View Redoxidase 12054

Entry information : LuGPx46(Lus10008499|PACid:23177406)

Entry ID	12054
Creation	2013-05-28 (Qiang Li)
Last sequence changes	2013-05-29 (Qiang Li)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2013-05-30 (Qiang LI)

Peroxidase information: LuGPx46(Lus10008499|PACid:23177406)

Name

LuGPx46(Lus10008499|PACid:23177406)

Class

Plant glutathione peroxidase [Orthogroup: Gpx2001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Linaceae Linum

Organism

Linum usitatissimum (flax) [TaxId: 4006 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LuGPx46 start..stop	S start..stop
LuGPx220	454	6.19e-165	1..236	1..238
PtGPx06-2	324	1.17e-113	1..236	1..238
LuGPx40	320	3.18e-113	68..236	1..169
ThasGPx06-2	315	6.27e-110	42..235	51..239

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '12054' 'complement(join(125987..126019,126107..126274,126493..126611,126884..126945,127018..127094,127174..127425))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	127174..127425	250	N° 2	127018..127094	75	N° 3	126884..126945	60	N° 4	126493..126611	117
N° 5	126107..126274	166	N° 6	125987..126019	31
complement(join(125987..126019,126107..126274,126493..126611,126884..126945,1270 18..127094,127174..127425))

Literature and cross-references LuGPx46(Lus10008499|PACid:23177406)

DNA ref.	Phytozome 12: scaffold835 (127425..125987)

Protein sequence: LuGPx46(Lus10008499|PACid:23177406)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	236 (302)
PWM (Da):	26120.43 (34461.5)
PI (pH):	9.72 (8.38)	Peptide Signal:	cut: 22 range:22-323

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MLCSSIRNLSRKNLIFTASSASSLLRTGPLRSISSLGLYYSRLPRRRSVSLKQCPGLVACSARFDRAMASNSEAPQSIYDFTVKDARGNDVDLSTYKGKVLLIVNVASQCGLTNSNYTEL
TELYKKYKDQGLEILAFPCNQFGSQEPGSNEQIMEFACTRFKAEYPIFDKVDVNGNNAAPIYKFLKSSKGGLFGDGIKWNFAKFLINKEGQVVDRYAPTTSPLSFEKDVKKLLGVA*

Retrieve as FASTA

Remarks

Complete sequence from genomic. Correct prediction.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGCTCTGTTCTTCAATCCGCAATCTCTCCCGTAAAAATCTCATCTTTACAGCCTCATCCGCTTCTTCTCTTCTTCGCACCGGACCTCTCCGATCGATTTCTTCTCTGGGTTTGTACTAT
TCTCGTCTTCCGCGTCGGCGATCAGTTTCCTTGAAGCAGTGCCCCGGTTTGGTTGCTTGTTCTGCCAGATTCGATCGAGCTATGGCCAGCAACTCCGAAGCTCCTCAGTCCATTTACGAC
TTCACTGTCAAGGTATAAATAAAGTTGGGGGTTTCCTTGTATTGGATTGAAATTATTGGTTGGCTGAATTTTGGATTCTGGTTGTTTGCAGGAGACGCTAGAGGGAATGATGTTGATCTC
AGTACTTACAAGGGCAAAGTTCTTTTGATTGTCAATGTCGCCTCCCAATGGTAAATTTCCCAACTTTATTTCACTAAGGGGTTAGTTATGTATCGAACATGAAAATTTACTGTTTGTTGC
AGTGTGGCTTGACCAATTCGAATTACACTGAGCTGACTGAGCTGTACAAGAAGTACAAAGATCAAGGTTTTCCTCTTCGCCCAGTTTCTTTGTGTTTGATTGTGATTAGTGACATAAGAG
AATATTCAATCCTTGGCTTGTGTGCATAAATGTTGTGGCTAATGGTCTTCTGAAGCAGATTATTGAGCTTATTCATTACAAGTACTGTATTCATTCTTGGCCTTCAAGTAGAAGTGTAGT
GGGAAATTATCTGTAATCTATTTGATCTCAGTCTAAGCTCAGTGGTCTACGTTTGTGATGACTAGTAACTCATTTTCCCCACTCGTTGCCTGGAGCAGGTGTCTAGAGATCTTGGCTTTC
CCTTGCAATCAGTTTGGATCTCAGGAGCCTGGCAGCAACGAGCAAATCATGGAGTTTGCTTGTACTCGCTTCAAGGCCGAGTATCCCATTTTCGACAAGGTGAGGTTCGGAGGTCAACTA
TACAATTAAACATGATCTAGACTAGAGACTCTACAAACCAATTCTTTTAGTTGTGGTGTTATGAATTACTCAAGACATCAATTAACCTTATGAATACCGATATCCTTAAATCGACTAAAG
ACTCCACGACGATGTCCTTACCTTGTAGTAGAATTCAAATTGATGATGGTTTGTTTTTGTTTTTAACACTAATACAGGTGTTGATGTGAACGGTAACAATGCTGCTCCAATCTACAAGTT
CCTCAAGTCAAGCAAAGGTGGCCTCTTTGGGGATGGTATCAAGTGGAACTTTGCCAAGTTCCTCATCAACAAAGAGGGGCAGGTGGTTGATCGATACGCTCCTACTACCTCCCCTCTCAG
CTTCGAGGTACATCCGAGTTATGTTTCATTTTCGATTCTCCTGATCGATGACTAACTCTGACCATGTATATATTTCCTTTGGTAAAATTTGCAGAAAAAGATGTGAAGAAACTGCTTGGG
GTTGCCTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA