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Entry information : SpolAPx04 (Spipo9G0044500)
Entry ID 13220
Creation 2015-06-09 (Christophe Dunand)
Last sequence changes 2015-06-17 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2015-06-17 (Christophe Dunand)
Peroxidase information: SpolAPx04 (Spipo9G0044500)
Name (synonym) SpolAPx04 (Spipo9G0044500)
Class Ascorbate peroxidase    [Orthogroup: APx2002]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela
Organism Spirodela polyrhiza (great duckweed)    [TaxId: 29656 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SpolAPx04
start..stop		 S start..stop
LminAPx08 584 0 1..362 1..362
LminAPx09 570 0 1..362 1..362
SpolAPx02 543 0 41..355 53..365
CescAPx04 529 0 17..355 25..358
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2885476..2885658 181 N° 2 2885215..2885358 142 N° 3 2884176..2884296 119 N° 4 2884001..2884101 99
N° 5 2883786..2883873 86 N° 6 2883019..2883086 66 N° 7 2882846..2882932 85 N° 8 2881969..2882043 73
N° 9 2881814..2881891 76 N° 10 2881615..2881719 103 N° 11 2881501..2881542 40  
complement(join(2881501..2881542,2881615..2881719,2881814..2881891,2881969..2882 043,2882846..2882932,2883019..2883086,2883786..2883873,2884001..2884101,2884176. .2884296,2885215..2885358,2885476..2885658))


exon

Literature and cross-references SpolAPx04 (Spipo9G0044500)
Protein sequence: SpolAPx04 (Spipo9G0044500)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   363 (295)
PWM (Da):   %s   39588.93 (31878.1)  
PI (pH):   %s   8.08 (8.21) Peptide Signal:   %s   cut: 20 range:20-314
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MACLRASLAAPAAAASRAAVTPYTTPFPSSAWSTLGSNSPSASRISLRFFAVSPLRSHMFLNLQAGRRSVRAFSGKPSATSFASDPSQLKSARKDIEELLRTTFCHPIMIRLGWHDAGTY
DKNINEWPKRGGANGSLRFEVELKHAANAGLVNALARLQPIKDRYPGITYADLFQLASATAVEAAGGPKIPMKYGRRDVTEPNQCPEEGRLPDAGPPSPAAHLRAVFYRMGLDDKEIVAL
SGAHTLGRARPDRSGWGKAETKYTKDGPGTPGGHSWTVQWLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAEDQDAFFKDYAEAHAKLSDLGAEFDPPQGFSIDGVSDS
TEV*

Retrieve as FASTA  
Remarks Complete sequence from genomic (introns). Incorrect prediction from Phytozome (two first exons are missing).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTGCCTTCGAGCTTCCCTCGCTGCCCCCGCCGCCGCCGCATCGAGGGCGGCGGTGACGCCTTACACAACGCCTTTCCCTTCTTCCGCCTGGTCCACTCTCGGGTCTAACTCCCCC
TCCGCCTCCCGCATCTCCCTGAGGTTCTTCGCCGTCTCCCCTCTCCGCTCTCACATGTTCCTGGTAAAATAACTTGCTACTTGCTGTGGATTAAATGCGAACCTCTTTGACGTTGAGAAT
GGCGAAATTTTAATGGCATTGCTCACCGGTGTGTCTTCACGTGCTCTTTTCCGGTGGCAGAAAATCTACAGGCCGGAAGGAGGTCGGTGCGCGCATTTTCCGGAAAACCTTCTGCAACGT
CCTTCGCTTCTGATCCTAGCCAGTTGAAGAGCGCGAGAAAAGATATCGAGGAGCTGCTTCGAACTACGTTCTGCCATCCGATCATGGTTGAGGATATAGCAAGCTACTGTTCTTCGAACG
TTCTTCCGCTAATTTCGCTCCCTTGTTCGACCGTTTCGTGGTTGACACAAGAATAGATTGCATTTCGTTGATGCCTAGTGCATAACTTCTCTTGGATTTAGAAGCTAGAGGCTCTTGGTC
CTTTTCCCCCATGTCGTGATTTCATTTGTATCGATGATTCTTCTGGTTGCAAACTGCGTTTTATTGGCTGTTCAATCTGGTAGACTGCTAACCTTAATGCCACTCTGGTACTGTCACTTA
TCGTTGATTGACGATAAAGTGCAGGACGTTTTAGTGCTCGCCGTGTGAATTATTTAGTCTTAAGTTCTGAAGAAGTCAAACTGTGTTTGTATCGGTGCCGTGGATATTTTTTTATTGATT
ATTTAATATAAGGGGCAAGTAAATATTCAAAAGGGTTTATGTGAAACAAGGGAGGAATGAATCGTTTAGAAAATACAAATATTGTAATAACCATAAACCCTAAAGTTTCCTTTAGTGAGC
GTGAATGAGCCCAAAATTGATAACATTTGGCCCGGCTTCCGTTTGGAAAATTGTAGGGACTTTCGAGGTCATGATAGTGGAGCCTTTCCAATTTTGGTGGAAGAAAAGAAATGACGAGTC
TGGTTAGATGAAAGTCAATCATTCTCTCCTTGTCATTGGAATGTTAAGATTAAGATGAAGCTCCACATGAGAGCCCCTTGTTGCAAACAGGAGAAATGGCAAAGGTTTGATGTTATGGCA
CCATTTGGATGCTTGGGCCACATAAGCCTAAATCACATTTATTTGTGTGAAATGTTCCCCTTGTGGACAACTATTGTTCCTAAATCTTGTCTTTTTGAGAGTAACTATCGCAATGTTTCC
GGTTGATTTTATCTGGTAACTCATTTTCTGGGTTCCTATTTTAGATATTCGGTTGGGATGGCATGATGCTGGTACCTACGATAAGAATATCAACGAATGGCCTAAAAGAGGTGGCGCAAA
TGGAAGCCTGAGATTTGAAGTAGAGCTGAAACATGCAGCTAATGCCGGTTTGTGATTGTTCTGGACCATCTCATTCAAAGATTCTTGATTTATGTTGCTGTCCATTGACATGATTCTGCA
GGCGCCTTGTCAATGCCTTGGCGCGACTTCAGCCCATTAAGGACAGATACCCTGGTATTACATATGCTGATCTATTCCAGTTAGCTAGTGCTACAGCAGTGGAGGTTTGCATTTATTTCT
GTCTCTGATATGGTTCATTAGTGCTAAGGAAGAGGGAATTCGAAATTTAAAGTTTAGTGTAAATTGATAGCAAATGGTCATTTCTTCTTCTTCTTCTTTTTCAACCATCAGGCGCTGCTG
GAGGCCCGAAAATTCCTATGAAGTATGGTCGTAGAGATGTCACTGAACCCAATCAATGCCCAGAAGAGGGCAGGCTTCCTGGTATGGCAATATCAAGGAACTGATTTGCTATTCAAATTT
CATTGAGGATTCAATGTACATTTCTATTGTGCCCTTGGGATTTCCACCTAAATCTGTAAAGCAAGAAAAGAGCCTGCAAAGTGTCACCCGTGCACCCCTTAGATATCATTTTATGTGCCA
CATATAATCATTTATTAGTTTTAGCTTTTCTAGTATCATGGGCATATTTCAGTCTTTATCCACTTACTCCATGTTCTCTTTAGCTACTTAAGGTGATGCGCACAAGTGCTACATCTTTTG
GATGTTGTACGTTGCCATTTATTGCAGTACAATGCACTTAATTTCCCTCTTGATTAAATATTTATAATTTATGTTCATGTGGCCAGCAGTAAAAAGTATGCTTCTCTTAAAAAAGTGTCG
GCTGTGTTAGCATAATCCCTTGGTACGATTTTCTTTTAGGTGAAGTCAACAATAATTGTATGACACTTTATCCATTCTGGTGATGGAGTTTTTTCCTTCTGGACTTGCCATTTCTTTTCT
CAATTTCCTGCTTACATGGCCTCACAATGATCAATACTGTTCTCAGGGGATTAACCTCACATAGCATTGACCGGGTTACCTTTGATTTATTGGTGTCCTTTTATGGTTGCCATTCCTGCT
CACATTATTCAGTTATTGATTTACACTACCAGAGGGCTTACACTTGTTTTAAATGCCTAGATATGCCGGCCCACCCTCACCTGCTGCACATCTGCGGGCTGTTTTCTACAGAATGGGTCT
TGATGATAAGGTTTGCATTACAGGATGAGGTCTTGAGATCCACTTTCACGCACAGCAAGATTACATCGCTCATTTCTAATCATCGCATCTATGTAGGAGAAATTGTTGCATTATCAGGTG
CTCATACATTGGGAAGGGCCAGACCTGATCGCAGTGGTTGGGGCAAGGCGGAGACGAAGTATACGGTATGGATACCCTGTCCATTACAAAAGCTGCTATGGCAGCATGCTGATTGTTTTC
CTCCTGGGAGCTATAAACCTTCTCTTAGGGGCATGTGTGATGGAGATGAGCGCAAGAACAGTGCTCAAGTCATATACCAAAATCCCTACCTGTTCTCCCTATATTATAAATTTATTTTTC
TTTTTTCATTAAAAAATTGTAATAATCTGGTATTATGCTTGTGACTAACACCAGAAGTAAACCATGACATTCATTGGAAATATTCAACCAGAGGACCCTCGAAGTGAGATTTTCGTCTGA
AGCTGATTCCCCCCCCCCCCCCGCCGTTAATGCTAATAAAGCATTTGCATTCAGCTTCATGGGTCATCCATGCAGAGCAACTAGGAAGGGTTCCTCAAATGGAAATCATAGATTAAGTAG
AAAGAAGTTGAAGTGTTTATTTTATGTCATGCAACCTTTCACATTTTTTTCCAGTTGATTAAAGCCGTTGCATCTCCAATCCCATGCATTGCTTTACAAGCTTAGTTTTTCAAATATCTA
CTCTGATTGTGTCGGACGGAATATTAACTATGCAAATATATATGTCATAGAATGAATGAGTGTCAATAATTAAGGCATGCCAAGGACATGCTCCTCTTCCCTCCCCTGAAAAAAAAGCAA
AATGATATAGAGGCCACCACTGCGTAGGATGGTTTGCTTATTGTTAGTCTAGAACATAATATCTTTCGATCTTGTTACATATGGTTTAATGAAGATGCTTTCTTTTTGTGGAGAAATTAT
CTCACCTGATCATCTTCTGCTTGACAGAAAAGGATGGCCCTGGGACCCCTGGTGGTCATTCATGGACTGTCCAGTGGTTGAAGTTCGATAACAGCTATTTTAAGGTAAGAAAAGAAAGCT
ACCCTTCTTTCTTCTTTTATTCCCTGGTGCGTGAATCCAGACTGCCGGTTATTTTTTCCAGGAGATATCAAAGAACGAAGAGACGAAGATCTACTTGTTCTGCCCACTGACGCTGCCCTC
TTTGAAGATCCCTCCTTCAAGGCAAAACGAAACTCTGAACAAAGTCAGACCATATTCGAGTTAGGCAAATGTGGGTCTAATCTGTTGTCTTCATTGAAATCCGGTGCTCCTTCAGGTGTG
TATGCTGAGAAGTACGCTGAGGACCAGGACGCCTTCTTCAAGGACTACGCAGAGGCCCATGCCAAACTCAGTGACCTTGGCGCCGAGTTCGACCCTCCTCAGGTGCGTCTCTGAACCACC
ATCTCTCCTCCTTGGCAGCAGATAATATATAGCTTATGATGACCGCCCAACCAGGGGGCTTCTCCATTGATGGCGTCTCCGACAGCACCGAGGTCTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTGCCTTCGAGCTTCCCTCGCTGCCCCCGCCGCCGCCGCATCGAGGGCGGCGGTGACGCCTTACACAACGCCTTTCCCTTCTTCCGCCTGGTCCACTCTCGGGTCTAACTCCCCC
TCCGCCTCCCGCATCTCCCTGAGGTTCTTCGCCGTCTCCCCTCTCCGCTCTCACATGTTCCTGAATCTACAGGCCGGAAGGAGGTCGGTGCGCGCATTTTCCGGAAAACCTTCTGCAACG
TCCTTCGCTTCTGATCCTAGCCAGTTGAAGAGCGCGAGAAAAGATATCGAGGAGCTGCTTCGAACTACGTTCTGCCATCCGATCATGATTCGGTTGGGATGGCATGATGCTGGTACCTAC
GATAAGAATATCAACGAATGGCCTAAAAGAGGTGGCGCAAATGGAAGCCTGAGATTTGAAGTAGAGCTGAAACATGCAGCTAATGCCGGCCTTGTCAATGCCTTGGCGCGACTTCAGCCC
ATTAAGGACAGATACCCTGGTATTACATATGCTGATCTATTCCAGTTAGCTAGTGCTACAGCAGTGGAGGCTGCTGGAGGCCCGAAAATTCCTATGAAGTATGGTCGTAGAGATGTCACT
GAACCCAATCAATGCCCAGAAGAGGGCAGGCTTCCTGATGCCGGCCCACCCTCACCTGCTGCACATCTGCGGGCTGTTTTCTACAGAATGGGTCTTGATGATAAGGAAATTGTTGCATTA
TCAGGTGCTCATACATTGGGAAGGGCCAGACCTGATCGCAGTGGTTGGGGCAAGGCGGAGACGAAGTATACGAAGGATGGCCCTGGGACCCCTGGTGGTCATTCATGGACTGTCCAGTGG
TTGAAGTTCGATAACAGCTATTTTAAGGATATCAAAGAACGAAGAGACGAAGATCTACTTGTTCTGCCCACTGACGCTGCCCTCTTTGAAGATCCCTCCTTCAAGGTGTATGCTGAGAAG
TACGCTGAGGACCAGGACGCCTTCTTCAAGGACTACGCAGAGGCCCATGCCAAACTCAGTGACCTTGGCGCCGAGTTCGACCCTCCTCAGGGCTTCTCCATTGATGGCGTCTCCGACAGC
ACCGAGGTCTGA

Retrieve as FASTA