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Entry information : SbGPx04 (Sobic.010G067100.1 [2.1] / Sb10g005820 [1.4])
Entry ID 5746
Creation 2008-10-13 (Christophe Dunand)
Last sequence changes 2008-10-13 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-06 (Messaoudi)
Peroxidase information: SbGPx04 (Sobic.010G067100.1 [2.1] / Sb10g005820 [1.4])
Name (synonym) SbGPx04 (Sobic.010G067100.1 [2.1] / Sb10g005820 [1.4])
Class Plant glutathione peroxidase    [Orthogroup: Gpx2001]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Leaves
Seedlings
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbGPx04
start..stop		 S start..stop
TaGPx04-1A 461 3.89e-168 1..232 1..229
ZmGPx04 429 3.14e-155 1..232 1..230
OruGPx04 350 4.13e-124 5..232 15..234
OsiGPx04 342 5.87e-121 2..232 8..232
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 5288568..5288810 241 N° 2 5290232..5290308 75 N° 3 5290406..5290467 60 N° 4 5291280..5291398 117
N° 5 5291522..5291689 166 N° 6 5293042..5293071 28  
join(5288568..5288810,5290232..5290308,5290406..5290467,5291280..5291398,5291522 ..5291689,5293042..5293071)


exon

Literature and cross-references SbGPx04 (Sobic.010G067100.1 [2.1] / Sb10g005820 [1.4])
Literature Cordonnier-Pratt,M.-M., Gingle,A., Marsala,C. and Pratt,L.H. An EST database from Sorghum: light-grown seedlings.
DNA ref. Phytozome 12:   chromosome_10 (5288568..5293071)
Cluster/Prediction ref. UniGene:   Sbi.11252
Protein sequence: SbGPx04 (Sobic.010G067100.1 [2.1] / Sb10g005820 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   232
PWM (Da):   %s   24896.97  
PI (pH):   %s   9.98
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAPAFTSLLPAATSAAAATASRLPSAAAGAASTFARLPHHPTGWAGASVAAPRTAAARRRAPGVAYATAATDKSIYDYTVKDIDGKDVPLKKFKNKVLLIVNVASQCGLTTANYTELSHI
YEKYKTGFEILAFPCNQFGAQEPGSNTQIKQFACTRFKAEFPIFDVDVNGPNTAPIYKFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLLAA*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 10, 5 introns) and 3 ESTs + 1 EST (BM330007, EL732359).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCCCGCGTTCACTAGCCTCCTCCCCGCCGCGACCTCCGCCGCCGCCGCGACCGCCTCGCGGCTCCCCTCTGCCGCCGCCGGAGCGGCATCCACCTTCGCGCGTCTCCCGCATCAC
CCGACGGGCTGGGCTGGGGCCTCCGTCGCGGCGCCGCGTACGGCGGCGGCGCGCAGGCGGGCGCCCGGCGTCGCCTACGCCACCGCCGCCACCGACAAGAGCATCTACGACTACACCGTT
AAGAGGTGGCCTCTTTTCTTCTGTTCTGCTGAGATTTCCGCTTGCCATGGCTCCGTGATATTATTTTTATTTTTATTTTTATTTTTATTTTTATTTTTATTTTTGCCCATAGCACCGTCT
GATTCATTTAGACCCTGACTGTTTTTGTCTTGCTGCTTATTGCGCGCGGTTACTGTATTAGGTATCGAGGTGGTATTGTTGGGGTAGGTGGCCGGTGGGGGCGTTGCAACCATATACTGA
TTGGTGTTTTAAGTGTTCCGTGACGCTGACTGTTATATTTGATAATTGGCTGGAACATCCATCACGTGAATGCTATTGAAGCGTTTACAATGTGTATGGCAACATTAGTATCACTAGGGT
TGCAATGTGTTGCGAATCGTAGAATGTGTTTGTGGAATTATGTGTCCTAACTCCTAAGGAGCTGTTGAGGTAGGCACAAATCCATGGGCGATACATTTTATGATATAATACATGTTTTAT
ATTGTTGTTGAACTTGGCTGAAGTTGACCAAATCAGGTTGGCAGAGTTACGGCCAGTTTTGCAGATCAGATCCTTCTAAGGTTAGGTATCAAGGGCACAGAGTGTTGTAGCAGTAGACTG
AATGATTCCCCATTCTTCTGAATTTTAAAGATGCAAAGCACACTGTGCTTGTTTTCCAACTACCATACCACATAAATTATAAAAATGGATATTGTCGTTTTTTTGGCATGTAATGGTAAC
CAACTAGATGATTTCCTGAACTTTCACAGAACACACCTCTTCTTTTTCAGATGCATGATTGTGGTAGAAATAAGTTTGCATCTGAGTCATGCTTTATGATGACAGTGTTAAACCCACCAT
GGATATTGCTGTTCAATAATATGTTCATTCATGTGCATATTTTCGATTGATTGAACATGTAAATATTTCTATTCATCCTTTCAACTGTATGTCTTTATTGGCAAATTTTTAAGGTGCATG
CAAAGTTTGAAGGTGGGTATTTTAAAACATTGTTTTTAGGATGCATCAGGAAATTCTTGTAGCACTAGACTTATTGGACCAGCTAACCAGCTATGGGCTAGTGAATTACTTAAAATAGCA
GGGTGGTTACCAGCTAACCAGCTATGGGCTAGTGAATGACTTAAAATAGCAGGGTGGTTAGTTGCAGAAATATCAAAATTGTACATGCAATACATGTTCAGGCAGGGTCACAGTGAAAAT
AAGTAAAACAAAGAGAGCTTATTATGAGAAATTTTATGGGATACCATTTGTTTAGTGCTGAAATCTGAAGTTTGTGAATTTTAGGTTTCCCCAATGCTTTTCCTCCACATGTTGTAGTTT
ATTGGCATCTTACATACGGATACAGGAAGAAATAACTTTATTACTTTTACCTTAATAAGATCAAATATCTATGCACCTGTACCTGAAAGAATTATTCACTTTTCAGGACATTGATGGAAA
AGATGTTCCTCTTAAAAAGTTCAAGAATAAGGTGTTGCTGATTGTTAACGTTGCTTCTCAATGTGGTAATTTCATTGAAAAAAATCTTTCACTAACCACATTCTATGGTAATTTGTTTAG
TATTTTCTGGCATTTAACTTGGCATTCCTCTGTGAACCTCAGTGGGTTGACAACAGCAAATTACACTGAACTATCCCATATCTATGAGAAGTACAAGACTCAAGAGGTATGGCAATTTAC
ACTGAACAATGTTGTGTATAGTGTATACTTATCATTTTAGGAAATCGAAACTAGACATTATACTTCCAATTAAAAGAGTCGCCAAAAGTTAAGTTGCTGTACCCTTTCAGTTGTACGTCT
GATCCTACTTATCTCGTAAAACAACACAATGAAGACCAGCAGTTTCACTCTGATATACGCTATGTTTCTTGTTTATGCCACTTTGTGGGATCAGTCAATTAGGCCTCTTGTTTTTATGTA
AGTGACCTTTTTGTTTGTCACATATATCCAGTACGCCTACTCTACTGGATCATCTCAATGCAGTTGCTGACTGTCCTGATTTCTTGTCTGAGTGGGCATAGGTCTAGCTGTCTAGGAGGT
TAAAGGTTTCTATTGCTTTTTGCAATATTTCTTGAGTCGTCATAAGTGAGTAGTTCTTGCTTAATATATCTGTGTGGGGGCAGACCCACATTGAACCAAGCCAGGGCACATGCCCACACT
CATTTTTCTGTTTCAGTGGACGTTGGGCCTTACTAAGGTAGTTGCAAAAGCGCAGTAGTTACCAGACCCCTGCTTGATTTTTGGGCTGATCCGCCCCTTAGTGTGTACAGCCATTCCAAA
TGTTGTCCTTGTGAAGAGGATCCCCCCCTACTCTACAGTTAGTTCCAAAAGTGAACTTTAGAGTTTTGATGCACATTCTCCTCTGAGATACAGGAAAAGGAAATGTTGATGTTAGCACGA
AGCCATGAACCTTGACTTCTTGGGTTAATAGTAGATTTGGCATCCTGCATTGTGTTTAATAGTTTATTTGACATGTAGGGTTTGAGATTCTGGCATTTCCTTGCAATCAATTTGGTGCAC
AAGAACCTGGATCAAATACTCAGATTAAGCAGTTTGCATGTACAAGATTCAAAGCTGAATTTCCTATTTTTGACAAGAGGTATGGTAACTGCAGGCAGCTCAGTCCTCTGTTCCATAGTT
TGTCCTGCTTAACATTGTCTGACTTTACAAATAAAAAAATATCAGTGCATGATGTCTTTTGCTCTTCTTTCTACAATGTCAGGTTGATGTCAATGGACCTAATACAGCCCCCATCTATAA
ATTTCTGAAGTCCAGTGCTGGAGGATTTTTAGGTGATCTAGTCAAGTGGAATTTTGAGAAGTTCTTAGTGGACAAGAATGGCAAAGTTATTGAGAGATATCCACCAACAACTTCACCATT
CCAGATTGAGAGGTGCGTGATTACATCTCTAACTCACTACATCACACCTTTGTATATTCAGTCTATTTTTGGACTCTGTGTTACTCAAAATGAACATTTTCTTTTCCATATAGTTATAAA
GGCTGATAGGTACTTAATTAGGTGATGGGCACTTAATTACATATGCCTATGCAGTGCTATCAATCATTCCTTTCCCTATTAAGTAGTGATCTTGTGAGCATATCATGTGTCAATTAAGTG
GAAGCATGTAATCATAATATTTATAACCTATGAAACATTTTTGAAGAATCAATGAAACTAAGAATTAAATCAATTGTATTTAATAAAAAAAGAATTAAATCAATTTGTCCTCCACAGCTG
ATTTTTATGTAGTAAATTTGAAATAAAAGATAGAATGAAATAACAACCTGTGGACCCAATAATAGGTTTTGTGTACATCACGTTTAGGGATGATGACTTAGACGACCATCTTTTGGAGTG
TCATTTAACATGTTTTGCTCATAAAGTTGCTTTAGTAGCCATCTTGAGGAATGGCATTTTAATTTTTTCTTGATGCTTGGTGCCTGGTACACCAATAGCACAGAAAGTACTTGATAGGTA
GGCAACTAGGGTGCCTGGTGCATCCACCTGAAATTAACCTTTTGTCACACGTACTGGGTTTCAATTGTTAAGTCTTTGGCCCTGCAAGGCTATGCCTATAATAGAGAGCTTCATATGGAA
TTTCCAGGTGGCTCTAATAGTTCATGTTTGGCAGTGCTGACAAATAGAATGGCCCTATGAAAAGAATTTGTCAATGACAGTGCTAAGTTGTGAACTTGTGATAATACATGAGCTACGAGC
ACGCCAACGGTGGGATTGTTTGGCTAAGAACTTTAGTTTTACTGTGATAGAGGCTTTTACTGATGTTCTGGAGCTCGCTTTGTCAAAAGAAGCATCCGGTACTGGTTTTGGTATAAAATA
TTCTCAAGTTGCAGTAATGGATTAGTTTTCGACTTTCATCGTGTTTTGTGCTGTCATTTTGAAGTGGAAAGCGAGATCCCATCAGTTCTTTTTCCATTTATCTTACCATTCATTTGAGGA
ACAATTTTGCTTTCAACCTGTTCTTCCTGTCACATTTCAGTGCATTAAGGCAGCTTTGGCACACAATCATTGGCTTTGAAATCTTTCGGTCGGTTTTAGTTTTAAAATGCCCACTCTTGT
GTTTCAACGAGTCGCACGTTCAACTGTCTTCTTGCGGTTATGATTCCTTAGGCCACTTGCTTAAGAAAGAAATCCAAAGCCTTAGCGCCGACCTCCCTGCGGTTTTCGGCTTTCATTACC
ATTCCACGTTGCTCACAGCCTCCTTGCTATGAATTTTCTTGCAGAAGGACATCCAGAAACTCCTTGCGGCATAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCCCGCGTTCACTAGCCTCCTCCCCGCCGCGACCTCCGCCGCCGCCGCGACCGCCTCGCGGCTCCCCTCTGCCGCCGCCGGAGCGGCATCCACCTTCGCGCGTCTCCCGCATCAC
CCGACGGGCTGGGCTGGGGCCTCCGTCGCGGCGCCGCGTACGGCGGCGGCGCGCAGGCGGGCGCCCGGCGTCGCCTACGCCACCGCCGCCACCGACAAGAGCATCTACGACTACACCGTT
AAGGACATTGATGGAAAAGATGTTCCTCTTAAAAAGTTCAAGAATAAGGTGTTGCTGATTGTTAACGTTGCTTCTCAATGTGGGTTGACAACAGCAAATTACACTGAACTATCCCATATC
TATGAGAAGTACAAGACTCAAGGGTTTGAGATTCTGGCATTTCCTTGCAATCAATTTGGTGCACAAGAACCTGGATCAAATACTCAGATTAAGCAGTTTGCATGTACAAGATTCAAAGCT
GAATTTCCTATTTTTGACAAGGTTGATGTCAATGGACCTAATACAGCCCCCATCTATAAATTTCTGAAGTCCAGTGCTGGAGGATTTTTAGGTGATCTAGTCAAGTGGAATTTTGAGAAG
TTCTTAGTGGACAAGAATGGCAAAGTTATTGAGAGATATCCACCAACAACTTCACCATTCCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAA

Retrieve as FASTA