..492 1..492
ZmKat2 954 0 1..492 1..493
GhKat02 912 0 1..492 1..492
ZaKat01 910 0 1..492 1..492
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 71302333..71302347 13 N° 2 71302440..71302536 95 N° 3 71303449..71304593 1143 N° 4 71304714..71304781 66
N° 5 71304877..71304970 92 N° 6 71305061..71305120 58  
join(71302333..71302347,71302440..71302536,71303449..71304593,71304714..71304781 ,71304877..71304970,71305061..71305120)


exon

Literature and cross-references SbKat02 (Sobic.001G517700.1 [2.1] / Sb01g048280 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_1 (71302333..71305120)
Cluster/Prediction ref. UniGene:   Sbi.17797
Protein sequence: SbKat02 (Sobic.001G517700.1 [2.1] / Sb01g048280 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   492 (238)
PWM (Da):   %s   56469.14 (25071.5)  
PI (pH):   %s   7.3 (5.05) Peptide Signal:   %s   cut: 0 range:Ymax-237
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MDPYKMDPYKHRPSSTFNAPYWTTNSGAPVWNNDNSLTVGARGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDITHLSCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVK
FYTREGNWDLVGNNFPVFFIRDGMKFPDMVHSLKPNPKTHIQENWRILDFFSHHPESLHMFTFLFDDVGIPADYRHMDGSGVHTYTLINRAGKATYVKFHWRPTCGVRSLLDDEAVAVGG
ANHSHATKDLTDAIAAGNFPEWTLYIQTMDPEHEDRFDFDPLDVTKTWPEDVFPLQPVGRMVLNRNIDNFFAENEQLAFCPGLIVPGIYYSDDKLLQTRIFSYSDTQRHRLGPNYLLLPA
NAPKCAHHNNHYDGFMNFMHRDEEVDYFPSRYDPAKNAPRYPIPAVHITGRRDTVIAKENNFKQPGERYRAMDPARQERFIKRWVDALSDPRLTHEIRSIWLSNWSADRSLGQKLASRLS
AKPSM*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, 5 introns) and 50 ESTs (unigene is a compile of kat01 and 02)
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCCGTACAAGAGGTACGCCGTGCTCCCCACAGTCCAGAGCCGCACCGCACCGGCTAGCTGCTTATGTTCTTCGTTCATGACTTGATGTGTTGCGTTGCGTGCAGCACCGGCCGTC
GAGCACCTTCAACGCCCCGTACTGGACCACCAACTCCGGCGCGCCCGTATGGAACAACGACAACTCCCTCACCGTCGGCGCACGAGAGGTAACTGCTGCTGCTGCTGTCTGTTCGTACCG
CCGGCTAGAGCTACCTAGCGATGCCGCCGTACGTCGCTCTAGCAGGGGTACCTGATGAGTGCTGCGCTAGTAGTGGAATTCAGGTAGCTAGTACAGTAATACGTTGCGGTTGGTTACGTA
CTTACATGGCGGTGATACTACTAAACGCCTTCGATCGAATAAACTGTGTAGGTAGCTAGCTACGTACGGGAAGTTTCGTTGTGAGTTTAGTAGGAGTCAGCTACGAGGAATGATCAGCAA
CATGACGAAGCTGCTGCAGAGAGCAGAGCACGTACGCACGGTACCACTAGAAGAATTTCGAAGTAACACCTTTAACTAATACTACAGTACTAGGAGTACTTCATTAATTGAACTCCAAGT
ATTATCTGGTTACTCCTATGATAATTGATAAGGACAGACAGTAAAAAAAATCTCAACTTAGCTCTATTATTACCCCTCGTAAATATAGATTAATGATGAAATTCACAAAATATATCTAAA
AAATAAAGTTCTCAGTCCACCCTACCTTATAAATTTATGTCTAAAATTAGAAAAAGAGCACTAAGAATTCCACTGGGCCAGCAGCGGTAGAGGGGGCAGCAGCCCCTCTAGCCCCACTGT
TGGCTTCGTCGCTGACTGTACCTCCAATTCTAGAGTTCAGGAAATCAGGAGTACTATGTCAGCTTAGTCCTGGTTTACTTTACCACTAGTACTTGTGATGTTTAGAATCAAATCATCAAG
CAGTCGGAAGTAGCGCACTCCTGAGTCCTGACCTCTCGTGGTCTCGTACGTGTAATTTGACGGTAATGGCAACTGAGCTGAGCTGAACAAGAACACAGTTGAAGAAGCGCTGTAGGATTA
ATTAGTTAATTAATCATTATATTTGTTCGTCATGGATCAGGTCCCATCCTGCTTGAGGACTACCACCTGGTGGAGAAGCTTGCCAACTTCGACCGTGAGCGGATCCCGGAGCGCGTGGTG
CACGCCCGTGGCGCCAGCGCCAAGGGCTTCTTCGAGGTGACCCACGACATCACCCACCTGTCGTGCGCCGACTTCCTGCGCGCCCCCGGCGTGCAGACCCCCGTGATCGTGCGCTTCTCC
ACGGTGATCCACGAGCGCGGGAGCCCCGAGACGCTGCGCGACCCGCGCGGGTTCGCCGTCAAGTTCTACACCCGGGAGGGCAACTGGGACCTGGTGGGCAACAACTTCCCCGTCTTCTTC
ATCCGCGACGGCATGAAGTTCCCGGACATGGTGCACTCGCTCAAACCAAACCCCAAGACGCACATCCAGGAGAACTGGCGCATCCTCGACTTCTTCTCCCACCACCCGGAGAGCCTCCAC
ATGTTCACCTTCCTCTTCGACGACGTCGGCATCCCCGCCGACTACCGCCACATGGACGGCTCCGGGGTGCACACCTACACGCTCATCAACCGCGCCGGCAAGGCCACCTACGTCAAGTTC
CACTGGCGCCCCACCTGCGGCGTCAGGTCGCTGCTGGACGACGAGGCCGTCGCCGTCGGCGGCGCCAACCACAGCCACGCCACCAAGGACCTCACCGACGCCATCGCGGCGGGGAACTTC
CCGGAGTGGACGCTCTACATCCAGACCATGGACCCTGAGCACGAGGACCGCTTCGACTTCGACCCGCTGGACGTGACCAAGACGTGGCCCGAGGACGTGTTCCCGCTGCAGCCCGTGGGG
CGGATGGTGCTCAACCGCAACATCGACAACTTCTTCGCCGAGAACGAGCAGCTGGCATTCTGCCCGGGACTCATCGTCCCTGGGATCTACTACTCCGACGACAAGCTGCTGCAGACCAGG
ATCTTCTCCTACTCCGACACGCAGCGCCACCGCCTGGGACCAAACTACCTGCTACTCCCGGCCAACGCGCCCAAGTGCGCACACCACAACAACCATTACGACGGCTTCATGAACTTCATG
CACCGCGACGAGGAGGTGGACTACTTCCCCTCCAGGTACGACCCTGCCAAGAACGCGCCGAGGTACCCAATCCCGGCCGTCCACATCACCGGCCGCCGAGACAAGAGGTACCCAATCCTC
AGTGATCATCATTTCATTTTTACTCTAATGTAGAATGTAGTAATGTCTACTCGATCCATCACTGACTGAGTCTGAATGATCGATCACCTGTTGGTTTGTTGGTGCAGACTGTGATTGCCA
AGGAGAACAACTTCAAGCAGCCTGGGGAGAGGTACCGCGCAATGGACCCAGCCAGAGGTATGGCATTCCATTCATCAAATGCTCTCTTACTGATCACTGAACTGCATGTTTGCTTACTGA
GCTGAACCGGACTGTGCTCATCATATCTGCAGGCAAGAGCGATTCATCAAGAGATGGGTCGATGCACTCTCTGACCCCCGACTCACCCATGAGATCAGGAGCATCTGGCTCTCCAACTGG
TCTCAGAGGTAATGTAACTGCAGCTTATTCAGACAATGAGTTGCTTGCTGAACTGAATGAGTTTTCTGAATCGCTGGTTGCCTGATCAATGGATGCAGGCCGACAGATCTCTGGGCCAGA
AGCTTGCGAGCCGCCTCAGCGCCAAGCCGAGCATGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCCGTACAAGCACCGGCCGTCGAGCACCTTCAACGCCCCGTACTGGACCACCAACTCCGGCGCGCCCGTATGGAACAACGACAACTCCCTCACCGTCGGCGCACGAGGTCCCATC
CTGCTTGAGGACTACCACCTGGTGGAGAAGCTTGCCAACTTCGACCGTGAGCGGATCCCGGAGCGCGTGGTGCACGCCCGTGGCGCCAGCGCCAAGGGCTTCTTCGAGGTGACCCACGAC
ATCACCCACCTGTCGTGCGCCGACTTCCTGCGCGCCCCCGGCGTGCAGACCCCCGTGATCGTGCGCTTCTCCACGGTGATCCACGAGCGCGGGAGCCCCGAGACGCTGCGCGACCCGCGC
GGGTTCGCCGTCAAGTTCTACACCCGGGAGGGCAACTGGGACCTGGTGGGCAACAACTTCCCCGTCTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTGCACTCGCTCAAACCA
AACCCCAAGACGCACATCCAGGAGAACTGGCGCATCCTCGACTTCTTCTCCCACCACCCGGAGAGCCTCCACATGTTCACCTTCCTCTTCGACGACGTCGGCATCCCCGCCGACTACCGC
CACATGGACGGCTCCGGGGTGCACACCTACACGCTCATCAACCGCGCCGGCAAGGCCACCTACGTCAAGTTCCACTGGCGCCCCACCTGCGGCGTCAGGTCGCTGCTGGACGACGAGGCC
GTCGCCGTCGGCGGCGCCAACCACAGCCACGCCACCAAGGACCTCACCGACGCCATCGCGGCGGGGAACTTCCCGGAGTGGACGCTCTACATCCAGACCATGGACCCTGAGCACGAGGAC
CGCTTCGACTTCGACCCGCTGGACGTGACCAAGACGTGGCCCGAGGACGTGTTCCCGCTGCAGCCCGTGGGGCGGATGGTGCTCAACCGCAACATCGACAACTTCTTCGCCGAGAACGAG
CAGCTGGCATTCTGCCCGGGACTCATCGTCCCTGGGATCTACTACTCCGACGACAAGCTGCTGCAGACCAGGATCTTCTCCTACTCCGACACGCAGCGCCACCGCCTGGGACCAAACTAC
CTGCTACTCCCGGCCAACGCGCCCAAGTGCGCACACCACAACAACCATTACGACGGCTTCATGAACTTCATGCACCGCGACGAGGAGGTGGACTACTTCCCCTCCAGGTACGACCCTGCC
AAGAACGCGCCGAGGTACCCAATCCCGGCCGTCCACATCACCGGCCGCCGAGACAAGACTGTGATTGCCAAGGAGAACAACTTCAAGCAGCCTGGGGAGAGGTACCGCGCAATGGACCCA
GCCAGGCAAGAGCGATTCATCAAGAGATGGGTCGATGCACTCTCTGACCCCCGACTCACCCATGAGATCAGGAGCATCTGGCTCTCCAACTGGTCTCAGGCCGACAGATCTCTGGGCCAG
AAGCTTGCGAGCCGCCTCAGCGCCAAGCCGAGCATGTAA

Retrieve as FASTA