Sequence Properties
first value : protein
second value (mature protein) |
Length (aa):  |
232 (208) |
| PWM (Da): |
25478.77 (22925.5) |
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| PI (pH): |
6.66 (6.36) |
Peptide Signal: |
cut: 25 range:25-232 |
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Sequence
Send to BLAST
Send to Peroxiscan
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| *.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MTRGRGAIFL AFVLAFCMAS PLEADFKVGF YEDTSPKAEL IVRKEVEKAF KEDNGIVADF VRMHFHDCFV RGCDGSILLD STPGNTAEKD SPINSPSLER FDAIDNFKSR VEATCKGVVS
CADIIAFAAR DSVKLSKGIY YDLPSGRRDR RLSFSSETFT DLPPPSDNLH QLTHKFARKG LSQKDLVTLS GAHSIGKADC TSFSDRLYNF SATEKTDPSL DPAYAAQLKQ KC
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Retrieve as FASTA
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| Remarks |
Incorrect prediction from Lemna.org. Large end of last exon is missing and not found downstream |
Promoter►
Send to BLAST
Send to cis Analysis
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Terminator +►
Send to BLAST
Send to cis Analysis
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
AGGACTTGTT TCAGCCGCTT GGAGACTCGC CGGAAGTCAC GCCGTCGGTG GTCGTCTCCG GCAAGATCCC GATCAGGGGT TTTTTTTCCT TTCTTGGCAG TTGACGTTTT GTTTTCAGGT
TAATCTCAGC CGTTCATCGC AAGGAGTTAT AACGGCGCAG GATGCGCCAC AGAGGATGTG AGCCAGCTGG ACGAGGAGTT AGTTACGACC ACTTCTCTCT CCAGCTGTCA TTGGCCAGCC
CTATATAAGG GCATGGTGTT CGACGAAATA ACCGTGTGGA TTCCGTTTTT CTTGAATTGA TTGTTCTCTT TGCCATTCTC TCGATTCTTG ATCTTCTTGA AGTAGTTACA GTCGTGAGGG
ATCCAACAAG TGGTATCAGA GCCGATACCG ATTGAAGGGA GAAGGTATGG CAAAGAAAGC TGGAGAAGCT AGCACCTCCG GTGAGCGCGG AGGAGAGATG ATAGCGGCGC CTCCATCTCT
GAAGCTTTCC AGGACGAATT ACCACATTTG GGCGATGAGC ATGCAGGTAT ATCTTGATTC TCATGAATTG CGGAAGGCGA TTGTAGGAGA CAATGTGCCA AAGAAGAAGG ACAGATTGGC
CTTGTCTGCA ATCATCAGTT CAGTTCCGGA AGACATACTA TCTGTACTGG ACGCCGACAA GACTGCTAAA CAGAACTGGG AGATTCTGAA GTAGCGGAAT CTTGGCGTGG AGCGCGTCAT
CCAGTCAAGA GTTCAAGGCC TCAAACGTGA ATTTGAGAAT CTTGTTATGA ACAAGACAGA TTCAGTGGTG GATTTCGGGA TGAAGTTCAC ACAACTCCTC TCCGAATTAA GAAAGTTGGG
AGAGAAATTG CTAGAGCCGG AAGTTGTGCG TCGATTTCTT AGGGCAACTC CTTCGAAATT TGATGCCATT ACCTTTTCCT TGGAGCAATA CGGTGATTTG GATAAGGTAA GTCTTGATGA
AGTCATAGGC TCGCTCACGG TTCACGAACT CAGACTTAAG GATCGAGAGA CTCGTGAGGA GGAGCAAGCC TTACTGGCTA AGGCATTGAG TAAAAGTAAA GTAACTGCTG ATGAAGGATC
TTCGACACGA GGAAGAGGCC GTGGTCGAGG ACGTGGCAGA GGCCATGGTA GAGGAAGAGG CCGTGGACGC AATTCTACTT CAGACGAAGA GAAAGAGAAG AAGCCTTTCG ACAAGTCCCA
AATCCAGTGT TATAACTGCC AGAAATTTGG GCATTTTGCA TCTGAGTGCA GGAATTCCAA GAAAGAACGG GAAGATCGTG CATATGTAGC TGATGCAGCT CCATCTTTAA GTGCTCCTGT
CAATCCTCCG GCTCCTCCTG GATCATCTTC TACGCTTCTA ATGGCAATTG AAGAAAGTTG TACCGAGTAT CTGCTCCAAG GTTCGATTTC TCCTGATCTT AGTCCTGAAT TATGGTATCT
TGATACAGGG GCTACAAGTC ATATGACTGG TCGCCAAAGT TATTTCACAT ACCTGGATGA ATCTGAGAAC GGTTTTGTGA AATTCGGTGA TAATTCTCGA GTACAGATCC ATGGAAGAGG
CAATGTGAAG GTTTTCAGTC AAGATGGACA GAAAATTGAC TTCGAAGAGG TACTATATGT ACCAAAATTG TGTGCAAATA TTCTCAGCCT AGGCAGATTG GATGAACAGG GCAGTAAAAT
GGTTATGCAC AATGGGAGGC TCACAATTTA TGATCGAAAT GGGGGACTTC TAGCTAAGGT TCACCGAACA GAAGGACGGC TTTATCTACT TAAACTCAAG GTTGTAGAAG GCTGTCTACT
TACCAAGGTT GATGATGATT CAAGCCGACT GTGGCACCTG AGGTTTGGTC ACATTAACTA TCATTTTTTG AAGGAAATGG CGCGTGGAGA AATTGTGGAT GGACTTCCAC AGATCAGGGT
TCCTGATCAT GTCTGTCAGA GTTGTCTGGC AGGTAAGCAA TCTCGTACTC CATTCCCTAG ATCAGCTAGT CACAGAGCAG
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Retrieve as FASTA
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DNA ►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGACTCGGG GCCGGGGAGC GATCTTCTTG GCTTTCGTGC TTGCGTTCTG CATGGCTTCT CCCCTGGAAG CTGATTTTAA AGTGGGATTT TACGAGGATA CTTCCCCAAA GGCTGAGCTG
ATCGTGAGGA AGGAAGTCGA GAAAGCTTTC AAAGAAGACA ACGGCATCGT GGCGGATTTC GTGCGCATGC ATTTCCATGA TTGCTTCGTG AGGGTAAACA TGTCTCCAGA CCTCGTAAAT
AGTTCAATAT TCCGGAACAT CGCACTTGAA TAATATGCTC TATTTTTAGG GTTGTGATGG ATCAATCCTC CTGGACTCTA CGCCGGGTAA CACCGCAGAG AAGGACTCGC CCATCAACAG
CCCTAGTCTG GAACGCTTTG ACGCCATTGA TAACTTTAAA AGCAGAGTCG AAGCCACCTG CAAAGGCGTA GTCTCGTGCG CCGATATCAT TGCATTCGCG GCCAGAGACA GTGTCAAACT
GGTATGTCCT CTGTCCTGGA AATCAAATAC TGTGTACTAG TTTTTATTCA TATAAACTCA GCCTATCAAT CTATGGATGT CTCACTTTCT CTTCCTCCCG ATCGGCAGAG CAAAGGTATC
TACTATGACT TGCCTTCCGG AAGACGGGAC AGAAGATTGT CCTTCAGCTC AGAGACATTC ACGGACTTGC CTCCGCCGTC AGATAATCTT CATCAGCTCA CACACAAGTT CGCCAGGAAG
GGCCTGTCAC AAAAGGATTT AGTCACCCTC TCCGGTGAGT ATATACGATA TATTTTAAAA GGCTCCGCCC GAGCGTAACT CTAATATAAG TCATCTTACT TCATGTGGGT GTACAACAGG
TGCTCATTCC ATCGGCAAAG CTGACTGCAC CTCGTTCAGC GACCGGCTCT ACAACTTCAG TGCCACGGAG AAGACAGACC CGAGCCTGGA TCCGGCGTAC GCCGCTCAGC TGAAACAGAA
GTGTTGA
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Retrieve as FASTA
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CDS►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGACTCGGG GCCGGGGAGC GATCTTCTTG GCTTTCGTGC TTGCGTTCTG CATGGCTTCT CCCCTGGAAG CTGATTTTAA AGTGGGATTT TACGAGGATA CTTCCCCAAA GGCTGAGCTG
ATCGTGAGGA AGGAAGTCGA GAAAGCTTTC AAAGAAGACA ACGGCATCGT GGCGGATTTC GTGCGCATGC ATTTCCATGA TTGCTTCGTG AGGGGTTGTG ATGGATCAAT CCTCCTGGAC
TCTACGCCGG GTAACACCGC AGAGAAGGAC TCGCCCATCA ACAGCCCTAG TCTGGAACGC TTTGACGCCA TTGATAACTT TAAAAGCAGA GTCGAAGCCA CCTGCAAAGG CGTAGTCTCG
TGCGCCGATA TCATTGCATT CGCGGCCAGA GACAGTGTCA AACTGAGCAA AGGTATCTAC TATGACTTGC CTTCCGGAAG ACGGGACAGA AGATTGTCCT TCAGCTCAGA GACATTCACG
GACTTGCCTC CGCCGTCAGA TAATCTTCAT CAGCTCACAC ACAAGTTCGC CAGGAAGGGC CTGTCACAAA AGGATTTAGT CACCCTCTCC GGTGCTCATT CCATCGGCAA AGCTGACTGC
ACCTCGTTCA GCGACCGGCT CTACAACTTC AGTGCCACGG AGAAGACAGA CCCGAGCCTG GATCCGGCGT ACGCCGCTCA GCTGAAACAG AAGTGTTGA
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Retrieve as FASTA
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