Entry information : SmRboh04-1_39 (SmRboh04a_39)
Entry ID 6093
Creation 2008-02-08 (Christophe Dunand)
Last sequence changes 2010-06-01 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmRboh04-1_39 (SmRboh04a_39)
Name (synonym) SmRboh04-1_39 (SmRboh04a_39)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh005]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmRboh04-1_39
start..stop
S start..stop
SmRboh04-2_88 1588 0 1..788 1..789
SmRboh03-2_66 1019 0 1..788 16..796
SmRboh02-1_19 987 0 33..788 128..895
SmRboh02-2_137 986 0 15..788 112..902
Gene structure Fichier Exons


exon

Literature and cross-references SmRboh04-1_39 (SmRboh04a_39)
DNA ref. Phytozome 12:   scaffold_39 (96633..100625)
mRNA ref. JGI transcript:   110111 [Incorrect splicing]
EST ref. GenBank:   FE471911.1 [3' end]  FE471912.1 [Fragment]
Protein sequence: SmRboh04-1_39 (SmRboh04a_39)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   788 (294)
PWM (Da):   %s   89068.12 (31864.5) Transmb domain:   %s   i235-257o321-343i371-393o419-441i598-615o
PI (pH):   %s   9.59 (10.07) Peptide Signal:   %s   cut: 23 range:23-316
Sequence
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MPVDFSPDREPPAAAAAAAAAAAPPAIATTSRAIEGLRFIDKSNR
DTNWETVDARFRKLSAGRPDGRLARSDFGACI
GMKTKEFAGQLFDALSRRRGKEGLTSIGREELSDYWLDMTDKRFDSRMRIFFDLCDKDLDGRIFEDEVKVILLSASANRLSILEEQAEEYAALIMEELDREKNGYIGLLQLEGLLRSPSA
CDHQSQMISSSATLPKSAIGRMESLRRRARVVLLDDWQRVWMIALWFAVMAVLFSWKFIQYSYRSGFPVMGYCLCTAKGAAETLKLNMALILLPVCRNTITWLRSTALATIVPFDDNINF
HK
LVAVAIVIGVFLHGGVHLTCDFYRISSADYIKFIQTLGVNFKFAQPTYLDLVLSIEGMTGIIMVLLMIIAFLLATHWSRRNLVKLHWPFHRLTGFNAFWYSHHLFVLVYGLLIVHSIF
LFLARGWREKT
AWMYIAIPALLYTGERTLRTLRACTYKVSIVKASIYSGNVLALYMTKPPGFRYQSGMYLFLQCPAVSPFEWHPFSITSAPGDEYVSVHIRSLGDWTQELMKIFSQVSFS
GERFHG
FILAFRMISKVYPKLCVDGPYGAPSQDFKKYDILLLVGLGIGATPFISILRDMLNHLKSAEQLGSQSPFSKMFDAARKKAKKNRGPTNAYFYWVTREQSSFEWFKGVMNEVSQL
DHK
AVIEMHNYLTSVYEEGDARSTLIGLVQALHHARSGVDIVSGTRVRTHFARPNWRKVFARLASIHPGARIGVFYCGNSAAGKELDLLSRSYSEKSNTKFIFHKEKF*

Retrieve as FASTA  
Remarks Complete sequence from genomic (12 introns) and 2 ESTs. Incorrect prediction from JGI (splicing error confirmed with EST)
DNA
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CDS
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