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Entry information : SbAPx01 (Sobic.001G410200.1 [2.1] / Sb01g038760 [1.4])
Entry ID 3502
Creation 2006-08-23 (Felipe Teixeira)
Last sequence changes 2006-08-23 (Felipe Teixeira)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbAPx01 (Sobic.001G410200.1 [2.1] / Sb01g038760 [1.4])
Name (synonym) SbAPx01 (Sobic.001G410200.1 [2.1] / Sb01g038760 [1.4])
Class Ascorbate peroxidase    [Orthogroup: APx2001]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation Cytosolic
Tissue types Callus
Flowers
Inflorescences
Leaves
Roots
Seedlings
Seeds
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbAPx01
start..stop		 S start..stop
ZmAPx05 494 1.72e-180 1..250 1..250
ZmAPx01 493 5.05e-180 1..250 1..250
SiAPx01 491 4.3e-179 1..250 1..250
PamAPx01 484 1.57e-176 1..250 1..250
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 62243186..62243304 117 N° 2 62242894..62243068 173 N° 3 62242728..62242793 64 N° 4 62241394..62241442 47
N° 5 62241165..62241250 84 N° 6 62240996..62241075 78 N° 7 62240736..62240838 101 N° 8 62240604..62240662 57
N° 9 62240513..62240528 14  
complement(join(62240513..62240528,62240604..62240662,62240736..62240838,6224099 6..62241075,62241165..62241250,62241394..62241442,62242728..62242793,62242894..6 2243068,62243186..62243304))


exon

Literature and cross-references SbAPx01 (Sobic.001G410200.1 [2.1] / Sb01g038760 [1.4])
DNA ref. Phytozome 12:   chromosome_1 (62243304..62240513)
Cluster/Prediction ref. UniGene:   Sbi.3729
Protein sequence: SbAPx01 (Sobic.001G410200.1 [2.1] / Sb01g038760 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   250 (253)
PWM (Da):   %s   27128.77 (27539.8) Transmb domain:   %s   i7-24o
PI (pH):   %s   5.91 (5.15) Peptide Signal:   %s   cut: 17 range:17-269
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAKSYPTVSAEYSEAVEKARQKLRALIAEKSCAPLMLRLAWHSAGTFDVSSRTGGPFGTMKNPAELAHGANAGLDIAVRLLEPIKEEFPILSYADFYLAGVVAVEVTGGPQIPFHPGREDKPQPPPEGRLPDATKGSDHLRQVFGKQMGLSDQDIVALS
GGHTGRCHKERSGFEGAWTSNPLVFDNSYFKELLSGDKEGLLQLPSDKALLSDPAFRPLVDKYADEKAFFEDYKEAHLKLSELGFADA

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, 8 introns) and 77 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGAAGAGCTACCCGACCGTGAGCGCCGAGTACAGCGAGGCCGTCGAGAAGGCCAGGCAAAAGCTCCGCGCCCTCATCGCCGAGAAGAGCTGCGCCCCACTCATGCTCCGCCTCGCG
TAAGCCTCCCTACCTCCACCTACCTCCCGTCCTCCCTGCGCGCGCATTTCTAGATCTTTGTGGGGGAGTTTTTTTTTTTCAGTCGCCTGATCTGGGTTTCCCGTTCGATCGCGCAGGTGT
GGCACTCCGCCGGGACGTTCGACGTGTCGTCGAGGACCGGCGGTCCCTTCGGCACGATGAAGAACCCGGCGGAACTGGCGCATGGCGCCAACGCGGGGCTGGACATCGCGGTGCGGCTGC
TCGAGCCCATCAAGGAGGAGTTCCCCATCCTCTCTTACGCCGATTTCTACCAGGTCGGTCCCCGATCTCGCATCGATCTGGTTCGATGATTCGATCTGCCCGAATGGATGTGCGTTCTGA
CCGCGTACCTTTCTCTCTCTGCTCCTTTTGCAGCTCTCGCGGGAGTTGTGGCCGTGGAGGTCACTGGTGGGCCTCAGATCCCCTTCCACCCCGGTAGGGAGGTGAGATTTTTCAACCATT
TGTTAACTGTCTTTGGGGTTTAGCAGGGTTTAAGGTTTTGTTTAGAAATCTCCGAGGAGGTGGGTGTGAAGGTCGTTTAGTGAGATCGTGTTTGTTTACTCCAACTAGTACCATCGATCT
ATGTGCGATTTATCACCTGTTTGGTAAATCCCTCGTGCAATTAGCTATAACCATTTATTCCTGGGATGCTACAATTAACCTTTATTTTGAGATTTGTGTCCACGCATCTTTCCGCTCTGT
GGCTCTGTCCCTGTGTGTTCATTGTTTCGGCTTGAAGTGGCCACTAGTTTAGGTTTTGATTAGTCTATAAATATCATCTTCGAATGGTGGGCCATTGTGCGCTAAAAATAATTTAGCGGT
TTACTGTAGTGTTCGTCAAATATATGAGATGCAGCTTTCACTATGTGTATAGCTCAGTCCTTGTCTCTCATAGACGTGATAGGAGAGTCATATTAACTATATGCTTGTTTCATACTTTTT
CCTATGATGAGAAAATGATGTCACTAATAACTTATCAAAACTTATGTTTAGAAGCTATTCCTAACACCAGTGGTTCTTTTGTGTTAGTTTTGTATAGGACAATGTCCATATAGCCTTCAT
TTTTGAAAACTTATCGAAAAAATAATTGATCGTTTTATCATTTTGTATTGGTGTTCTCCATACATACTTATGTCACCCTGCCTGTTGGATTCTTGTCATCTTGCACATATATTGTGTTGA
GTAGGTAGGTCATGGTCATGTGATGAGGTATCATAGTGTTGCCAAACCAGTTTGCCCTTATCCTGTTATACATATATGTGTTGGCCAATACAATACCATATCATATGTCGTTATCTCTTT
ATTGTGGAGGTCCACTTGTTGGGTCCTTGGATGCACAGTATGTTTGTTGTAAGTGTGCGTCTAGGCATTTCATGCCGTCTAGATAGTGTTGGTTGCCTTACCCTGATGGTGATGTGCACT
ATGCATATTATGCACCTATACGGTCCCTGTTGATATGCTGTCAAATTATACATGTATAGACCATAAACTTTCTGCATGTTGTCCAATGCTGATACTATTTTCCCTTGATTGTCATTACAA
TTTGTTGGGTGACAATTATTTAACATTTGGTGTTAAAGTTGTTCAATTCTATCACTTATGTCTTGCTTTCTTAAAACTATAGCGATAGGCATGACTGACTGATATTATTTGTTCCATGCC
TTTTTCGCCGTCAGTATTTGTCACTGTAAAAACTTGAGTATTTACATCTTCCCTTGTCTTTTTCAGGAGACAAGCCTCAGCCCCCACCCGAGGGCCGTCTTCCTGATGCCACTAAGGGTA
GATCTCTAATCTTCACTACGATTGTCATGAATGCTGAATTGATTGGTTATATTCACCATGTATCCTTCAAGGCGTTGACGTCACTTTTATTGACATGATGACCGACTCTTATTCCTTGCT
TGCTGTTTTTTATTAACCAGGTGTTCTGACCACCTGAGGCAAGTCTTTGGCAAGCAGATGGGTCTGAGCGACCAGGACATTGTTGCCCTTTCTGGTGGCCACACCTTGGTTTGTTACTGC
CCACTCATGTTTCCTTCAGAAATGTATGTAATATATGTATGCTTGAACTGATTTACTTTTATTTGAGGTTTTCTTAGGGGGAAGGTGCCACAAAGAGCGGTCTGGTTTTGAGGGGGCCTG
GACTTCAAACCCTTTGGTCTTCGACAACTCTTACTTCAAGTGAGTCTGTGTCATGTTTACTATGAAAAGCAACTGCATTTAGTTAAGAAATACTAAGAATTTATTTGCCTTTGTTATGTC
TTTCCTGGGCAGCTGTAAATACTATACTATACTAGAAATTAATAGCTATCCCATATATCCTGAACTTATTCTGTAGGGGGAACTTCTGAGTGGTGACAAGGAGGGCCTTCTTCAGCTCCC
AAGTGACAAAGCCCTGCTGAGCGACCCTGCCTTCCGCCCTCTTGTGGATAAATATGCTGCGGTATGTCCGTCATTGTTTTCTAGGGTAAGGTGATCTGCAGGGAGATAAGTACTGATTAT
TGTGTGCCTTGTAGGAGATGAGAAGGCATTCTTTGAAGACTACAAAGAAGCCCACCTCAAGCTCTCCGAACTGGGGTGAGTAACCAGTGATTGCACAATTTGTGCTTGGTCAGTGGGACA
AATCTGATTGTTTACTCTCCTGGAATGCAGGTGTTCGCTGATGCTTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGAAGAGCTACCCGACCGTGAGCGCCGAGTACAGCGAGGCCGTCGAGAAGGCCAGGCAAAAGCTCCGCGCCCTCATCGCCGAGAAGAGCTGCGCCCCACTCATGCTCCGCCTCGCG
TGGCACTCCGCCGGGACGTTCGACGTGTCGTCGAGGACCGGCGGTCCCTTCGGCACGATGAAGAACCCGGCGGAACTGGCGCATGGCGCCAACGCGGGGCTGGACATCGCGGTGCGGCTG
CTCGAGCCCATCAAGGAGGAGTTCCCCATCCTCTCTTACGCCGATTTCTACCAGCTCGCGGGAGTTGTGGCCGTGGAGGTCACTGGTGGGCCTCAGATCCCCTTCCACCCCGGTAGGGAG
GACAAGCCTCAGCCCCCACCCGAGGGCCGTCTTCCTGATGCCACTAAGGGTTCTGACCACCTGAGGCAAGTCTTTGGCAAGCAGATGGGTCTGAGCGACCAGGACATTGTTGCCCTTTCT
GGTGGCCACACCTTGGGAAGGTGCCACAAAGAGCGGTCTGGTTTTGAGGGGGCCTGGACTTCAAACCCTTTGGTCTTCGACAACTCTTACTTCAAGGAACTTCTGAGTGGTGACAAGGAG
GGCCTTCTTCAGCTCCCAAGTGACAAAGCCCTGCTGAGCGACCCTGCCTTCCGCCCTCTTGTGGATAAATATGCTGCGGATGAGAAGGCATTCTTTGAAGACTACAAAGAAGCCCACCTC
AAGCTCTCCGAACTGGGGTTCGCTGATGCTTAA

Retrieve as FASTA