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Entry information : SpolPrxQ01 ( Spipo20G0009000)
Entry ID 13249
Creation 2015-06-19 (Christophe Dunand)
Last sequence changes 2015-06-19 (Christophe Dunand)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2016-02-24 (Catherine Mathe)
Peroxidase information: SpolPrxQ01 ( Spipo20G0009000)
Name (synonym) SpolPrxQ01 ( Spipo20G0009000)
Class Atypical 2-Cysteine peroxiredoxin (type Q)    [Orthogroup: PrxQ001]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela
Organism Spirodela polyrhiza (great duckweed)    [TaxId: 29656 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SpolPrxQ01
start..stop		 S start..stop
VvPrxQ 309 3.04e-108 3..218 2..217
PtPrxQ01 306 4.09e-107 3..218 2..213
PbPrxQ01 305 5.39e-107 3..218 2..214
AdePrxQ 301 2.22e-105 1..214 2..210
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 804331..804540 208 N° 2 804092..804229 136 N° 3 803910..803999 88 N° 4 803594..803812 217
complement(join(803594..803812,803910..803999,804092..804229,804331..804540))


exon

Literature and cross-references SpolPrxQ01 ( Spipo20G0009000)
DNA ref. Phytozome 12:   pseudo20 (804540..803594)
Cluster/Prediction ref. Phytozome Gene 12:   31509692
Protein sequence: SpolPrxQ01 ( Spipo20G0009000)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   218
PWM (Da):   %s   23543.31  
PI (pH):   %s   10.15
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASSTALPRHTLLLLHASSPKAPAAGRAQIPVLSRSSHSQIFGLRFSSAAGPSCSPPPAAAAARPVVSAKVSKGDVPPSFTLKNQDGKNVSLSTYKGKPLVLYFYPADETPGCTKEACAF
RDSYEKFKKAGAEVIGISADDPSSHKAFAKKYRLPFTLLSDEGNRVRKDWGVPSDLFGTLPGRQTYVIDRKGVVQLVYNNQFQPEKHVDETLKLLQTL*

Retrieve as FASTA  
Remarks Complete sequence from genomic.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGTCCTCCACCGCCCTTCCCCGCCACACCCTCCTCCTCCTCCACGCGTCGTCCCCTAAAGCCCCCGCCGCCGGCCGGGCCCAGATCCCCGTCCTCTCCAGGTCCTCCCACTCCCAG
ATCTTCGGGCTGAGGTTCTCCAGCGCCGCCGGCCCCTCCTGCTCCCCTCCGCCGGCCGCCGCCGCCGCCAGGCCCGTCGTCTCCGCCAAGGTACTGCTCCGTCCTCCCCAAACCGGCGGC
CCTCTGCGCAATGCGCCACCACCAGCGGCTCTAATCCCTCTGTGAAACAAAACAAATCTCCGCCCCCCCAGGTGTTTCCAAAGGCGACGTGCCGCCGTCGTTCACCTTGAAGAACCAGGA
CGGCAAGAACGTGAGCCTCTCCACCTACAAGGGGAAGCCGCTGGTGCTCTACTTCTACCCCGCCGACGAGACCCCCGGCTGCACCAAAGAGGTAGGCTTGAAGATCTCCGCCATATCCCT
TCTGAAGGACTGACTGACCCATGACCCATGACCCATTCTCCGGCGACCCCTCCTCTTTCCCAGGCGCCTGCGCCTTCAGGGACTCCTACGAGAAGTTCAAGAAGGCCGGAGCGGAGGTGA
TAGGGATCAGCGCCGACGACCCATCCTCCCACAAGGTGCGCTCCCCTTCCCCCTTCCCCTTCCTCGTCGTCCTCTCCGATCGTCCCCCGGATTGACCTCTCGTCGCGTTCTGGCTTCCGC
CATGGATGGCAGGCGCCTTCGCGAAGAAGTACCGGCTGCCGTTCACCCTGCTGAGCGACGAGGGGAACCGGGTGAGGAAGGACTGGGGGGTCCCCTCGGACCTCTTCGGAACCCTCCCCG
GCCGGCAGACCTACGTCATCGACCGCAAGGGCGTGGTGCAGCTCGTCTACAACAACCAGTTCCAGCCGGAGAAGCACGTTGACGAGACTCTCAAGCTTCTCCAGACCCTCTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGTCCTCCACCGCCCTTCCCCGCCACACCCTCCTCCTCCTCCACGCGTCGTCCCCTAAAGCCCCCGCCGCCGGCCGGGCCCAGATCCCCGTCCTCTCCAGGTCCTCCCACTCCCAG
ATCTTCGGGCTGAGGTTCTCCAGCGCCGCCGGCCCCTCCTGCTCCCCTCCGCCGGCCGCCGCCGCCGCCAGGCCCGTCGTCTCCGCCAAGGTTTCCAAAGGCGACGTGCCGCCGTCGTTC
ACCTTGAAGAACCAGGACGGCAAGAACGTGAGCCTCTCCACCTACAAGGGGAAGCCGCTGGTGCTCTACTTCTACCCCGCCGACGAGACCCCCGGCTGCACCAAAGAGGCCTGCGCCTTC
AGGGACTCCTACGAGAAGTTCAAGAAGGCCGGAGCGGAGGTGATAGGGATCAGCGCCGACGACCCATCCTCCCACAAGGCCTTCGCGAAGAAGTACCGGCTGCCGTTCACCCTGCTGAGC
GACGAGGGGAACCGGGTGAGGAAGGACTGGGGGGTCCCCTCGGACCTCTTCGGAACCCTCCCCGGCCGGCAGACCTACGTCATCGACCGCAAGGGCGTGGTGCAGCTCGTCTACAACAAC
CAGTTCCAGCCGGAGAAGCACGTTGACGAGACTCTCAAGCTTCTCCAGACCCTCTGA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGTCCT CCACCGCCCT TCCCCGCCAC ACCCTCCTCC TCCTCCACGC GTCGTCCCCT AAAGCCCCCG CCGCCGGCCG GGCCCAGATC CCCGTCCTCT CCAGGTCCTC CCACTCCCAG  ATCTTCGGGC TGAGGTTCTC CAGCGCCGCC GGCCCCTCCT GCTCCCCTCC GCCGGCCGCC GCCGCCGCCA GGCCCGTCGT CTCCGCCAAG GTTTCCAAAG GCGACGTGCC GCCGTCGTTC  ACCTTGAAGA ACCAGGACGG CAAGAACGTG AGCCTCTCCA CCTACAAGGG GAAGCCGCTG GTGCTCTACT TCTACCCCGC CGACGAGACC CCCGGCTGCA CCAAAGAGGC CTGCGCCTTC  AGGGACTCCT ACGAGAAGTT CAAGAAGGCC GGAGCGGAGG TGATAGGGAT CAGCGCCGAC GACCCATCCT CCCACAAGGC CTTCGCGAAG AAGTACCGGC TGCCGTTCAC CCTGCTGAGC  GACGAGGGGA ACCGGGTGAG GAAGGACTGG GGGGTCCCCT CGGACCTCTT CGGAACCCTC CCCGGCCGGC AGACCTACGT CATCGACCGC AAGGGCGTGG TGCAGCTCGT CTACAACAAC 
CAGTTCCAGC CGGAGAAGCA CGTTGACGAG ACTCTCAAGC TTCTCCAGAC CCTCTGA 

Retrieve as FASTA