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Entry information : LjAPx-R
Entry ID 2984
Creation 2007-04-13 (Christophe Dunand)
Last sequence changes 2010-08-06 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2010-08-06 (Christophe Dunand)
Peroxidase information: LjAPx-R
Name LjAPx-R
Class Ascorbate peroxidase related     [Orthogroup: APx-R001]*
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Lotus
Organism Lotus japonicus (corniculatus var japonicus)    [TaxId: 34305 ]
Cellular localisation N/D
Tissue types Flower buds
Flowers
Pods
Roots
Young plants
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LjAPx-R
start..stop		 S start..stop
GmAPx-R 496 5.21e-179 8..317 9..319
MtAPx-R 494 2.11e-178 12..317 11..320
PtAPx-R 429 4.02e-152 19..317 27..337
VvAPx-R 417 1.21e-147 22..317 25..330
Literature and cross-references LjAPx-R
Literature Asamizu,E., Nakamura,Y., Sato,S. and Tabata,S. Generation of 7137 non-redundant expressed sequence tags from a legume, Lotus japonicus. DNA Res. 7 (2), 127-130 (2000)
EST ref. GenBank:   BP040827 [3' end]
Cluster/Prediction ref. UniGene:   Lja.6464
Protein sequence: LjAPx-R
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   317
PWM (Da):   %s   34168.6  
PI (pH):   %s   8.31
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
SSLSNTPLHS SIATASAAET NFPAKFQRPT AKFRPDKPND RASSDVAVSS SRRGFIRIAT LPCLLPLTQI IGVQQANAIQ PDTKEYLFIK EEVRKVLSKG KAAGVLRLVF HDAGTFETAE  KTGGMNGSVL YELERPENAG LKKSIKVLQK AKTQIDAIQP VSWADLIAVA GAEAVEVCGV PAIQVSLGRQ DSLGPDPEGK LPEESLNASG LKKCFHRKGF TTQELVALSG AHTIGSKGFG 
GPTSFDNSYY KVLLEKPWAS SGGMTSMIGL PSDHALVEDD ECLRWIAKYA ENENMFFEDF KNAYVKLVNS GVRWNSL 

Retrieve as FASTA  
Remarks Partial sequence from 8 ESTs. 5' is missing (no ATG). No genomic. Strain="Miyakojima MG-20".
cDNA►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TTCAAGTCTC TCTAACACTC CTCTTCACTC CTCAATCGCC ACCGCTTCAG CCGCCGAAAC CAATTTTCCC GCCAAATTCC AACGGCCAAC GGCCAAGTTC CGCCCCGACA AGCCCAACGA  CCGTGCTTCT TCAGATGTCG CAGTTTCAAG CAGCAGAAGA GGGTTTATAC GCATAGCCAC GTTGCCATGT CTTCTTCCCC TGACTCAGAT CATTGGTGTT CAACAAGCCA ACGCGATTCA  GCCTGATACA AAGGAATATC TTCTCATTAA AGAAGAGGTC AGGAAGGTTT TGTCGAAGGG AAAGGCGGCA GGCGTGCTTC GGTTGGTTTT CCATGATGCT GGAACCTTTG AAACTGCTGA  AAAAACAGGT GGTATGAATG GTTCTGTACT CTATGAACTT GAAAGACCTG AAAATGCTGG GCTGAAAAAA TCAATAAAGG TTCTGCAGAA GGCAAAGACT CAGATAGATG CTATCCAACC  AGTATCCTGG GCGGACTTGA TTGCTGTGGC TGGAGCTGAA GCAGTTGAAG TATGTGGAGG TCCAGCTATC CAAGTTTCAC TGGGCAGACA AGATTCGCTG GGACCTGATC CTGAAGGGAA  ACTTCCTGAG GAATCTCTCA ATGCTTCTGG TTTGAAGAAA TGCTTTCATA GAAAAGGATT TACAACGCAA GAACTGGTAG CTTTGTCTGG AGCCCATACT ATTGGAAGTA AAGGTTTTGG  AGGCCCTACT TCTTTTGACA ATTCGTATTA TAAGGTTCTT TTGGAGAAGC CATGGGCGTC TTCAGGTGGT ATGACAAGTA TGATTGGCCT TCCTTCAGAT CACGCTCTTG TTGAGGATGA  TGAATGCTTA AGATGGATTG CAAAATATGC AGAAAATGAG AATATGTTCT TTGAAGATTT CAAAAATGCA TATGTAAAGC TGGTGAATTC TGGCGTGAGA TGGAATAGCT TATAGTATAT  TCATGAGTTG GATGTTCCAA ACTTCCAATA TAGGGGCAGC TTGTTTTCTA TTGATTTGCT GCTAGTGTAT GTGAACATTT GCCATGAATT TTTGGGACCA GGATTAATAT TTTGTATATC 
AACATCTCCT ATTTCTGGTT ACTAAAATAT TCATGTCCTT ACTAAAATAT ATTCATTTTA ATTCTTGTGG CGCTATTAAC TCATAAACAT GCCCATATCC TGCGAGAG 

Retrieve as FASTA