View Redoxidase 12050

Entry information : LuGPx211(Lus10042418|PACid:23153616)

Entry ID	12050
Creation	2013-05-28 (Qiang Li)
Last sequence changes	2013-05-29 (Qiang Li)
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2013-05-30 (Qiang LI)

Peroxidase information: LuGPx211(Lus10042418|PACid:23153616)

Name

LuGPx211(Lus10042418|PACid:23153616)

Class

Plant glutathione peroxidase [Orthogroup: Gpx2001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Linaceae Linum

Organism

Linum usitatissimum (flax) [TaxId: 4006 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LuGPx211 start..stop	S start..stop
LuGPx140	374	2.25e-133	1..242	1..245
PtGPx01	360	6.83e-128	18..241	1..232
CsGPx01	358	4.7e-127	1..242	1..246
LuGPx19	358	1.33e-125	1..232	1..235

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '12050' 'join(2078742..2079011,2079283..2079359,2079430..2079491,2079561..2079679,2079774..2079941,2080099..2080128)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	2078742..2079011	268	N° 2	2079283..2079359	75	N° 3	2079430..2079491	60	N° 4	2079561..2079679	117
N° 5	2079774..2079941	166	N° 6	2080099..2080128	28
join(2078742..2079011,2079283..2079359,2079430..2079491,2079561..2079679,2079774 ..2079941,2080099..2080128)

Literature and cross-references LuGPx211(Lus10042418|PACid:23153616)

DNA ref.	Phytozome 12: scaffold123 (2078742..2080128)

Protein sequence: LuGPx211(Lus10042418|PACid:23153616)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	241
PWM (Da):	26221.48
PI (pH):	9.62

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MASSLPFATAFTSPLHNISEMARSCSPWQSLGVSSGSIRLSLLGSSRSGFLQQGFSLQSQNLAGFVAKSRSFGVFARASTEKSIHDFTVKDIDGTDVALSKFKGKVLLIVNVASRCGLTS
SNYSELSQIYDKYKTQGLEILAFPCNQFGGQEPGSNPEIKNFACSRFKAEFPIFDKVDVNGPNTAPVYQFLKSNGGGILGDLIKWNFEKFLVDKNGKVVQRYPPTTSPLQIEKDIQKLLA
A*

Retrieve as FASTA

Remarks

Complete sequence from genomic. Correct prediction.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTTCTTCTTTGCCGTTCGCTACAGCTTTCACTTCACCTTTGCACAACATTTCAGAAATGGCAAGGTCTTGTTCTCCATGGCAGTCGTTAGGTGTTTCTAGTGGATCAATTAGGTTA
TCTCTACTCGGGTCTTCTAGATCCGGGTTTCTGCAACAAGGGTTCTCGTTGCAGTCCCAGAATTTAGCTGGGTTTGTTGCAAAGTCTCGATCTTTTGGTGTTTTCGCCCGCGCCTCCACC
GAAAAATCCATTCATGACTTTACTGTCAAGAGGTACGTTTTAGGCAATGGATGAGGCACTGCTTCAGTGTGCGAACGCCTACCTTTTTGCAGTTCAATTGAGGGCTTCTGTGGGGTTTTC
TGTTGGTTTTAGAATGAACTTAGACTGGGTGAGTAAGTATGATCCCTGTTGCTGTTATTACTGTTCGAAAGGAAGATTCTTGAACTTATCCAAGCTGTGTAGTGATGTAAACGGGTAACT
CAGTTTCAGCTTATTTATGTATGCAACTGAAACTGATAAAGTGTTGCCATTTTGGTGTGCCAGGATATTGATGGTACCGATGTGGCTCTTAGCAAATTCAAGGGAAAAGTTCTTTTGATT
GTCAATGTAGCCTCCAGATGTGGTATTAATTTCCTGAGTAATCCATACTTTATCCAGCTAAGAATTATCATTTTATTATTGTTTGATTGCAGTGGTTTGACATCATCCAACTATTCAGAA
CTGTCCCAGATTTATGACAAGTACAAGACCCAGGGGGTAAGAAAACCCCCACATAAACAAACTCTTGTATTCAAAAAATTCATGCTCTGTACTGTTTCATTGCAGGACTTGAAATACTAG
CATTCCCTTGCAATCAGTTTGGAGGCCAAGAACCAGGATCGAATCCAGAGATCAAGAATTTCGCATGTAGCAGATTCAAAGCTGAATTTCCTATATTTGATAAGAGGTAATTAATCCACC
TGGGTTCTCATCCTTTTTCTGTGTTGCTATCATATCATGTCGCAAGCGGAGGATGAACATTTCAGAATTTGTGACTGTAGGTTGACGTGAATGGACCAAACACAGCCCCAGTTTACCAGT
TTTTGAAGTCCAACGGTGGTGGGATTTTAGGGGATTTGATCAAGTGGAATTTTGAGAAGTTCTTGGTGGACAAGAACGGTAAGGTTGTCCAACGGTATCCACCAACAACATCACCTCTCC
AAATTGAGAGGTATAGCTACGACTCAGTGGCAAATTGCTTAGTTCTTGGCGCATTTCAATATGATACTCTTTTCTTACTCATTTTATGGCTCTCAAAACTTGAAATCAGAATCAGTCAGC
TGGTTAAAAGATATGCCTTCCTGAAAGTTTGGATCTTTGTGTTGCAGAAGGATATTCAGAAACTGCTGGCGGCTTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA