Entry information : LuGPx220
Entry ID 12237
Creation 2013-05-29 (Qiang LI)
Last sequence changes 2013-05-30 (Qiang Li)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2013-05-30 (Qiang LI)
Peroxidase information: LuGPx220
Name LuGPx220
Class Plant glutathione peroxidase    [Orthogroup: Gpx2001]
Taxonomy Eukaryota Viridiplantae Streptophyta Linaceae Linum
Organism Linum usitatissimum (flax)    [TaxId: 4006 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LuGPx220
start..stop
S start..stop
LuGPx46 454 6.22e-165 1..238 1..236
PtGPx06-2 325 4.63e-114 1..238 1..238
LuGPx40 321 2.77e-113 70..238 1..169
ThasGPx06-2 314 1.28e-109 34..237 41..239
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '12237' 'complement(join(321860..321892,321993..322160,322378..322496,322762..322823,322913..322989,323070..323327))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 323070..323327 256 N° 2 322913..322989 75 N° 3 322762..322823 60 N° 4 322378..322496 117
N° 5 321993..322160 166 N° 6 321860..321892 31  
complement(join(321860..321892,321993..322160,322378..322496,322762..322823,3229 13..322989,323070..323327))


exon

Literature and cross-references LuGPx220
DNA ref. Phytozome 12:   scaffold835 (323327..321860)
Protein sequence: LuGPx220
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   238
PWM (Da):   %s   26276.59  
PI (pH):   %s   9.86
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MLCSSIRNLARKNLIFTVTASSASSLLRTRPLRSISYLGLSDSRLPHRRSVSLNQSPVLVACSARFDRAMASNSKAPQSIYDFTVKDARGNDVDLSTYKGKVLLIVNVASQCGLTNSNYT
ELTELYKKYKD
GLEILAFPCNQFGSQEPGSNEQIMEFACTRFKAEYPIFDVDVNGNNAAPIYKFLKSSKGGLFGDGIKWNFAKFLINKEGQVVDRYAPTTSPLSFEKDVKKLLGVA*

Retrieve as FASTA  
Remarks Complete sequence from genomic. Correct prediction.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTCTGTTCTTCAATCCGCAACCTCGCCCGTAAAAATCTCATCTTTACAGTTACAGCCTCATCCGCTTCTTCTCTTCTTCGCACCAGACCTCTCCGATCGATTTCTTATCTGGGTTTG
TCCGATTCTCGTCTTCCGCATCGGCGATCAGTTTCCTTGAACCAGTCCCCCGTCTTGGTTGCTTGTTCTGCCAGATTCGATCGAGCTATGGCCAGCAACTCCAAAGCTCCTCAGTCCATT
TACGACTTCACTGTCAAG
GTATAAATAAAATTGGGGGTTTCCTTGTATTGGATTGAAATTATTGGCTGTCTGAATTTTTGGATTCTGGTTGTTTGCAGGAGACGCTAGAGGGAATGATGT
TGATCTCAGTACTTACAAGGGCAAAGTTCTTTTGATTGTCAATGTCGCCTCCCAATG
GTAAATTTCCCAGCTTTATTTCACTAAGGGGTTAGTTGTGTATGGAACATGAAAATTTACTGT
TTGTTGGTCTTTGAACTTTGTTGCAGTGTGGCTTGACCAATTCGAATTACACTGAGCTGACTGAGCTGTACAAGAAATACAAAGATCAAGGTTTTCCTCTTCGCCCAGATTCTGTGTTTG
ATTGTGATTAGTGACATAAGAGTACATTCAATCCTTGGCTTGTGTGCATAATTACTAATGGTCTTCTGAATCGGATTATCGAGCTTATTCATTACAAGTACTGTATTCATTCTTGGCCTT
CAAGTAGAGGTGTTGTGGGAAATTATCAGTAATCTATTTGATCTCAGTCTAAGCTCAATGGTCTGTGTTTGTGATGACTAGTAACTCATTTTCCCCCACTTGTTGGCTGGAGCAGGCGCC
TAGAGATCTTGGCTTTCCCTTGCAATCAGTTTGGATCTCAGGAACCTGGAAGCAACGAGCAAATCATGGAGTTTGCTTGTACTCGCTTCAAGGCCGAGTACCCCATTTTCGACAAG
GTGA
GGTTCGGAGGTCGACTATACAATTAACCATGATCTAGACTAGAGACGCTTCAAACCAAATATTTTAGCTGTGGTGTTATGAATACTCAAGGCATCAATTAACCTTATGAATACCCATATC
CTTAAATCGACTAAAGACTCTACGACGATGTGCATACCTTGTAGTAGAATTCAACTTGATGGTAGTTTGTTTTTGTTTTCAACACTAATACAGGTGTTGATGTGAACGGGAACAATGCTG
CTCCAATCTACAAGTTCCTCAAGTCAAGCAAAGGTGGCCTCTTTGGGGATGGTATCAAGTGGAACTTTGCCAAGTTCCTCATCAACAAAGAGGGGCAGGTGGTCGATCGCTATGCTCCTA
CTACCTCCCCTCTCAGCTTCGAG
GTAAGCAGATAAAACACACCCGAGTTATGTTTCCTTTTCGGTTGTCCTGATCGATGACTAACTCTGCCCATGTATGTATTTCCTTTGGTAAAATTTG
CAGAAAAAGATGTGAAAAAACTGCTTGGGGTTGCCTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTCTGTTCTTCAATCCGCAACCTCGCCCGTAAAAATCTCATCTTTACAGTTACAGCCTCATCCGCTTCTTCTCTTCTTCGCACCAGACCTCTCCGATCGATTTCTTATCTGGGTTTG
TCCGATTCTCGTCTTCCGCATCGGCGATCAGTTTCCTTGAACCAGTCCCCCGTCTTGGTTGCTTGTTCTGCCAGATTCGATCGAGCTATGGCCAGCAACTCCAAAGCTCCTCAGTCCATT
TACGACTTCACTGTCAAG
GACGCTAGAGGGAATGATGTTGATCTCAGTACTTACAAGGGCAAAGTTCTTTTGATTGTCAATGTCGCCTCCCAATGTGGCTTGACCAATTCGAATTACACT
GAGCTGACTGAGCTGTACAAGAAATACAAAGATCAAG
GCCTAGAGATCTTGGCTTTCCCTTGCAATCAGTTTGGATCTCAGGAACCTGGAAGCAACGAGCAAATCATGGAGTTTGCTTGT
ACTCGCTTCAAGGCCGAGTACCCCATTTTCGACAAG
GTTGATGTGAACGGGAACAATGCTGCTCCAATCTACAAGTTCCTCAAGTCAAGCAAAGGTGGCCTCTTTGGGGATGGTATCAAG
TGGAACTTTGCCAAGTTCCTCATCAACAAAGAGGGGCAGGTGGTCGATCGCTATGCTCCTACTACCTCCCCTCTCAGCTTCGAG
AAAGATGTGAAAAAACTGCTTGGGGTTGCCTAG

Retrieve as FASTA