1. Browse the Database
  2. View Redoxidase
Entry information : GmarCIIBC03
Entry ID 11873
Creation 2013-05-23 (Nizar Fawal)
Last sequence changes 2016-02-01 (Christophe Dunand)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2017-04-27 (Catherine Mathe)
Peroxidase information: GmarCIIBC03
Name GmarCIIBC03
Class Other class II peroxidase type C    [Orthogroup: CIIBC002]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Cortinariaceae Galerina
Organism Galerina marginata    [TaxId: 109633 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmarCIIBC03
start..stop		 S start..stop
GmarCIIBC16 531 0 1..358 1..344
GmarCIIBC11 516 0 3..358 4..358
GmarCIIBC15 511 0 1..358 1..349
GmarCIIBC08 492 5.33e-176 1..359 1..349
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 469927..470059 131 N° 2 470120..470184 63 N° 3 470243..470301 57 N° 4 470443..470498 54
N° 5 470563..470575 11 N° 6 470630..470695 64 N° 7 470763..470884 120 N° 8 470952..471069 116
N° 9 471200..471235 34 N° 10 471352..471402 49 N° 11 471473..471552 78 N° 12 471606..471641 34
N° 13 471701..471795 93 N° 14 471870..471947 76 N° 15 472019..472099 79  
join(469927..470059,470120..470184,470243..470301,470443..470498,470563..470575, 470630..470695,470763..470884,470952..471069,471200..471235,471352..471402,47147 3..471552,471606..471641,471701..471795,471870..471947,472019..472099)


exon

Literature and cross-references GmarCIIBC03
DNA ref. JGI genome:   scaffold_38 (469927..472099)
Cluster/Prediction ref. JGI gene:   104378
Protein sequence: GmarCIIBC03
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   362 (340)
PWM (Da):   %s   37961.96 (35490.6) Transmb domain:   %s   o166-188i231-253o263-285i297-319o334-353i360-382o392-414i441-463o526-548i
PI (pH):   %s   4.4 (4.27) Peptide Signal:   %s   cut: 23 range:23-362
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAFKRIAVLMALAISQLQPGNAASIQKRSVTCPTGQTTANEACCVLFPVVDLLQKELFDNGQCDEEAHAALRLAFHDAIGFSNSGKGGGADGSILAFNSTETAYDANAGIDDIVALQWPL
FLKSNLTAGDFVHLAAAVGTANCPGTPQLPYSFGRPPPVAPAPDLTVPQPTDSVTTILARFAEAGFVAPEVIWLLASHSIAAAVRTSTSLPPGTAFDSCVIFSDTQFYLEVLLNGTQFPG
SGEKSGEVPSALAGEMRLASDFAFSQDSRTACFWQEAIDDQPFIMGKFEAAMAKLQVLGQSGFRLTDCSDVIPVPKAFSGPIRYPASFNQTNVQIACTSTPFPSLATVAGPAPTIPPVSV
TF*

Retrieve as FASTA  
Remarks Complete sequence from genomic (14 introns). Problem with an incorrect intron splice site
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTTCAAACGAATTGCCGTCCTGATGGCTCTCGCCATCTCTCAACTCCAACCTGGAAACGCCGCCTCCATCCAGAAGCGTTCTGTTACCTGTCCAACGGGACAGACAACCGCCAAC
GAGGCGTGCTGTGTGGTGCGCAATACATTACATGTCATAAATTCGGAGGAGCTACTAACGCCCGTTTCGATACAGTCCTCTTCCCTGTCGTTGACCTGCTTCAAAAGGAGCTTTTCGACA
ATGGACAATGTGATGAAGAGAGGTCAGCGCTAATTAAAAATGTTTTTGAATTTCAATATTCAGCATTGGTTTTTTTGCAGGCTCATGCAGCCCTCCGCCTCGCGTTCCATGATGCCATAG
GTTTTTCGAACAGCGGTAAAAGTCAATTTACAGATTCCCATGTTCTCAGACTCAAATAATACCCGTCCATCTCAGGTGGAAAGTCAGTATTTTGACACTTGTGACAAACGAACCCACTCT
GTCGAACACTCACTAATTTCGCGTTGTACTTACATTTACAAGGGGAGGAGGCGCTGACGGATCCATCCTCGCTTTCAATTCTACGGAAACTGCATACGCGGTGAGATAATAGGATCTTAT
ATCCACTTTATCCTAGAATTCAAACAATCACTCCGTTTCAATAGATGCCAATGCCGGGGGTGAATAGCTGCCTCTCTTCTTAAAAAAAACTATCTTAACCTTCCACCCAACAGTATCGAC
GACATCGTTGCTCTTCAATGGCCACTCTTCCTCAAAAGCAATCTAACTGCTGGAGACTTTTGTATGTATCAAAACTTTGTTATATATCAAAGATAGCCACGATTCATACTTGTATCTCCC
TTGCTCAGCGTCCATCTCGCAGCAGCCGTTGGGACCGCAAATTGTCCTGGTACACCTCAACTCCCGTATTCTTTCGGTCGCCCACCACCTGTCGCACCTGCCCCTGATCTTACCGTGCCT
CAACCGACTGTGGTGCGTTGTACCATGATCGCGAGTTATAAATAATCTTAACTTGGACCTGTTAAACCCCTGTGTCTAGATAGTGTCACCACCATCCTTGCGCGGTTCGCAGAAGCCGGA
TTCGTCGCTCCAGAAGTGATCTGGCTTCTTGCTTCGCACTCCATCGCCGCTGCGGTACGTACTTCTACGTCCCTTCCCCGTGATTTTGAGAGGTTTGGAATTCTAATTTCTGCATGGTCG
CTTCCAGAACAAAGTTGATCCAGTAAGTAAAATTTCAATGAGGTTGAGACCGTTGAGTCCTAAGCTAATGGTCATGAAATTCAGGCCAGGCCCGGAACCGCATTCGATTCGTGCGTGATT
TTCTCTCGTAGCGAATTAAACTGCATTTTGATCAGGACATCTAATACTCAGGACGCCTAATGTCTTGTAAGTTCACCTTCGCCTTGTTATTAACTTACAATTTTCGACCTAGCTCGTTTT
CAGTGACACTCAGTTTTACCTCGAAGTACTCCTGAACGGAACCCAATTCCCAGGGGGCAAGTGACAGTAATTACTTTTCGTGCAGAGATCAAGTGATCTAATCGCCCCTTTACTTAATCT
CAACAGAAGCGGCGAAAAATCTGGTGAAGTTCCGTCCGCACTCGCAGGAGAAATGCGCCTGGCGAGTGACTTCGCGTTTTCTCAAGAGGTTCGCGTTCCTCCTCTCTCCGTGTGCCCCTA
TATCCTAACTTATATGCCTAGATTCGCGGACTGCTTGTTTCTGGCAGGAGGCGATCGCGGAAAGTTGCTTCCTATTTTAACACTATACATCTCAACTTACTTTCAATGTCAATTTTAGAT
GACCAGCCGTTTATCATGGGCAAATTCGAAGCGGCAATGGCGAAACTTCAAGTTCTGGGTCAAAGTGGGTTCAGGTTGACAGATTGCTCCGATATGTTCGTATACTCTTTCTTCCAGAGC
CTCATCTAGTGAAAACTTCTTTCTTCTAACCTGATCGTGGCACCTTTAGGTCATCCCAGTTCCAAAGGCCTTCTCCGGTCCCATCCGCTATCCAGCCAGCTTCAACCAAACCAACGTTCA
GATCGCCCCGTATGTACATCCCTTGACACCCAATATTAAACAGGCTCAACTGAGTTTCCACTCATACTTGCTTACCATAGTGCACTTCAACTCCGTTCCCAAGCCTCGCAACAGTAGCTG
GTCCTGCTCCCACCATTCCTCCGGTGTCAGTCACATTTTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTTCAAACGAATTGCCGTCCTGATGGCTCTCGCCATCTCTCAACTCCAACCTGGAAACGCCGCCTCCATCCAGAAGCGTTCTGTTACCTGTCCAACGGGACAGACAACCGCCAAC
GAGGCGTGCTGTGTCCTCTTCCCTGTCGTTGACCTGCTTCAAAAGGAGCTTTTCGACAATGGACAATGTGATGAAGAGGCTCATGCAGCCCTCCGCCTCGCGTTCCATGATGCCATAGGT
TTTTCGAACAGCGGTAAGGGAGGAGGCGCTGACGGATCCATCCTCGCTTTCAATTCTACGGAAACTGCATACGATGCCAATGCCGGTATCGACGACATCGTTGCTCTTCAATGGCCACTC
TTCCTCAAAAGCAATCTAACTGCTGGAGACTTCGTCCATCTCGCAGCAGCCGTTGGGACCGCAAATTGTCCTGGTACACCTCAACTCCCGTATTCTTTCGGTCGCCCACCACCTGTCGCA
CCTGCCCCTGATCTTACCGTGCCTCAACCGACTGATAGTGTCACCACCATCCTTGCGCGGTTCGCAGAAGCCGGATTCGTCGCTCCAGAAGTGATCTGGCTTCTTGCTTCGCACTCCATC
GCCGCTGCGGTACGTACTTCTACGTCCCTTCCGCCCGGAACCGCATTCGATTCGTGCGTGATTTTCTCTGACACTCAGTTTTACCTCGAAGTACTCCTGAACGGAACCCAATTCCCAGGA
AGCGGCGAAAAATCTGGTGAAGTTCCGTCCGCACTCGCAGGAGAAATGCGCCTGGCGAGTGACTTCGCGTTTTCTCAAGATTCGCGGACTGCTTGTTTCTGGCAGGAGGCGATCGATGAC
CAGCCGTTTATCATGGGCAAATTCGAAGCGGCAATGGCGAAACTTCAAGTTCTGGGTCAAAGTGGGTTCAGGTTGACAGATTGCTCCGATGTCATCCCAGTTCCAAAGGCCTTCTCCGGT
CCCATCCGCTATCCAGCCAGCTTCAACCAAACCAACGTTCAGATCGCCTGCACTTCAACTCCGTTCCCAAGCCTCGCAACAGTAGCTGGTCCTGCTCCCACCATTCCTCCGGTGTCAGTC
ACATTTTAA

Retrieve as FASTA