View Redoxidase 13245

Entry information : SpolPrx42 ( Spipo6G0060300)

Entry ID	13245
Creation	2015-06-09 (Christophe Dunand)
Last sequence changes	2015-06-09 (Christophe Dunand)
Sequence status	complete
Reviewer	Catherine Mathe
Last annotation changes	2016-02-24 (Catherine Mathe)

Peroxidase information: SpolPrx42 ( Spipo6G0060300)

Name (synonym)

SpolPrx42 ( Spipo6G0060300)

Class

Class III peroxidase [Orthogroup: Prx013]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela

Organism

Spirodela polyrhiza (great duckweed) [TaxId: 29656 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SpolPrx42 start..stop	S start..stop
LminPrx88	526	0	15..321	4..310
LminPrx61	525	0	23..321	23..321
LminPrx60	525	0	23..321	23..321
PotacuPrx53	467	2.04e-167	16..321	11..316

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '13245' 'complement(join(5380563..5380948,5381488..5381653,5381742..5381933,5382443..5382664))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	5382443..5382664	220	N° 2	5381742..5381933	190	N° 3	5381488..5381653	164	N° 4	5380563..5380948	384
complement(join(5380563..5380948,5381488..5381653,5381742..5381933,5382443..5382 664))

Literature and cross-references SpolPrx42 ( Spipo6G0060300)

DNA ref.	Phytozome 12: pseudo6 (5382664..5380563)
Cluster/Prediction ref.	Phytozome Gene 12: 31505911

Protein sequence: SpolPrx42 ( Spipo6G0060300)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	321 (294)
PWM (Da):	34153.76 (31133.2)	Transmb domain:	i13-32o
PI (pH):	7.88 (7.93)	Peptide Signal:	cut: 28 range:28-321

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MASVTGVRGNLELCFLFFVFFLSLASGQLSSTYYDSSCPKALSTIRSAVRDAVAKERRMGASLLRLHFHDCFVNGCDGSVLLDDTASFTGEKTAGPNDRSLRGFDVVDSIKSQVESVCPQ
VVSCADILAVAARDSVVALGGPSWTVKLGRRDSTTASLSNANNDLPGPTSDLSTLISAFAKKGLSSSDMVALSGSHTIGQARCTTFRSRVYNDSNINSSFATSKQSSCPRSGSDDQLSPL
DTSTPSFFDGCYYKNLVGNKGLLHSDQELFNGGSTDSQVSNYAKNPTKFFTDFATAMVKMGSISPLLSPSGEVRVNCRKTN*

Retrieve as FASTA

Remarks

Promoter►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

TCTCTCTCTC ACACACACAC ACACACCCCA CCCCACCCCC ACCTCCCATC CCTCTCTCTT ACTTTCAAAA TCTTTCCTCT TTTCCTCAAT GATACATCTC TTTATTATCA AAAGATGGTA TTTCTATCAA TCTATGATAA GAAATAATTA AAAACCTTAT ATATGTTTAT TTTAGTGTTA GAAAGATGAA AGAATGATAA TAGGATAAGA AAAAATCTTA TTGCCTAATT CTCATAGGTA TTCGTCTAGA AAAATAAAGA TGTACACGTA ATGTAATTTA AATTTCTTGC AAACTTATCA AAAACATTAG GCTATGCAGT TTAGGATGAG CCCAAACATT TCAAAAAGTA GGGTGTTGAC CAATGGGTTA TTGGTATGAT TCGAATATTA TTGGTTGACT ACCCATCCCA CACTTCTTGC GTTCATAGTG GAGGACCCCA CCACCATGAA AAAAGCGAAA ACGTGGAAAG CACAGTAGTA GACGTAGGAT TGAAAGCTGA GAATACCTTA AGAGTGCATG TGGACGACTC GGCACCTTGC TAAAAAGGCA TATTTTATAT TGTTCTTCCA TGAATATCAC ATCTACTAAA ATAATTAAGA ATCATATGAT AGTATCCATA TCGTCATTTC ATAAATTTCA TTTTAGAGAT ATTTCAGATC AAATCCAAGG GATCTGGGTA TGGGCATGTA AGCTTAGAGT CTAGCTTGAC CTGATTGTCA TCAGCTAAGA GACATAGGTA AGCCCATCCT AAAATAAGAA CATGGCCGTT CTAATTGGAT CCGTCTTAGG ACTTCACTAG TCTCTTTTCT ACATATCATG AGCTAATTTC TCGTTAGGTG ACTGTCTCAT GGTTACCTAC GTGAGACCTA GTATCAGGGA CAAAGTAGTC TGGCGCTAAT CACAGTGATA CGAATGTCTG TTCGGCTCCT GAATTCAAGA AATACGTGGG CGCTCTCCTT GCTTGCTGAC CCGAAATTGA ATACGAACCA GGGTTAAGGT TACGCTAGAC TGAGTTCTTG ATGGAAGAAG TTGATCTGAC CGGTGAAGCT GCACGCATTG TACCTGTTTC TTCGATATTC GAATAAATAT GAGTGTCAAA CTTCCCTTCG CGTACCTTCA CAAGCTGAAA ATTATTATAA CATGTATGGT TGTTTGGGGA CTAAGTATCG TTTCACTCTT GGTTTGGATG TACGAACAAA ACTTTTAGAA GCCTCAATTG GGTATCCCCG TCCTCACTTC GTAATGAAAA TGGACCACAA CAACAGTTTA AGGATAAGAT CTTTCAATCC ATACGCGTAC GTCGAAAGAG ACCATGAATT TGGATTTTGT ATGGAACCCT TTACATATAA TGTAAAAAGA AGTTTGCCAA AGTTCCTTTC CACCGTGCAT GTCCCCACGG CACAAAGTCA TGAAAGAAAG GGCTTTTGAA TGACGGTCTC TACGGTAGGT TCGAAGTTCG GCAGGGTAGC ATGCTTGCCT TATAAACAAC AAGAATACAG ATCAACGCGT GCCTTAGTTA ATTGACTTGA GAGGGGATCA GTTAAAGCTG CCCAATGTGA CCCTCAAGTC GACGATCAAG AGCTGAGATC TTCCGAATCT GACGAAGAGA AGTCCACTAT CCACGAAACC ACCCAGACAC TTCTCTCTTC TTGATACCAA TGAGGTCTTC TTACGTAACG AATATGGACT CATGAAGTCC ATCTTTCTCG TGGCCTCCAC TAGGGCTCTA CCGTTCTCCG GATCTCCTCA TTGTGAGGGT TGGCGGGATT AGATCTCCTC TATCATTATC CTATGGTCAG GATGGGCAGG CCCCACCTTC CATTTTTTTA TCTCCAAAGC TTTGACGACG GAGGCGAGGT TTTGGCTTAG TGGGAGGAAC GAGGCGGCTG GCAGTGATAG GTCCAGCCAG AAGGCAACGT CTGCACCTTA TATAACTACA TGTCACTCGA CGGTTTCATG CTGCACCTAT GCTCTCCCCT CCTCGAGCTC TTCTTTGGCC ATGGCTTCCG TCACTGGCGT CCGTGGTAAC CTTGAGTTAT GCTTCCTCTT CTTCGTCTTC TTCCTCTCCC TAGCCTCAGG TCAACTGTCT TCAACTTACT ACGACTCCTC CTGCCCCAAG GCCCTTTCTA CGATCCGATC TGCAGTCAGA GATGCAGTGG CCAAGGAACG CCGCATGGGG GCCTCACTGC TTCGCCTCCA CTTCCACGAC TGCTTTGTGA ATGTAGGTCC TCTCCTAGAG AAGTCTCTGG TATTAATATT AGAGTGTATC ATCGAGCTCA TAGCATGCTA TCGTAACAGA GACAACACAG AAAGCCTACC CGTTCCTCTC CCTTCCCCTT CTTCCCTTTT CAGGGCTCCA CGTTCGAACC CAAGCACCAA ACCTTAATCC CGTACATATC GCGACTAAAT CATGACGTTA ATCGTGGGAC GGGCTCTTCG AGGTCTTAGA AGAAAATCTA ATAGAAGCTA GTTGTTGAGG GTCCCATGGA TATCACTACT AGTATTGAAC CCTGTCTGAA GAGTTGTTTT ACTGGGTATT CACTCATGTT TGTCGACGTT TTACAACAAC TAGTAATCTA GAAACTACTA CGATTAAGGA TGCTTTTAAT TTATATTTTG CCCATGGAAA TTGACAAACT GTAAGGGGAG ATATGAGGGC TTTCATCCAT CTGTTCCCAT TGACTGATAG CGGAAAGAAG TCTTGTGACT GGAGATTCTT CTCGATGGTA GGGTTGCGAT GGATCCGTTC TCCTTGATGA CACGGCCAGC TTCACGGGAG AGAAGACGGC AGGACCCAAC GACCGGTCCT TGCGAGGCTT CGACGTGGTC GACTCCATTA AGTCCCAGGT GGAGAGCGTC TGCCCTCAAG TCGTCTCCTG TGCCGACATC CTCGCAGTCG CAGCTCGGGA TTCAGTCGTC GCGGTAAGGA ACCGCCATTT ATCTTCCTCC GTAAGAAGAA CCCCAAAACT AAGTTTTGAT TGGGAATCTT GTACTTCCTT TGGGAGCGCA GCTGGGGGGC CCTTCGTGGA CAGTGAAGCT GGGAAGAAGA GACTCAACGA CGGCCAGCCT GAGCAACGCC AACAACGACC TTCCTGGGCC GACATCGGAC CTCAGTACCC TCATATCTGC CTTCGCCAAG AAGGGTCTCT CATCGAGCGA TATGGTCGCC TTATCAGGTA CAAAACTCTC TCATTCCGGG ACTCGATCCG TTAGCACGTC CATGTCAGGG AATCAGATCA TTGAAATAGA AGTCAATTGG TGATAAGTAG ATCAGATAAT CTATTTTCAA AATAAAATAG AATCCCCTCG GTGAGTGTGA AGTATTTCCA CACGTGAGCA ATTTGACTTT AGATGGTTGC CATGTAGACA ACATAGAAAT GTCATTTTAT CTAAAACTAA GTTTTGAGGA GTCGGATCAT TAACTCTTAA TCGATTGATG ATAAGCAGAG TGAACTCGTG CACGTAATTC AAATATCCCC GCTCACATTT TAGTTGAGTT TTTAAATGAG TTCCATATGC GTTGAATGCC GACGGGATGC ATCATCTATG ATAAAAACCA GAATCTTGAT ACCATGGATT TGATTCCACT CAAAAGAAAT TGGAATTATA ATCATTGGCC CTTATATTTT AACCGAAAGT TTAGCTATCT TATTCAATGT GGAAGACTAT TCGAACGGCA TGTCCTAATC GCGTTTGCCT ATGTTGGATT CCGAAGGATC ACACACCATT GGACAGGCAA GGTGCACGAC GTTTCGCAGT AGAGTGTATA ACGACAGCAA CATCAACTCT TCATTTGCGA CATCAAAGCA GTCCAGCTGC CCCAGATCTG GTAGCGACGA CCAGCTTTCA CCCCTCGACA CCTCGACACC TTCCTTCTTT GACGGCTGTT ACTACAAGAA CTTAGTAGGC AACAAGGGTC TTCTCCACTC GGACCAGGAG CTCTTCAATG GGGGTTCTAC GGATTCCCAG GTTAGCAACT ACGCCAAGAA TCCAACGAAG TTCTTCACCG ACTTCGCGAC GGCTATGGTG AAGATGGGGA GCATCAGCCC TCTCCTGTCT CCGAGCGGGG AAGTCAGAGT
CAACTGTAGG AAGACAAACT GA

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTTCCGTCACTGGCGTCCGTGGTAACCTTGAGTTATGCTTCCTCTTCTTCGTCTTCTTCCTCTCCCTAGCCTCAGGTCAACTGTCTTCAACTTACTACGACTCCTCCTGCCCCAAG
GCCCTTTCTACGATCCGATCTGCAGTCAGAGATGCAGTGGCCAAGGAACGCCGCATGGGGGCCTCACTGCTTCGCCTCCACTTCCACGACTGCTTTGTGAATGTAGGTCCTCTCCTAGAG
AAGTCTCTGGTATTAATATTAGAGTGTATCATCGAGCTCATAGCATGCTATCGTAACAGAGACAACACAGAAAGCCTACCCGTTCCTCTCCCTTCCCCTTCTTCCCTTTTCAGGGCTCCA
CGTTCGAACCCAAGCACCAAACCTTAATCCCGTACATATCGCGACTAAATCATGACGTTAATCGTGGGACGGGCTCTTCGAGGTCTTAGAAGAAAATCTAATAGAAGCTAGTTGTTGAGG
GTCCCATGGATATCACTACTAGTATTGAACCCTGTCTGAAGAGTTGTTTTACTGGGTATTCACTCATGTTTGTCGACGTTTTACAACAACTAGTAATCTAGAAACTACTACGATTAAGGA
TGCTTTTAATTTATATTTTGCCCATGGAAATTGACAAACTGTAAGGGGAGATATGAGGGCTTTCATCCATCTGTTCCCATTGACTGATAGCGGAAAGAAGTCTTGTGACTGGAGATTCTT
CTCGATGGTAGGGGGTTGCGATGGATCCGTTCTCCTTGATGACACGGCCAGCTTCACGGGAGAGAAGACGGCAGGACCCAACGACCGGTCCTTGCGAGGCTTCGACGTGGTCGACTCCAT
TAAGTCCCAGGTGGAGAGCGTCTGCCCTCAAGTCGTCTCCTGTGCCGACATCCTCGCAGTCGCAGCTCGGGATTCAGTCGTCGCGGTAAGGAACCGCCATTTATCTTCCTCCGTAAGAAG
AACCCCAAAACTAAGTTTTGATTGGGAATCTTGTACTTCCTTTGGGAGCGCAGCTCTGGGGGGCCCTTCGTGGACAGTGAAGCTGGGAAGAAGAGACTCAACGACGGCCAGCCTGAGCAA
CGCCAACAACGACCTTCCTGGGCCGACATCGGACCTCAGTACCCTCATATCTGCCTTCGCCAAGAAGGGTCTCTCATCGAGCGATATGGTCGCCTTATCAGGTACAAAACTCTCTCATTC
CGGGACTCGATCCGTTAGCACGTCCATGTCAGGGAATCAGATCATTGAAATAGAAGTCAATTGGTGATAAGTAGATCAGATAATCTATTTTCAAAATAAAATAGAATCCCCTCGGTGAGT
GTGAAGTATTTCCACACGTGAGCAATTTGACTTTAGATGGTTGCCATGTAGACAACATAGAAATGTCATTTTATCTAAAACTAAGTTTTGAGGAGTCGGATCATTAACTCTTAATCGATT
GATGATAAGCAGAGTGAACTCGTGCACGTAATTCAAATATCCCCGCTCACATTTTAGTTGAGTTTTTAAATGAGTTCCATATGCGTTGAATGCCGACGGGATGCATCATCTATGATAAAA
ACCAGAATCTTGATACCATGGATTTGATTCCACTCAAAAGAAATTGGAATTATAATCATTGGCCCTTATATTTTAACCGAAAGTTTAGCTATCTTATTCAATGTGGAAGACTATTCGAAC
GGCATGTCCTAATCGCGTTTGCCTATGTTGGATTCCGAAGGAGATCACACACCATTGGACAGGCAAGGTGCACGACGTTTCGCAGTAGAGTGTATAACGACAGCAACATCAACTCTTCAT
TTGCGACATCAAAGCAGTCCAGCTGCCCCAGATCTGGTAGCGACGACCAGCTTTCACCCCTCGACACCTCGACACCTTCCTTCTTTGACGGCTGTTACTACAAGAACTTAGTAGGCAACA
AGGGTCTTCTCCACTCGGACCAGGAGCTCTTCAATGGGGGTTCTACGGATTCCCAGGTTAGCAACTACGCCAAGAATCCAACGAAGTTCTTCACCGACTTCGCGACGGCTATGGTGAAGA
TGGGGAGCATCAGCCCTCTCCTGTCTCCGAGCGGGGAAGTCAGAGTCAACTGTAGGAAGACAAACTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA