Entry information : GmAPx[P]25
Entry ID 9859
Creation 2011-11-29 (Qiang Li)
Last sequence changes 2011-12-02 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-01-14 (Christophe Dunand)
Peroxidase information: GmAPx[P]25
Name GmAPx[P]25
Class Ascorbate peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmAPx[P]25
start..stop
S start..stop
GmAPx[P]23 77 7.92e-22 1..42 1..42
GmAPx[P]13 69 1.37e-18 1..41 29..69
GmAPx[P]11 69 6.21e-18 1..41 60..100
GmAPx[P]15 67 1.51e-17 1..41 41..81
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9859' 'complement(join(15641404..15641532))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 15641404..15641532 127  
complement(join(15641404..15641532))


exon

Literature and cross-references GmAPx[P]25
DNA ref. Phytozome 12:   Gm20 (15641532..15641404)
Protein sequence: GmAPx[P]25
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   42 (17)
PWM (Da):   %s   4391.27 (1708.9) Transmb domain:   %s   o4-26i
PI (pH):   %s   4.49 (9.70) Peptide Signal:   %s   cut: 26 range:26-42
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

DDFFVFGVCA LNVVFVLTQL ADVVAIEVTG GPKVSFHPGR EV 

Retrieve as FASTA  
Remarks Pseudogene from genomic (Only short PS). No prediction from phytozome.
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GATGATTTTT TTGTCTTTGG TGTTTGTGCG CTTAATGTTG TGTTTGTGTT GACGCAGTTG GCTGACGTTG TTGCCATTGA GGTCACGGGT GGACCTAAAG TTTCATTCCA TCCTGGAAGA 
GAGGTATAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GATGATTTTT TTGTCTTTGG TGTTTGTGCG CTTAATGTTG TGTTTGTGTT GACGCAGTTG GCTGACGTTG TTGCCATTGA GGTCACGGGT GGACCTAAAG TTTCATTCCA TCCTGGAAGA 
GAGGTATAA 

Retrieve as FASTA