View Redoxidase 12126

Entry information : LuGPx19 (Lus10003421|PACid:23164879)

Entry ID	12126
Creation	2013-05-28 (Qiang Li)
Last sequence changes	2013-05-29 (Qiang Li)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2015-02-09 (Christophe Dunand)

Peroxidase information: LuGPx19 (Lus10003421|PACid:23164879)

Name (synonym)

LuGPx19 (Lus10003421|PACid:23164879)

Class

Plant glutathione peroxidase [Orthogroup: Gpx2001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Linaceae Linum

Organism

Linum usitatissimum (flax) [TaxId: 4006 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LuGPx19 start..stop	S start..stop
LuGPx140	457	2.21e-164	1..235	1..235
LuGPx211	358	1.89e-125	1..235	1..232
PtGPx01	344	4.77e-120	37..235	27..223
CclGPx01	333	1.42e-115	1..235	1..236

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	25551..25829	277	N° 2	25225..25301	75	N° 3	25056..25117	60	N° 4	24504..24622	117
N° 5	24254..24421	166	N° 6	22855..23166	310
complement(join(22855..23166,24254..24421,24504..24622,25056..25117,25225..25301 ,25551..25829))

Literature and cross-references LuGPx19 (Lus10003421|PACid:23164879)

DNA ref.	Phytozome 12: scaffold543 (25829..22855)

Protein sequence: LuGPx19 (Lus10003421|PACid:23164879)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	338
PWM (Da):	37219.04	Transmb domain:	i5-27o
PI (pH):	9.38

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MASSLMFAATLSSPSHMYIAERPSCYSPSQQSFGVSVASARSSLLFPSSKSGFLRHGLSLKSQNSAGLVRKNPSFRVFARAATEKSIHDFTVKDIDGKNVSLSKFKGKALLIVNVASRCG
LTSSNYSELSHVYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDNVDVNGPSTAPVYQFLKSSAGGFLGDLIKWNFEKFLVDKNGKVVERYAPTTSPFQIEVWELW
KAGRATEVIDSSLSLDNSHEALRCIKIRLLCVEENAANRPDMQTVVLILNSETSSVPFPQKPAFVVSAISKVSPTIERTCSVNEMSFSGILRKRETLK*

Retrieve as FASTA

Remarks

Complete sequence from genomic. Correct prediction.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCGTCTTCTTTAATGTTCGCTGCAACTCTCTCCTCTCCTTCGCACATGTACATCGCAGAAAGGCCAAGTTGTTATTCACCCAGCCAGCAGTCGTTTGGCGTTTCCGTCGCATCAGCA
AGGTCGTCGCTGCTCTTCCCCTCTTCAAAATCGGGGTTTCTGCGACATGGGTTGTCTTTAAAATCCCAGAATTCAGCTGGGCTTGTTCGAAAGAATCCTTCTTTCCGCGTTTTTGCCAGA
GCTGCCACCGAGAAATCAATCCACGACTTCACTGTAAAGGTGCGGTTTTTTGAAGGCCTTGATTTCGAGTTTCTGTCTTTCCCTCTTTCATGTGTTCTACTGATGGGATCTACTATAAGC
TTCGTTTGGTAGGTGAATTTTTTTACTTTTTCCGCCCGGATGGGAAAGATAGATTTCAGAAGTGATTTTGGGAGCGGACTTTCCTGATGCTATATAACTTGAGAAGTATCTACCTGAATT
CATTGTAGCAGAAAAACCAATGACTGAAGGTTGCATTTCTGTGTGCAGGAGACATTGATGGTAAAAACGTGTCTCTTAGCAAATTCAAAGGCAAAGCTCTGTTGATTGTCAATGTTGCTT
CCAGATGGTACTCTCTCGCCAATCCATATACATAACTGATGATTCATATCCAGCATCCATCTTTAAGGATTGAGCTTTACCTTTTCAATCCATTTTGCTGTCTTTTGATTGCAGTGTGGT
TTGACATCTTCCAACTATTCAGAACTATCGCACGTTTATGAGAAGTACAAGACACAAGGTCAGTCAGATTCCTAGAGATTTCTAGATTTCTTGGCATCTATATTTACATGTTTCCTAAGA
AAGTATGAATGGAGGTTAGTTGAAGAATGTTGAGCTGAAGTTTAGAGAGGTTACGGAGGAAAGTCGAATAGAGTGATATGAGAGATTCCAAGTGGAATCGTGTTTCCCAAGCTACTTCAA
TGGAAATTAAAATTTCCTAGGAGTCCTTGATATTCCTTTATTCAACTTTCCTTCCACGAACGATTTCAACCTCAACTCAATTTTTTCAACTATTCTCAATTCAACTTTCATAGAAAACAT
GATTCTAGATACCAAACCTTATCTAAGTTCGCAGTCGGTATTCATCGTCAATAAGTTGTTATCATCCGTGAGTGTCAAGTTCGTGATGAATACAATTATGTAAATCATTCAGTTGGTTGG
TAATATTGCAGGAGATTTGAAATCCTAGCTTTCCCTTGCAATCAGTTTGGAGGGCAAGAGCCAGGATCGAACCCGGAGATCAAGCAGTTTGCTTGTACCAGATTCAAAGCTGAATTTCCT
ATATTTGACAACGTAGGTAGATAGGATGTGGCTTTCATGGTTGGATAGTATCAGTCTTTAAGGAGAATTCGAACAACTTGTGTGGTGACTGCAGGTGTTGACGTGAATGGGCCGAGCACA
GCACCAGTTTACCAGTTTCTGAAGTCGAGTGCTGGGGGATTTTTAGGTGATTTGATCAAGTGGAACTTTGAGAAGTTCTTGGTGGACAAGAATGGTAAAGTTGTGGAACGGTATGCCCCG
ACGACATCACCTTTCCAAATCGAGGTACATTTCTTTCCATCTTCCAGCCTTACGTTTAAGAGCTTCTTGCTTGACAATGCAAGAGATGAATGATGTTCTATCAGTTCATATTGCTCCAAT
GCCTTCTTTTCTTAAATCTGTGCCATCATTAGTCTCGGGTGTCCATTAAATTGGCCTCTTTTACTTGTTTGCAGAAGGATATTCAGAAGCTGCTTGCCGCATAAAATCACATCAGATGTC
CCAAGTCACAACTTAATTATACGTGTTTGTAAATTAATTTGTCCTAGACTGATTGGTTGTTGCAAGTAGTATGCATTTATCCGTTATGTGGTTGCTATTACTGAAGGGCGTGGTAGAAGT
ATGGTTATAAGGGTAGTGGTAAGAAGTTTTATGTCATGGAATGAACCAGGTATCAACCAAATATCAATATCCTTCGAAATTCACCCCGAGTACGTACAAACTCAAAGCCCCTATCTATTA
TTTGAAATAATCTGGAGGGGAAGGCTCACACCAATAAGATCATAGTGAAGCTAGCTTTCAAGAGTAACATCATGAATGGAAATAAAATGAGTGTCAAGATCCTAAAGATACATACTGGCC
AAATGATACGCAACATGTACATTTGCTCGATACAAAATATCCCAATCCAATCGTGCTTCCCAAGCTACTTCAAGTGGAATCGTGTTTTCAAAGAAGGTTTTACAGTCACAAAATTTCCGA
TTTTGGGATGTCTATAGTATTGGACGGTGATCAAGTTGAGGGGAAGACGATTAGGATTGGTGGAACATAGTAAGTTGTACCCCTTTTAGATAAGCTAGAACAATGTTGTATTATTTCAAC
TTATAATTCTTCTCTCCATTGTTTCTTTGTTGCCACGGATACATGTCATCAGAATATGCAATCTTCGGAAGGTTTTCAGTGAAGTCGGATGTCTTCAGCTTCGGGGTGATCCTGCTAGGA
ACGGTAATAGGAAAGAAGATCAATGGGTTCTCCCATGAAGATCCTTCTTCGAACTTGATTAGCCATGTAAGTTGGATTATAACAACAACTAACCACCTAAGCTGCTTCCTTCCTACTGTT
ACGGTAAAAATTGTGGCAAGTTTTACCACAGGTGTGTGGGAGCTATGGAAGGCAGGCAGAGCCACAGAGGTGATCGATTCTTCGCTGTCACTTGACAACTCGCATGAGGCGCTGAGATGT
ATTAAAATCAGACTGTTGTGCGTGGAAGAGAATGCAGCAAACCGGCCCGATATGCAGACCGTGGTTCTCATATTAAACAGTGAAACATCATCTGTCCCATTTCCTCAAAAACCTGCATTT
GTTGTTTCCGCGATATCCAAGGTATCGCCTACAATAGAACGAACATGCTCTGTAAATGAGATGTCATTTTCAGGGATCCTTAGAAAGAGAGAAACTTTGAAGTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA