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Entry information : CbraAPx03 (g29363.t1 / CHBRA33g00530)
Entry ID 12960
Creation 2014-09-09 (Christophe Dunand)
Last sequence changes 2015-12-31 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2016-01-04 (Achraf Jemmat)
Peroxidase information: CbraAPx03 (g29363.t1 / CHBRA33g00530)
Name (synonym) CbraAPx03 (g29363.t1 / CHBRA33g00530)
Class Ascorbate peroxidase    [Orthogroup: APx2003]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraAPx03
start..stop		 S start..stop
NhyAPx04 408 2.14e-144 1..317 1..297
SmAPx02-1_0 360 1.24e-125 6..320 3..297
SmAPx02-2_60 360 1.78e-125 6..320 3..297
SpraAPx03 353 1.11e-122 7..320 4..300
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2805849..2806811 961  
join(2805849..2806811)


exon

Literature and cross-references CbraAPx03 (g29363.t1 / CHBRA33g00530)
Protein sequence: CbraAPx03 (g29363.t1 / CHBRA33g00530)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   320
PWM (Da):   %s   34784.98 Transmb domain:   %s   o291-313i
PI (pH):   %s   9.57
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MSISYVPVVD EAYKKAVAGL RKDMREFIKE KNCAPLMLRL AWHDAASYCK KTRTGGPNGS IRLEAELNYK PNAGLRTAVG WCEEWRKKFP LVSFADIVQL GGVLAVELTG GPAIDFMPGR  KDSSISTPED RLPDPHKDAA HLRQLCDRLG LRDKEIVVLS GGHTIGRAHK ERTGFEGPWT REPFKFDNGY FKELLGAEKE GLLRMPTDKA LVMDAGLRKY VEAYAKDNSL FLRDYAAAHK 
KFSELGCRET SPSFALAVTA AEAAAKHSGS RRGSGGSGAA AGSLSNQLSL SLLGQSAVGI AATVLVCILG YLYEMRRRAA 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq and genomic (scaffold_33, no intron).
DNA ►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTCGATTT CGTACGTGCC TGTGGTGGAC GAAGCGTACA AGAAGGCTGT TGCAGGGCTG CGCAAGGATA TGCGCGAGTT CATAAAGGAG AAGAACTGCG CACCACTGAT GCTCAGGCTT  GCATGGCACG ATGCCGCCTC CTACTGCAAG AAGACGAGGA CGGGCGGGCC TAACGGTTCA ATCAGGCTGG AAGCGGAGCT GAACTACAAG CCGAACGCAG GATTGAGAAC GGCAGTGGGC  TGGTGTGAGG AGTGGAGGAA GAAGTTCCCT CTCGTATCCT TCGCAGACAT AGTGCAACTT GGAGGCGTGC TAGCTGTCGA ACTCACGGGG GGGCCAGCAA TAGACTTCAT GCCCGGCAGG  AAAGACTCGT CCATAAGCAC TCCGGAAGAT CGGTTACCTG ATCCGCACAA AGATGCCGCA CATCTGCGAC AACTGTGCGA CCGGTTGGGT CTCAGGGACA AAGAGATCGT GGTGTTGTCA  GGGGGCCACA CCATAGGAAG AGCGCACAAG GAACGGACAG GATTCGAAGG GCCCTGGACT AGAGAACCGT TCAAATTCGA TAACGGGTAT TTCAAGGAGC TGCTGGGTGC CGAGAAAGAG  GGTCTTCTGC GAATGCCAAC GGACAAGGCG CTGGTGATGG ATGCCGGACT AAGAAAGTAC GTGGAGGCGT ACGCGAAAGA CAACAGCTTG TTCCTCCGTG ATTACGCGGC AGCTCATAAG  AAGTTCTCTG AATTGGGGTG CCGTGAGACA TCGCCGAGTT TTGCACTTGC AGTGACAGCG GCAGAGGCAG CAGCCAAACA TTCCGGTTCC AGAAGAGGAT CAGGAGGGAG CGGAGCAGCA  GCAGGGAGCT TGAGTAACCA GCTCTCTCTC TCGCTGCTCG GACAGTCGGC TGTCGGGATC GCAGCGACTG TGCTGGTTTG CATATTGGGA TACCTGTACG AGATGAGGCG AAGGGCAGCG 
TGA 

Retrieve as FASTA  
CDS►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTCGATTT CGTACGTGCC TGTGGTGGAC GAAGCGTACA AGAAGGCTGT TGCAGGGCTG CGCAAGGATA TGCGCGAGTT CATAAAGGAG AAGAACTGCG CACCACTGAT GCTCAGGCTT  GCATGGCACG ATGCCGCCTC CTACTGCAAG AAGACGAGGA CGGGCGGGCC TAACGGTTCA ATCAGGCTGG AAGCGGAGCT GAACTACAAG CCGAACGCAG GATTGAGAAC GGCAGTGGGC  TGGTGTGAGG AGTGGAGGAA GAAGTTCCCT CTCGTATCCT TCGCAGACAT AGTGCAACTT GGAGGCGTGC TAGCTGTCGA ACTCACGGGG GGGCCAGCAA TAGACTTCAT GCCCGGCAGG  AAAGACTCGT CCATAAGCAC TCCGGAAGAT CGGTTACCTG ATCCGCACAA AGATGCCGCA CATCTGCGAC AACTGTGCGA CCGGTTGGGT CTCAGGGACA AAGAGATCGT GGTGTTGTCA  GGGGGCCACA CCATAGGAAG AGCGCACAAG GAACGGACAG GATTCGAAGG GCCCTGGACT AGAGAACCGT TCAAATTCGA TAACGGGTAT TTCAAGGAGC TGCTGGGTGC CGAGAAAGAG  GGTCTTCTGC GAATGCCAAC GGACAAGGCG CTGGTGATGG ATGCCGGACT AAGAAAGTAC GTGGAGGCGT ACGCGAAAGA CAACAGCTTG TTCCTCCGTG ATTACGCGGC AGCTCATAAG  AAGTTCTCTG AATTGGGGTG CCGTGAGACA TCGCCGAGTT TTGCACTTGC AGTGACAGCG GCAGAGGCAG CAGCCAAACA TTCCGGTTCC AGAAGAGGAT CAGGAGGGAG CGGAGCAGCA  GCAGGGAGCT TGAGTAACCA GCTCTCTCTC TCGCTGCTCG GACAGTCGGC TGTCGGGATC GCAGCGACTG TGCTGGTTTG CATATTGGGA TACCTGTACG AGATGAGGCG AAGGGCAGCG 
TGA 

Retrieve as FASTA