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Entry information : CagraAPx[P]03 (Cagra.1533s0008)
Entry ID 14896
Creation 2018-03-01 (Christophe Dunand)
Last sequence changes 2018-03-01 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2018-03-01 (Christophe Dunand)
Peroxidase information: CagraAPx[P]03 (Cagra.1533s0008)
Name (synonym) CagraAPx[P]03 (Cagra.1533s0008)
Class Ascorbate peroxidase     [Orthogroup: APx2011]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Capsella
Organism Capsella grandiflora    [TaxId: 264402 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CagraAPx[P]03
start..stop		 S start..stop
CrubAPx03-2 260 1.24e-89 1..128 164..291
AlyAPx23-2 220 7.12e-74 1..127 165..292
TsAPx03-1C 219 2.68e-73 1..128 163..289
AhalAPx06 214 1.02e-71 1..128 130..258
Literature and cross-references CagraAPx[P]03 (Cagra.1533s0008)
Protein sequence: CagraAPx[P]03 (Cagra.1533s0008)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   127 (256)
PWM (Da):   %s   14336.36 (27832.8) Transmb domain:   %s   o98-120i
PI (pH):   %s   4.99 (8.05) Peptide Signal:   %s   cut: 19 range:19-274
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GRAHPERSGF DGPWTQDPLK FDNSYFVELL KEEETEGLLK LSTDKTLLEV PEFRHYVELY AKDEDAFFRD YAESHKKLSE LGFTPTSSVT KVITDNSTVL AHSAVGVAVA AAVVALGYFY 
EIRKRIK* 

Retrieve as FASTA  
Remarks Partial sequence from genomic. 5'end is missing due to scaffold border.
DNA ►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGAAGGGCTC ATCCAGAGAG ATCTGGTTTT GATGGACCAT GGACTCAAGA TCCTCTAAAG TTTGATAACT CATACTTTGT GTAAGATCCT CTGACAGATT TTGTTTGGTT GGAGAGACAA  CAACTAGTTG TTTTGTTCAC TGATGTTTAA ACCATGGTCA CTGTTGGCAC TACAGGGAAT TGCTGAAAGA AGAAGAGACA GAGGGCTTGC TAAAACTTTC AACGGACAAG ACATTGTTGG  AAGTCCCCGA GTTTCGTCAT TACGTCGAGC TTTACGCAAA GGTATAATTA TGGGAGTCTA TCTTTACTCT GATCCAAAAA TCCGATTCAA TTATCAATTC GCGTGCAAGC TGCATCGACT  ACAAGCTAAG ATTATGATGC AGTTGCATCT TGATTTCTAA CTTTTGCCTC TCAACAGGAC GAAGATGCAT TCTTCAGAGA CTATGCAGAG TCACACAAGA AACTCTCAGA GCTAGGGTTC  ACACCAACAT CTTCAGTCAC TAAGGTGATA ACAGACAACA GCACGGTGCT GGCACATAGT GCAGTCGGGG TTGCAGTCGC TGCTGCTGTG GTGGCCTTAG GCTACTTCTA CGAGATTCGC  AAAAGGATCA AGTAAATAAA ATAGAAAGAA GAAACGATTC TCCTTCTTAT ATCTCTGCAT TATCGTTTAA TTTTCTTATG GTAAAACTTT TTAATCCTTA ATTTTCTTAT TAACAGCAAA 
ACATTTTTTA CAAATTCAAA AATTGGTACA AC 

Retrieve as FASTA  
CDS►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGAAGGGCTC ATCCAGAGAG ATCTGGTTTT GATGGACCAT GGACTCAAGA TCCTCTAAAG TTTGATAACT CATACTTTGT GGAATTGCTG AAAGAAGAAG AGACAGAGGG CTTGCTAAAA  CTTTCAACGG ACAAGACATT GTTGGAAGTC CCCGAGTTTC GTCATTACGT CGAGCTTTAC GCAAAGGACG AAGATGCATT CTTCAGAGAC TATGCAGAGT CACACAAGAA ACTCTCAGAG  CTAGGGTTCA CACCAACATC TTCAGTCACT AAGGTGATAA CAGACAACAG CACGGTGCTG GCACATAGTG CAGTCGGGGT TGCAGTCGCT GCTGCTGTGG TGGCCTTAGG CTACTTCTAC 
GAGATTCGCA AAAGGATCAA GTAA 

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGAAGGGCTC ATCCAGAGAG ATCTGGTTTT GATGGACCAT GGACTCAAGA TCCTCTAAAG TTTGATAACT CATACTTTGT GGAATTGCTG AAAGAAGAAG AGACAGAGGG CTTGCTAAAA  CTTTCAACGG ACAAGACATT GTTGGAAGTC CCCGAGTTTC GTCATTACGT CGAGCTTTAC GCAAAGGACG AAGATGCATT CTTCAGAGAC TATGCAGAGT CACACAAGAA ACTCTCAGAG  CTAGGGTTCA CACCAACATC TTCAGTCACT AAGGTGATAA CAGACAACAG CACGGTGCTG GCACATAGTG CAGTCGGGGT TGCAGTCGCT GCTGCTGTGG TGGCCTTAGG CTACTTCTAC  GAGATTCGCA AAAGGATCAA GTAAATAAAA TAGAAAGAAG AAACGATTCT CCTTCTTATA TCTCTGCATT ATCGTTTAAT TTTCTTATGG TAAAACTTTT TAATCCTTAA TTTTCTTATT 
AACAGCAAAA CATTTTTTAC AAATTCAAAA ATTGGTACAA C 

Retrieve as FASTA