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Entry information : LameAPx-CcP01
Entry ID 11734
Creation 2013-04-09 (Christophe Dunand)
Last sequence changes 2013-04-09 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2013-08-20 (Catherine Mathe (Scipio))
Peroxidase information: LameAPx-CcP01
Name LameAPx-CcP01
Class Hybrid Ascorbate-Cytochrome C peroxidase    [Orthogroup: APx-CcP001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Tricholomataceae Laccaria
Organism Laccaria amethystina    [TaxId: 89243 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LameAPx-CcP01
start..stop		 S start..stop
LbiAPx-CcP 1118 0 1..591 1..599
HsubAPx-CcP02 772 0 4..554 2..559
GmarAPx-CcP10 759 0 1..566 1..575
HcyAPx-CcP02 757 0 19..567 21..584
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '11734' 'join(476664..476876,476926..477012,477063..477129,477182..477503,477556..477669,477725..477899,477947..478354,478401..478796)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 476664..476876 211 N° 2 476926..477012 85 N° 3 477063..477129 65 N° 4 477182..477503 320
N° 5 477556..477669 112 N° 6 477725..477899 173 N° 7 477947..478354 406 N° 8 478401..478796 394
join(476664..476876,476926..477012,477063..477129,477182..477503,477556..477669, 477725..477899,477947..478354,478401..478796)


exon

Literature and cross-references LameAPx-CcP01
DNA ref. JGI genome:   scaffold_6 (476664..478796)
Cluster/Prediction ref. JGI gene:   672308
Protein sequence: LameAPx-CcP01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   593 (572)
PWM (Da):   %s   63733.33 (61371.1)  
PI (pH):   %s   4.97 (4.80) Peptide Signal:   %s   cut: 22 range:22-593
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MHHLPLALCLSLSVFTQLSSAYTWPSPQYDALEGLLYEGRKSDGSSLSSIVHPCRKRTGTLASIAAEWLRFAFHDMATHNVNDGTGGLDGSLVYELDRPENFGQGFNQTMTDFENYPNKL
VSRADIISIGAIFAVSTCGGPIIPFRGGRIDAYSAGNFGTPQPQDDLGSLTTSFQNQGFNAAEMIKLVACGHTMGGVRSSDFPELVPAGPNPNVPNIENFDTSTQFDNAVVTEYLSGSTK
NVLVVTSNATMASDLRVFQSDGNSTMRSLASASTFTSECQSILGRMLDTVPAGVTLTDEITLLPAKVNGVQLSIEKQKLVFKASLRLIQPINATANANRTVTMLWCDKYGSAKACKGATR
SSLPVNTVSDNPNISPVTMNLGYYFINYNFVVPIDSAASISNFWFQVDEHNGTAATTYNNGGSSYVLPQDQIFFVPMLSHVDNVPNATNTQAYTRIYNIVAAVRNDTTPSRVYVDGFDSS
VHGFPYSVNVTVDLALNSSLSSGVPEYSLYSGIVNDSGYQLTLDLHATSGGVTYTQDFMATTYLDNTPYVPPSTPSNAAVKSSGSRSSFAHVFGWTPVACSLSLTVALTLWIL*

Retrieve as FASTA  
Remarks Complete sequence from genomic (7 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCATCATCTGCCACTCGCTCTCTGTCTCTCTCTTTCTGTCTTTACTCAGTTATCTTCTGCTTACACATGGCCGTCACCACAATACGACGCCCTCGAAGGCCTGCTTTACGAGGGCAGG
AAAAGTGACGGTTCCAGCTTGTCTTCAATCGTCCATCCCTGCCGAAAACGTACAGGAACTCTTGCCTCAATTGCGGCGGAATGGCTGCGTTTCTCGTAAGTAGTCGCTCTCTGGCTTCAA
CGTCGTGCTAAGGGTTTGATCCAGGCTTTTCATGATATGGCAACACATAATGTTAATGACGGGACTGGTGGACTTGACGGTTCCCTCGTGTATGAACTTGACCGACCAGAGAGGTGTGTC
ATATACTTCATTTTATTTTCTCCTCGCTCTAAGGGTTTTGCAGAACTTTGGTCAGGGCTTCAATCAGACTATGACCGATTTTGAGAACTACCCGAACAAATTGGTTTCTCTCGTGCGTTG
CGTTTTCTTTTTGCCCACTGTTCTACCCTCATCTTCATTGACAGGTGCCGATATCATCTCGATTGGAGCCATCTTTGCGGTTTCGACGTGCGGCGGTCCCATTATTCCCTTCCGTGGTGG
CCGTATTGACGCCTACTCCGCGGGTAACTTTGGAACACCCCAGCCGCAGGATGACCTGGGGAGTCTCACCACCAGTTTCCAAAACCAAGGTTTCAATGCCGCAGAGATGATCAAACTCGT
TGCCTGTGGACATACCATGGGTGGTGTTCGGAGCTCCGATTTCCCTGAACTTGTCCCCGCTGGACCTAATCCGAATGTCCCGAACATCGAAAATTTCGATACCTCTACTCAATTTGACAA
CGCCGTGTGTAAGCGAAACTATACTCGTGGCTTTCTTCCCAACACTTAATCTTTATTAAGAGTGACTGAATACCTCTCTGGGTCTACTAAGAATGTTCTCGTGGTAACGTCCAATGCAAC
CATGGCCTCCGATCTGCGGGTATTTCAGAGTGATGGCAACAGCACCATGCGCAGAGGTATTGCTGGACTCATCACTTTCGAAGAAATTCCTTGACGCTGTTGCCAATCTAGTCTCGCTTC
AGCCTCTACCTTTACCTCTGAATGTCAATCCATTCTTGGACGCATGCTTGACACTGTTCCCGCAGGTGTCACTTTGACCGATGAAATTACCCTTTTGCCTGCCAAGGTTAATGGAGTGCA
ACTATCCATTGAGAAGCAGAAGCTTGTCTTCAAGGCATCCTTGCGCGCGTAAATACAACGTCCTCGTCTGATATCTCCTGCTAACTAAATCCAAGCTCATCCAACCAATCAATGCGACAG
CAAACGCCAACCGAACCGTGACAATGCTGTGGTGCGACAAGTACGGTAGTGCCAAAGCCTGTAAAGGAGCCACCAGGTCCTCTTTACCAGTCAACACGGTTAGCGACAACCCAAACATTT
CTCCAGTGACCATGAATCTTGGATACTACTTTATCAACTACAATTTCGTGGTCCCCATCGACTCCGCGGCTTCTATTTCAAATTTCTGGTTCCAGGTGGACGAACATAACGGAACGGCCG
CGACCACTTACAATAATGGTGGCAGTAGTTATGTGCTACCCCAGGATCAAATCTTCTTTGTCCCAATGCTGAGCCATGTCGATAATGTGCCGAACGCGACTAATACCCAGGCATATACCC
GGATATACAATATCGTCGCTGCCCCGTGCGTTGAGCTCATACATACATTAACGTCGCTAATATCCTTTTAGGTCCGCAACGACACAACTCCGTCTCGTGTTTACGTGGATGGATTTGACA
GTTCAGTCCACGGTTTCCCGTATTCTGTCAACGTCACTGTCGACCTTGCATTGAACTCGTCTTTGAGCTCGGGAGTTCCTGAGTATTCCCTGTACTCCGGGATCGTCAACGACTCTGGTT
ATCAGCTCACGCTGGACCTTCATGCCACCTCTGGAGGAGTCACGTATACGCAGGACTTCATGGCGACTACGTATTTAGACAACACTCCCTATGTTCCACCAAGTACCCCGAGTAACGCTG
CTGTGAAATCGTCAGGCAGCCGTAGCTCCTTTGCCCATGTTTTCGGATGGACCCCAGTCGCATGTTCTTTGAGCTTGACCGTGGCACTGACACTTTGGATCCTGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCATCATCTGCCACTCGCTCTCTGTCTCTCTCTTTCTGTCTTTACTCAGTTATCTTCTGCTTACACATGGCCGTCACCACAATACGACGCCCTCGAAGGCCTGCTTTACGAGGGCAGG
AAAAGTGACGGTTCCAGCTTGTCTTCAATCGTCCATCCCTGCCGAAAACGTACAGGAACTCTTGCCTCAATTGCGGCGGAATGGCTGCGTTTCGCTTTTCATGATATGGCAACACATAAT
GTTAATGACGGGACTGGTGGACTTGACGGTTCCCTCGTGTATGAACTTGACCGACCAGAGAACTTTGGTCAGGGCTTCAATCAGACTATGACCGATTTTGAGAACTACCCGAACAAATTG
GTTTCTCGTGCCGATATCATCTCGATTGGAGCCATCTTTGCGGTTTCGACGTGCGGCGGTCCCATTATTCCCTTCCGTGGTGGCCGTATTGACGCCTACTCCGCGGGTAACTTTGGAACA
CCCCAGCCGCAGGATGACCTGGGGAGTCTCACCACCAGTTTCCAAAACCAAGGTTTCAATGCCGCAGAGATGATCAAACTCGTTGCCTGTGGACATACCATGGGTGGTGTTCGGAGCTCC
GATTTCCCTGAACTTGTCCCCGCTGGACCTAATCCGAATGTCCCGAACATCGAAAATTTCGATACCTCTACTCAATTTGACAACGCCGTAGTGACTGAATACCTCTCTGGGTCTACTAAG
AATGTTCTCGTGGTAACGTCCAATGCAACCATGGCCTCCGATCTGCGGGTATTTCAGAGTGATGGCAACAGCACCATGCGCAGTCTCGCTTCAGCCTCTACCTTTACCTCTGAATGTCAA
TCCATTCTTGGACGCATGCTTGACACTGTTCCCGCAGGTGTCACTTTGACCGATGAAATTACCCTTTTGCCTGCCAAGGTTAATGGAGTGCAACTATCCATTGAGAAGCAGAAGCTTGTC
TTCAAGGCATCCTTGCGCCTCATCCAACCAATCAATGCGACAGCAAACGCCAACCGAACCGTGACAATGCTGTGGTGCGACAAGTACGGTAGTGCCAAAGCCTGTAAAGGAGCCACCAGG
TCCTCTTTACCAGTCAACACGGTTAGCGACAACCCAAACATTTCTCCAGTGACCATGAATCTTGGATACTACTTTATCAACTACAATTTCGTGGTCCCCATCGACTCCGCGGCTTCTATT
TCAAATTTCTGGTTCCAGGTGGACGAACATAACGGAACGGCCGCGACCACTTACAATAATGGTGGCAGTAGTTATGTGCTACCCCAGGATCAAATCTTCTTTGTCCCAATGCTGAGCCAT
GTCGATAATGTGCCGAACGCGACTAATACCCAGGCATATACCCGGATATACAATATCGTCGCTGCCGTCCGCAACGACACAACTCCGTCTCGTGTTTACGTGGATGGATTTGACAGTTCA
GTCCACGGTTTCCCGTATTCTGTCAACGTCACTGTCGACCTTGCATTGAACTCGTCTTTGAGCTCGGGAGTTCCTGAGTATTCCCTGTACTCCGGGATCGTCAACGACTCTGGTTATCAG
CTCACGCTGGACCTTCATGCCACCTCTGGAGGAGTCACGTATACGCAGGACTTCATGGCGACTACGTATTTAGACAACACTCCCTATGTTCCACCAAGTACCCCGAGTAACGCTGCTGTG
AAATCGTCAGGCAGCCGTAGCTCCTTTGCCCATGTTTTCGGATGGACCCCAGTCGCATGTTCTTTGAGCTTGACCGTGGCACTGACACTTTGGATCCTGTAA

Retrieve as FASTA