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Entry information : SmRboh04-1_39 (SmRboh04a_39)
Entry ID 6093
Creation 2008-02-08 (Christophe Dunand)
Last sequence changes 2010-06-01 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmRboh04-1_39 (SmRboh04a_39)
Name (synonym) SmRboh04-1_39 (SmRboh04a_39)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh005]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmRboh04-1_39
start..stop		 S start..stop
SmRboh04-2_88 1588 0 1..788 1..789
SmRboh03-2_66 1019 0 1..788 16..796
SmRboh02-1_19 987 0 33..788 128..895
SmRboh02-2_137 986 0 15..788 112..902
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 96633..96864 230 N° 2 96918..97077 158 N° 3 97138..97186 47 N° 4 97252..97365 112
N° 5 97422..97826 403 N° 6 98778..99164 385 N° 7 99223..99318 94 N° 8 99373..99488 114
N° 9 99545..99681 135 N° 10 99731..99761 29 N° 11 99796..99955 158 N° 12 100022..100183 160
N° 13 100248..100376 127 N° 14 100437..100625 187  
join(96633..96864,96918..97077,97138..97186,97252..97365,97422..97826,98778..991 64,99223..99318,99373..99488,99545..99681,99731..99761,99796..99955,100022..1001 83,100248..100376,100437..100625)


exon

Literature and cross-references SmRboh04-1_39 (SmRboh04a_39)
DNA ref. Phytozome 12:   scaffold_39 (96633..100625)
mRNA ref. JGI transcript:   110111 [Incorrect splicing]
EST ref. GenBank:   FE471911.1 [3' end]  FE471912.1 [Fragment]
Protein sequence: SmRboh04-1_39 (SmRboh04a_39)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   788 (294)
PWM (Da):   %s   89068.12 (31864.5) Transmb domain:   %s   i235-257o321-343i371-393o419-441i598-615o
PI (pH):   %s   9.59 (10.07) Peptide Signal:   %s   cut: 23 range:23-316
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MPVDFSPDREPPAAAAAAAAAAAPPAIATTSRAIEGLRFIDKSNR
DTNWETVDARFRKLSAGRPDGRLARSDFGACIGMKTKEFAGQLFDALSRRRGKEGLTSIGREELSDYWLDMTDKRFDSRMRIFFDLCDKDLDGRIFEDEVKVILLSASANRLSILEEQAEEYAALIMEELDREKNGYIGLLQLEGLLRSPSA
CDHQSQMISSSATLPKSAIGRMESLRRRARVVLLDDWQRVWMIALWFAVMAVLFSWKFIQYSYRSGFPVMGYCLCTAKGAAETLKLNMALILLPVCRNTITWLRSTALATIVPFDDNINF
HKLVAVAIVIGVFLHGGVHLTCDFYRISSADYIKFIQTLGVNFKFAQPTYLDLVLSIEGMTGIIMVLLMIIAFLLATHWSRRNLVKLHWPFHRLTGFNAFWYSHHLFVLVYGLLIVHSIF
LFLARGWREKTAWMYIAIPALLYTGERTLRTLRACTYKVSIVKASIYSGNVLALYMTKPPGFRYQSGMYLFLQCPAVSPFEWHPFSITSAPGDEYVSVHIRSLGDWTQELMKIFSQVSFS
GERFHGFILAFRMISKVYPKLCVDGPYGAPSQDFKKYDILLLVGLGIGATPFISILRDMLNHLKSAEQLGSQSPFSKMFDAARKKAKKNRGPTNAYFYWVTREQSSFEWFKGVMNEVSQL
DHKAVIEMHNYLTSVYEEGDARSTLIGLVQALHHARSGVDIVSGTRVRTHFARPNWRKVFARLASIHPGARIGVFYCGNSAAGKELDLLSRSYSEKSNTKFIFHKEKF*

Retrieve as FASTA  
Remarks Complete sequence from genomic (12 introns) and 2 ESTs. Incorrect prediction from JGI (splicing error confirmed with EST)
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCAGTGGATTTCTCGCCCGATCGAGAGCCCCCAGCAGCGGCGGCGGCGGCGGCGGCGGCGGCAGCTCCACCCGCGATCGCCACAACCAGTCGCGCGATCGAGGGGCTTCGCTTCATC
GACAAATCCAACCGCGACACGAATTGGGAGACGGTGGATGCGCGATTCCGGAAGCTCAGCGCTGGCAGGCCCGATGGGAGGCTGGCGAGATCGGATTTTGGGGCGTGTATAGAGGTGAGC
TCTCTCTGTTCTTGGCTGGAATCTCTCTGATCGCTCGCTCGCTCCAGGGATGAAAACCAAGGAGTTTGCCGGGCAGCTCTTCGATGCATTGTCGCGGCGGCGAGGCAAGGAGGGATTGAC
GAGCATTGGGCGAGAAGAGCTGAGCGATTACTGGCTCGACATGACGGACAAGCGCTTCGATTCGCGAATGCGCATCTTCTTCGACCTCTGTAAGGCGCTGATTTCTTGCGATTTCTTCCT
GTCGCTGATGCGATCGTGCTGCCACGCAGCTGCGACAAGGATCTGGACGGGCGAATCTTCGAGGACGAGGTAAAAGAGAGGTAAGAACCTTTCTATCCCAGCAAATGCCGTGTCTGGGTA
TCTTGGACTGAGCGAGTGATTCCAGGTGATCTTGCTCAGCGCGTCCGCGAATCGGCTCTCGATCCTCGAGGAGCAGGCCGAGGAGTACGCGGCACTCATCATGGAGGAGCTGGATCGCGA
GAAGAACGGCTACATTGGCGCGTAAGATCATCACTCTTTCACCCATCCAAGCTTACGTGAATCTCTTGGATCTCCAGTTGCTCCAGCTCGAGGGACTGCTGCGAAGCCCCAGCGCCTGCG
ACCACCAGAGCCAGATGATAAGCTCCTCGGCGACGCTGCCCAAGAGCGCGATCGGGAGGATGGAATCGCTGAGGCGGCGCGCGAGGGTGGTGCTCCTGGACGACTGGCAGCGCGTGTGGA
TGATCGCGCTGTGGTTCGCGGTGATGGCGGTGCTCTTTAGCTGGAAGTTCATCCAGTATAGCTACCGCTCGGGGTTTCCAGTGATGGGCTACTGCCTGTGCACTGCCAAGGGCGCCGCCG
AGACGCTCAAGCTCAACATGGCGCTCATCCTTCTCCCGGTTTGCCGGAATACCATCACTTGGCTGAGATCCACCGCGCTCGCCACCATCGTTCCCTTCGACGATAACATCAACTTTCACA
AGAGGTTAGTCTTCTCTCTCCTCTTTCGGTTCTCGTTTGCTTTGATCTTCGCCATAGCTGAGCATGTTTGTCCTACTAGCTTTTCTCTCTCTTTTGTTTTGCTTCCTTCTTCTTTGGGCT
CTTTTTTTTTTTGTTCTTTCTCGTTCTACCATAGTTTTCCTTGGGTTTGCAGTGTTTTTGTGTGAGAATTGTTTCTATTTGCTGCACTCTTGTCTAGATGGATCATATTTTGTTTTTCTG
GCTCTCTCCATCACGTTTTTGTTCTTGATTCACATTTTTGCTGGCTGGATTGGATTAATGTTTTGCAACTTTGTTTTCCCTCTTTGTCTTCTGCAATATTTTTTTTGTCTTTCTCCTTCG
CGAACGCTGCTAACTGAGTTACTCCCACGCACATCTCCCTGATCATGTAAGCCAAGTTTTTCTTCCATGGCTGTCTGTTTTTTGTTTGGTTCTTCGTCACCGCGATGTGTCTCTCCTTTT
GTTCCTTCTTCTTCGCTGCGTCCATCTTTTGCAGTGGTTTGAGTTTTTTTGTTAAAGTTCTTCGCTAAATCTTCACTGTGCTACTGCCAGGAATTTTTTTTCACTACTTCCTGGCTTTTT
GTTTTCACTCTTCTGGTTGATTCTCTCCAGCTGGCTGCCTGTTGCTTGCTGGTCCCTGGTGTTTCTTTCCTTTGTGCCTTTATGCTTTTATTTTCTCTAGTTTCAATCAATCAGTTGATC
ATAATGTTCTCCCTTGACTGATTGATTGTTCTTCGTGTGATCCTGACAGTGGAAAGCTAAAGTATTGTTTCGACCGTCTCTGGTACTTGGCTTGGGTAATGGGTGCTTTGTTGTATATGC
CTTTCTTATACTTTTCGTTGCTTCATCGTCATCGCCATTGTCGTCTTTTTTGCATTGACGAATCTGAGCTTCTTACATGTTTTTTCTTCTTCTTTTTTTTTTTTCTGGAGATCAGCTGGT
TGCAGTAGCAATCGTGATTGGAGTTTTCCTCCACGGGGGAGTTCACTTAACCTGCGATTTTTACCGGATTTCCAGCGCGGACTACATCAAGTTCATACAGACACTAGGCGTGAACTTCAA
GTTTGCCCAGCCGACGTACCTGGATTTGGTGCTTTCGATCGAGGGAATGACCGGGATTATCATGGTGCTGCTCATGATCATCGCGTTTTTGCTGGCCACGCACTGGTCGAGGAGAAATCT
CGTCAAGCTCCACTGGCCATTCCACAGGTTGACGGGCTTCAATGCCTTTTGGTACTCGCACCACTTGTTCGTCCTCGTCTACGGTCTTCTCATCGTTCACTCCATTTTCTTGTTCCTCGC
TCGGGGCTGGAGAGAAAAAACGCGGTAAATCACTTTTATTTTCTTCTTTGTGTCTCGTTGTTCTAAAGCTTTTCCTTCACAGGCTTGGATGTATATAGCTATACCCGCGCTCTTGTACAC
TGGCGAGAGGACTCTGCGAACGCTGAGAGCTTGTACTTACAAAGTTAGCATTGTAAAGAGGTAAACAAAGATGGAATTTTTGTCCAGTTTTGCTCACGATTTGCGATCTTTCAGGCATCC
ATTTATTCAGGAAACGTTCTTGCTTTATACATGACTAAGCCTCCGGGTTTTAGATATCAAAGTGGAATGTATCTCTTCTTGCAATGCCCCGCGGTGTCGCCCTTCGAATGTGGTAAGCTA
GATTTGTGTATGTGTGGTTCGTTTCTTAAGGATTTGTCCGTGTTACAGGCATCCATTCTCCATAACTTCGGCACCGGGAGATGAATATGTAAGTGTACACATACGCAGCCTCGGGGATTG
GACGCAAGAGCTAATGAAGATCTTTTCTCAAGTAAGTTTTTCGGGAGAAAGATTTCATGGCTTATATGTGCTTTTCTTGCAGGTTGTAGATCAGCCAAATGAGCAGCTCAAGTAAGTTAT
CTTAGCTTTTCGTATGATCTCTAAAGTGTGTTTTCCTTTTTTTTTTATCTTTGTCTCGTGTAGATATCCCAAGCTCTGTGTTGATGGACCATATGGAGCACCATCCCAGGATTTCAAAAA
GTATGATATCCTATTGCTGGTGGGACTTGGAATTGGAGCAACACCATTTATAAGCATCCTGAGAGACATGTTGAATCATTTAAAGTCAGCCGAACAGCTTCCTCTGTAAGTATTTTATCT
TCTTTTCTTTTTTCCTCCAGAAGCAATGAACTTACACACATTATCTTCCAGGGATCTCAAAGTCCATTCAGCAAGATGTTCGATGCTGCCAGAAAAAAAGCCAAGAAAAATAGAGGCCCT
ACGAACGCTTACTTCTACTGGGTCACCAGAGAGCAAAGCTCCTTTGAATGGTTCAAGGGAGTCATGAACGAAGTCTCTCAGCTTGATCACAAGAGGTCAGGAAAACGTTTGTGATTTCTA
TCTCCTCCTTTTACAAATCGTTTTGGTGCTTCTTTGCAGGCCGTGATCGAGATGCATAACTATCTAACGAGTGTTTACGAAGAAGGAGACGCTCGCTCCACGCTTATCGGTTTGGTCCAA
GCGTTGCATCACGCACGAAGCGGTGTTGATATTGTCTCTGGCACTCGGGGGTAAGTTCCTTTCTAGTTAATGTTCTTTCTTCTTATTTGTTCTTTCGATTTCTTCCCCAGGTTCGAACGC
ATTTTGCTCGTCCAAACTGGAGGAAAGTGTTTGCGAGGCTTGCATCGATTCATCCAGGTGCCAGAATAGGTGTGTTTTACTGCGGAAACTCGGCAGCAGGAAAGGAGCTCGACCTTCTCT
CGCGGTCTTACTCGGAGAAATCAAATACCAAGTTCATTTTCCACAAGGAAAAGTTCTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCAGTGGATTTCTCGCCCGATCGAGAGCCCCCAGCAGCGGCGGCGGCGGCGGCGGCGGCGGCAGCTCCACCCGCGATCGCCACAACCAGTCGCGCGATCGAGGGGCTTCGCTTCATC
GACAAATCCAACCGCGACACGAATTGGGAGACGGTGGATGCGCGATTCCGGAAGCTCAGCGCTGGCAGGCCCGATGGGAGGCTGGCGAGATCGGATTTTGGGGCGTGTATAGGGATGAAA
ACCAAGGAGTTTGCCGGGCAGCTCTTCGATGCATTGTCGCGGCGGCGAGGCAAGGAGGGATTGACGAGCATTGGGCGAGAAGAGCTGAGCGATTACTGGCTCGACATGACGGACAAGCGC
TTCGATTCGCGAATGCGCATCTTCTTCGACCTCTGCGACAAGGATCTGGACGGGCGAATCTTCGAGGACGAGGTAAAAGAGGTGATCTTGCTCAGCGCGTCCGCGAATCGGCTCTCGATC
CTCGAGGAGCAGGCCGAGGAGTACGCGGCACTCATCATGGAGGAGCTGGATCGCGAGAAGAACGGCTACATTGGCTTGCTCCAGCTCGAGGGACTGCTGCGAAGCCCCAGCGCCTGCGAC
CACCAGAGCCAGATGATAAGCTCCTCGGCGACGCTGCCCAAGAGCGCGATCGGGAGGATGGAATCGCTGAGGCGGCGCGCGAGGGTGGTGCTCCTGGACGACTGGCAGCGCGTGTGGATG
ATCGCGCTGTGGTTCGCGGTGATGGCGGTGCTCTTTAGCTGGAAGTTCATCCAGTATAGCTACCGCTCGGGGTTTCCAGTGATGGGCTACTGCCTGTGCACTGCCAAGGGCGCCGCCGAG
ACGCTCAAGCTCAACATGGCGCTCATCCTTCTCCCGGTTTGCCGGAATACCATCACTTGGCTGAGATCCACCGCGCTCGCCACCATCGTTCCCTTCGACGATAACATCAACTTTCACAAG
CTGGTTGCAGTAGCAATCGTGATTGGAGTTTTCCTCCACGGGGGAGTTCACTTAACCTGCGATTTTTACCGGATTTCCAGCGCGGACTACATCAAGTTCATACAGACACTAGGCGTGAAC
TTCAAGTTTGCCCAGCCGACGTACCTGGATTTGGTGCTTTCGATCGAGGGAATGACCGGGATTATCATGGTGCTGCTCATGATCATCGCGTTTTTGCTGGCCACGCACTGGTCGAGGAGA
AATCTCGTCAAGCTCCACTGGCCATTCCACAGGTTGACGGGCTTCAATGCCTTTTGGTACTCGCACCACTTGTTCGTCCTCGTCTACGGTCTTCTCATCGTTCACTCCATTTTCTTGTTC
CTCGCTCGGGGCTGGAGAGAAAAAACGGCTTGGATGTATATAGCTATACCCGCGCTCTTGTACACTGGCGAGAGGACTCTGCGAACGCTGAGAGCTTGTACTTACAAAGTTAGCATTGTA
AAGGCATCCATTTATTCAGGAAACGTTCTTGCTTTATACATGACTAAGCCTCCGGGTTTTAGATATCAAAGTGGAATGTATCTCTTCTTGCAATGCCCCGCGGTGTCGCCCTTCGAATGG
CATCCATTCTCCATAACTTCGGCACCGGGAGATGAATATGTAAGTGTACACATACGCAGCCTCGGGGATTGGACGCAAGAGCTAATGAAGATCTTTTCTCAAGTAAGTTTTTCGGGAGAA
AGATTTCATGGCTTATTTATCTTAGCTTTTCGTATGATCTCTAAAGTATATCCCAAGCTCTGTGTTGATGGACCATATGGAGCACCATCCCAGGATTTCAAAAAGTATGATATCCTATTG
CTGGTGGGACTTGGAATTGGAGCAACACCATTTATAAGCATCCTGAGAGACATGTTGAATCATTTAAAGTCAGCCGAACAGCTTCCTGGATCTCAAAGTCCATTCAGCAAGATGTTCGAT
GCTGCCAGAAAAAAAGCCAAGAAAAATAGAGGCCCTACGAACGCTTACTTCTACTGGGTCACCAGAGAGCAAAGCTCCTTTGAATGGTTCAAGGGAGTCATGAACGAAGTCTCTCAGCTT
GATCACAAGGCCGTGATCGAGATGCATAACTATCTAACGAGTGTTTACGAAGAAGGAGACGCTCGCTCCACGCTTATCGGTTTGGTCCAAGCGTTGCATCACGCACGAAGCGGTGTTGAT
ATTGTCTCTGGCACTCGGGTTCGAACGCATTTTGCTCGTCCAAACTGGAGGAAAGTGTTTGCGAGGCTTGCATCGATTCATCCAGGTGCCAGAATAGGTGTGTTTTACTGCGGAAACTCG
GCAGCAGGAAAGGAGCTCGACCTTCTCTCGCGGTCTTACTCGGAGAAATCAAATACCAAGTTCATTTTCCACAAGGAAAAGTTCTAG

Retrieve as FASTA