View Redoxidase 13220

Entry information : SpolAPx04 (Spipo9G0044500)

Entry ID	13220
Creation	2015-06-09 (Christophe Dunand)
Last sequence changes	2015-06-17 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2015-06-17 (Christophe Dunand)

Peroxidase information: SpolAPx04 (Spipo9G0044500)

Name (synonym)

SpolAPx04 (Spipo9G0044500)

Class

Ascorbate peroxidase [Orthogroup: APx2002]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela

Organism

Spirodela polyrhiza (great duckweed) [TaxId: 29656 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SpolAPx04 start..stop	S start..stop
LminAPx08	584	0	1..362	1..362
LminAPx09	570	0	1..362	1..362
SpolAPx02	543	0	41..355	53..365
CescAPx04	529	0	17..355	25..358

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	2885476..2885658	181	N° 2	2885215..2885358	142	N° 3	2884176..2884296	119	N° 4	2884001..2884101	99
N° 5	2883786..2883873	86	N° 6	2883019..2883086	66	N° 7	2882846..2882932	85	N° 8	2881969..2882043	73
N° 9	2881814..2881891	76	N° 10	2881615..2881719	103	N° 11	2881501..2881542	40
complement(join(2881501..2881542,2881615..2881719,2881814..2881891,2881969..2882 043,2882846..2882932,2883019..2883086,2883786..2883873,2884001..2884101,2884176. .2884296,2885215..2885358,2885476..2885658))

Literature and cross-references SpolAPx04 (Spipo9G0044500)

Protein sequence: SpolAPx04 (Spipo9G0044500)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	363 (295)
PWM (Da):	39588.93 (31878.1)	Transmb domain:	i7-29o
PI (pH):	8.08 (8.21)	Peptide Signal:	cut: 20 range:20-314

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MACLRASLAAPAAAASRAAVTPYTTPFPSSAWSTLGSNSPSASRISLRFFAVSPLRSHMFLNLQAGRRSVRAFSGKPSATSFASDPSQLKSARKDIEELLRTTFCHPIMIRLGWHDAGTY
DKNINEWPKRGGANGSLRFEVELKHAANAGLVNALARLQPIKDRYPGITYADLFQLASATAVEAAGGPKIPMKYGRRDVTEPNQCPEEGRLPDAGPPSPAAHLRAVFYRMGLDDKEIVAL
SGAHTLGRARPDRSGWGKAETKYTKDGPGTPGGHSWTVQWLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAEDQDAFFKDYAEAHAKLSDLGAEFDPPQGFSIDGVSDS
TEV*

Retrieve as FASTA

Remarks

Complete sequence from genomic (introns). Incorrect prediction from Phytozome (two first exons are missing).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCCTGCCTTCGAGCTTCCCTCGCTGCCCCCGCCGCCGCCGCATCGAGGGCGGCGGTGACGCCTTACACAACGCCTTTCCCTTCTTCCGCCTGGTCCACTCTCGGGTCTAACTCCCCC
TCCGCCTCCCGCATCTCCCTGAGGTTCTTCGCCGTCTCCCCTCTCCGCTCTCACATGTTCCTGGTAAAATAACTTGCTACTTGCTGTGGATTAAATGCGAACCTCTTTGACGTTGAGAAT
GGCGAAATTTTAATGGCATTGCTCACCGGTGTGTCTTCACGTGCTCTTTTCCGGTGGCAGAAAATCTACAGGCCGGAAGGAGGTCGGTGCGCGCATTTTCCGGAAAACCTTCTGCAACGT
CCTTCGCTTCTGATCCTAGCCAGTTGAAGAGCGCGAGAAAAGATATCGAGGAGCTGCTTCGAACTACGTTCTGCCATCCGATCATGGTTGAGGATATAGCAAGCTACTGTTCTTCGAACG
TTCTTCCGCTAATTTCGCTCCCTTGTTCGACCGTTTCGTGGTTGACACAAGAATAGATTGCATTTCGTTGATGCCTAGTGCATAACTTCTCTTGGATTTAGAAGCTAGAGGCTCTTGGTC
CTTTTCCCCCATGTCGTGATTTCATTTGTATCGATGATTCTTCTGGTTGCAAACTGCGTTTTATTGGCTGTTCAATCTGGTAGACTGCTAACCTTAATGCCACTCTGGTACTGTCACTTA
TCGTTGATTGACGATAAAGTGCAGGACGTTTTAGTGCTCGCCGTGTGAATTATTTAGTCTTAAGTTCTGAAGAAGTCAAACTGTGTTTGTATCGGTGCCGTGGATATTTTTTTATTGATT
ATTTAATATAAGGGGCAAGTAAATATTCAAAAGGGTTTATGTGAAACAAGGGAGGAATGAATCGTTTAGAAAATACAAATATTGTAATAACCATAAACCCTAAAGTTTCCTTTAGTGAGC
GTGAATGAGCCCAAAATTGATAACATTTGGCCCGGCTTCCGTTTGGAAAATTGTAGGGACTTTCGAGGTCATGATAGTGGAGCCTTTCCAATTTTGGTGGAAGAAAAGAAATGACGAGTC
TGGTTAGATGAAAGTCAATCATTCTCTCCTTGTCATTGGAATGTTAAGATTAAGATGAAGCTCCACATGAGAGCCCCTTGTTGCAAACAGGAGAAATGGCAAAGGTTTGATGTTATGGCA
CCATTTGGATGCTTGGGCCACATAAGCCTAAATCACATTTATTTGTGTGAAATGTTCCCCTTGTGGACAACTATTGTTCCTAAATCTTGTCTTTTTGAGAGTAACTATCGCAATGTTTCC
GGTTGATTTTATCTGGTAACTCATTTTCTGGGTTCCTATTTTAGATATTCGGTTGGGATGGCATGATGCTGGTACCTACGATAAGAATATCAACGAATGGCCTAAAAGAGGTGGCGCAAA
TGGAAGCCTGAGATTTGAAGTAGAGCTGAAACATGCAGCTAATGCCGGTTTGTGATTGTTCTGGACCATCTCATTCAAAGATTCTTGATTTATGTTGCTGTCCATTGACATGATTCTGCA
GGCGCCTTGTCAATGCCTTGGCGCGACTTCAGCCCATTAAGGACAGATACCCTGGTATTACATATGCTGATCTATTCCAGTTAGCTAGTGCTACAGCAGTGGAGGTTTGCATTTATTTCT
GTCTCTGATATGGTTCATTAGTGCTAAGGAAGAGGGAATTCGAAATTTAAAGTTTAGTGTAAATTGATAGCAAATGGTCATTTCTTCTTCTTCTTCTTTTTCAACCATCAGGCGCTGCTG
GAGGCCCGAAAATTCCTATGAAGTATGGTCGTAGAGATGTCACTGAACCCAATCAATGCCCAGAAGAGGGCAGGCTTCCTGGTATGGCAATATCAAGGAACTGATTTGCTATTCAAATTT
CATTGAGGATTCAATGTACATTTCTATTGTGCCCTTGGGATTTCCACCTAAATCTGTAAAGCAAGAAAAGAGCCTGCAAAGTGTCACCCGTGCACCCCTTAGATATCATTTTATGTGCCA
CATATAATCATTTATTAGTTTTAGCTTTTCTAGTATCATGGGCATATTTCAGTCTTTATCCACTTACTCCATGTTCTCTTTAGCTACTTAAGGTGATGCGCACAAGTGCTACATCTTTTG
GATGTTGTACGTTGCCATTTATTGCAGTACAATGCACTTAATTTCCCTCTTGATTAAATATTTATAATTTATGTTCATGTGGCCAGCAGTAAAAAGTATGCTTCTCTTAAAAAAGTGTCG
GCTGTGTTAGCATAATCCCTTGGTACGATTTTCTTTTAGGTGAAGTCAACAATAATTGTATGACACTTTATCCATTCTGGTGATGGAGTTTTTTCCTTCTGGACTTGCCATTTCTTTTCT
CAATTTCCTGCTTACATGGCCTCACAATGATCAATACTGTTCTCAGGGGATTAACCTCACATAGCATTGACCGGGTTACCTTTGATTTATTGGTGTCCTTTTATGGTTGCCATTCCTGCT
CACATTATTCAGTTATTGATTTACACTACCAGAGGGCTTACACTTGTTTTAAATGCCTAGATATGCCGGCCCACCCTCACCTGCTGCACATCTGCGGGCTGTTTTCTACAGAATGGGTCT
TGATGATAAGGTTTGCATTACAGGATGAGGTCTTGAGATCCACTTTCACGCACAGCAAGATTACATCGCTCATTTCTAATCATCGCATCTATGTAGGAGAAATTGTTGCATTATCAGGTG
CTCATACATTGGGAAGGGCCAGACCTGATCGCAGTGGTTGGGGCAAGGCGGAGACGAAGTATACGGTATGGATACCCTGTCCATTACAAAAGCTGCTATGGCAGCATGCTGATTGTTTTC
CTCCTGGGAGCTATAAACCTTCTCTTAGGGGCATGTGTGATGGAGATGAGCGCAAGAACAGTGCTCAAGTCATATACCAAAATCCCTACCTGTTCTCCCTATATTATAAATTTATTTTTC
TTTTTTCATTAAAAAATTGTAATAATCTGGTATTATGCTTGTGACTAACACCAGAAGTAAACCATGACATTCATTGGAAATATTCAACCAGAGGACCCTCGAAGTGAGATTTTCGTCTGA
AGCTGATTCCCCCCCCCCCCCCGCCGTTAATGCTAATAAAGCATTTGCATTCAGCTTCATGGGTCATCCATGCAGAGCAACTAGGAAGGGTTCCTCAAATGGAAATCATAGATTAAGTAG
AAAGAAGTTGAAGTGTTTATTTTATGTCATGCAACCTTTCACATTTTTTTCCAGTTGATTAAAGCCGTTGCATCTCCAATCCCATGCATTGCTTTACAAGCTTAGTTTTTCAAATATCTA
CTCTGATTGTGTCGGACGGAATATTAACTATGCAAATATATATGTCATAGAATGAATGAGTGTCAATAATTAAGGCATGCCAAGGACATGCTCCTCTTCCCTCCCCTGAAAAAAAAGCAA
AATGATATAGAGGCCACCACTGCGTAGGATGGTTTGCTTATTGTTAGTCTAGAACATAATATCTTTCGATCTTGTTACATATGGTTTAATGAAGATGCTTTCTTTTTGTGGAGAAATTAT
CTCACCTGATCATCTTCTGCTTGACAGAAAAGGATGGCCCTGGGACCCCTGGTGGTCATTCATGGACTGTCCAGTGGTTGAAGTTCGATAACAGCTATTTTAAGGTAAGAAAAGAAAGCT
ACCCTTCTTTCTTCTTTTATTCCCTGGTGCGTGAATCCAGACTGCCGGTTATTTTTTCCAGGAGATATCAAAGAACGAAGAGACGAAGATCTACTTGTTCTGCCCACTGACGCTGCCCTC
TTTGAAGATCCCTCCTTCAAGGCAAAACGAAACTCTGAACAAAGTCAGACCATATTCGAGTTAGGCAAATGTGGGTCTAATCTGTTGTCTTCATTGAAATCCGGTGCTCCTTCAGGTGTG
TATGCTGAGAAGTACGCTGAGGACCAGGACGCCTTCTTCAAGGACTACGCAGAGGCCCATGCCAAACTCAGTGACCTTGGCGCCGAGTTCGACCCTCCTCAGGTGCGTCTCTGAACCACC
ATCTCTCCTCCTTGGCAGCAGATAATATATAGCTTATGATGACCGCCCAACCAGGGGGCTTCTCCATTGATGGCGTCTCCGACAGCACCGAGGTCTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA