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Entry information : SmRboh04-2_88 (SmRboh04b_88)
Entry ID 7387
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2010-06-01 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-02-23 (Christophe Dunand)
Peroxidase information: SmRboh04-2_88 (SmRboh04b_88)
Name (synonym) SmRboh04-2_88 (SmRboh04b_88)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh005]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmRboh04-2_88
start..stop		 S start..stop
SmRboh04-1_39 1588 0 1..789 1..788
SmRboh03-2_66 1015 0 1..789 16..796
SmRboh02-1_19 995 0 33..789 128..895
SmRboh02-2_137 993 0 15..789 112..902
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7387' 'complement(join(778316..778504,778565..778693,778758..778919,778986..779135,779215..779395,779452..779567,779622..779717,779776..780162,781111..781515,781572..781685,781751..781799,781860..782019,782073..782304))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 782073..782304 230 N° 2 781860..782019 158 N° 3 781751..781799 47 N° 4 781572..781685 112
N° 5 781111..781515 403 N° 6 779776..780162 385 N° 7 779622..779717 94 N° 8 779452..779567 114
N° 9 779215..779395 179 N° 10 778986..779135 148 N° 11 778758..778919 160 N° 12 778565..778693 127
N° 13 778316..778504 187  
complement(join(778316..778504,778565..778693,778758..778919,778986..779135,7792 15..779395,779452..779567,779622..779717,779776..780162,781111..781515,781572..7 81685,781751..781799,781860..782019,782073..782304))


exon

Literature and cross-references SmRboh04-2_88 (SmRboh04b_88)
DNA ref. Phytozome 12:   scaffold_88 (782304..778316)
mRNA ref. JGI transcript:   127954 [Incorrect prediction]
Protein sequence: SmRboh04-2_88 (SmRboh04b_88)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   789
PWM (Da):   %s   88956.92 Transmb domain:   %s   i235-257o321-343i371-393o419-441i599-616o
PI (pH):   %s   9.5
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MPVDFSPDREPPAAAAAAAAAAAPPAIATTSRAIEGLRFIDKSNRDTNWETVDARFRKLSAGRPDGRLARSDFGACIGMKTKEFAGQLFDALSRRRGKEGLTSIGREELSDYWLDMTDKR
FDSRMRIFFDLCDKDLDGRIFEDEVKVILLSASANRLSILEEQAEEYAALIMEELDREKNGYIGLLQLEGLLRSPSACDHQSQMISSSATLPKSAIGRMESLRRRARVVLLDDWQRVWMI
ALWFAVMAVLFSWKFIQYSYRSGFPVMGYCLCTAKGAAETLKLNMALILLPVCRNTITWLRSTALATIVPFDDNINFHKLVAAAIVIGVFLHGGVHLTCDFYRISSADYIKFIQTLGVNF
KFAQPTYLDLVLSIEGMTGIIMVLLMIIAFLLATHWSRRNLVKLHWPFHRLTGFNAFWYSHHLFVLVYGLLIVHSFFLFLARDWREKTAWMYIAIPALLYTGERTLRTLRACTYKVSIVKASIYSGNVLALYMTKPPGFRYQSGMYLFLQCPAVSPFEWHPFSITSAPGDEYVSVHIRSLGDWTQELMKIFSQVSFPGERFQGLSAFLAGCRSAKRAALCVDGPYGAPSQDFKKYDILLL
VGLGIGATPFISILRDMLNHLKSAEQLPGSQSPFSKMFDAARKKAKKNRGPTNAYFYWVTREQSSFEWFKGVMNEVSQLDHKAVIEMHNYLTSVYEEGDARSTLIGLVQALHHARSGVDI
VSGTRVRTHFARPNWRKVFARLASIHPGARIGVFYCGNSAAGKELDLLSRSYSEKSNTKFIFHKEKF*

Retrieve as FASTA  
Remarks Complete sequence from genomic (12 introns). Incorrect prediction from JGI (splicing error confirmed with EST).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCAGTGGATTTCTCGCCCGATCGAGAGCCCCCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCTCCACCCGCGATCGCCACAACCAGTCGCGCGATCGAGGGGCTTCGCTTCATC
GACAAGTCCAACCGCGACACGAATTGGGAGACGGTGGATGCGCGATTCCGGAAGCTTAGCGCTGGCAGGCCCGATGGGAGGCTGGCGAGATCGGATTTTGGGGCGTGCATCGGTGAGTTC
TCTCTGTTCTTGGCTGGAAACTCTCTGATCGCGCGCTCGCTCCAGGGGGATGAAAACCAAGGAGTTTGCCGGGCAGCTCTTCGATGCATTGTCGCGGCGGCGAGGCAAGGAGGGATTGAC
GAGCATTGGGCGAGAAGAGCTGAGCGATTACTGGCTCGACATGACGGACAAGCGCTTCGATTCGCGAATGCGCATCTTCTTCGACCTGTAAGGCGCTGATTTCTTGCGATTTCTTCCTGT
CGCTGATGCGATCGTGCTGCCACGCAGCTCTGCGACAAGGATCTGGACGGGCGAATCTTCGAGGACGAGGTAAAAGAGGTAAGAACCTTTCTATCCCAGCAAATGCCGTGTCTGGGTATC
TTGGACTGAGCGAGTGATTCCAGGTGTGATCTTGCTCAGTGCGTCCGCGAATCGGCTCTCGATCCTCGAGGAGCAGGCGGAGGAGTACGCGGCACTCATCATGGAGGAGCTTGATCGCGA
GAAGAACGGCTACATTGGCGTAAGATCATCACTCTTTCACCCATCCAAGCTTACGTGAATCTCTTGGATCTCCAGTTTTGCTCCAGCTCGAGGGACTGCTGCGAAGCCCCAGCGCCTGCG
ACCACCAGAGCCAGATGATAAGCTCCTCGGCGACGCTGCCCAAGAGCGCTATCGGGAGGATGGAATCGCTGCGGCGGCGCGCGAGGGTGGTGCTCCTGGACGACTGGCAGCGCGTGTGGA
TGATCGCGCTGTGGTTCGCGGTGATGGCGGTGCTCTTTAGCTGGAAGTTCATCCAGTATAGCTACCGCTCGGGGTTTCCAGTGATGGGCTACTGCCTGTGCACTGCCAAGGGCGCCGCCG
AGACGCTCAAGCTCAACATGGCGCTCATCCTTCTCCCGGTTTGCCGGAATACCATCACTTGGCTCAGATCCACCGCGCTCGCCACCATCGTTCCCTTTGACGATAACATCAACTTTCACA
AGGTTAGTCTTCTCTCTTCTCTTTTGCTTCTTTGATCTTCGCCATAGCTGAGCATGTTTGTCCTACTAGCTTTTCTCTCTCTTTTTTTTGCTTCTTCTTTGGGCTCTTTTTTTTTTTGTT
CTTTCTCGTTCTACCAGTTTTTCCTTGGGTTTGCAGTGTTTTTGTGTGAGAATTCTTTCTCTGTGCTGCACTCTTGTCTAGATGGATCATATTTTGTTTTCTGGTTCTCTCCATCACGTT
TTTGTTCTTGATTCACATTTTTGCTGGCTGGATTGGATTAATGTTTTGCAACTTTGTTTTCCCTCCTTGTCTTCTGCAAAGTTTTTTTGTCTTTCTCCTTCGCGAACGCTGCTAACTGAG
TTACTCCCACGCACATCTCCCTGATCATGTAAGCCAAGTTTTTCTTCCATGGCTGCCTGTTTTTTGTTTGGTTCTTCGTCACCGCGATGCGTCTCTCCTTTTGTTCCTGCTGCTTCGCTG
CGTCCATCTTTTGCAGTGGTTTGAGTTTTTTTGTTACAATTTCTTCGTACAAGTTCTTCGCTAAATCTTCACTGTGCTACTGCCATGAATTTTTTTTCACTACTCCCTGGCTTTTTGTTT
TCACTCTTCTGGTTGATTCTCTCCAGCTGGCTGCCTGTTGCTTGCTGGTCCCTGGTGTTTCTTTCCCTTGTGCCTTTATGCTTTTATTTTCTCTAGTTTCAATCAACCAGTTGATCATAA
TGTTCTCCCTTGACTGATTGATTGTTCTTCGTGTGATCCTGACAGTGGAAAGCTAAAGTATTGTTTCGACCGTCTCTGGTACTTGGCTTGGGTAATGGGTGCTTTGTTGTATATGCCTTT
CTTTATACTTTTCGTTGCTTCATCGTCATCGCCATTGTCGTCTTTTTTGCATTGAAGAATCTGAGCTTCTTACATGTTTCTTCTTCTTCTTCTTTTTTTCTGGAGATCAGCTCTGGTTGC
AGCAGCAATCGTGATTGGAGTTTTCCTCCACGGGGGAGTTCACTTAACCTGCGATTTTTACCGGATTTCCAGCGCGGACTACATCAAGTTCATACAGACACTAGGCGTGAACTTCAAGTT
TGCCCAGCCGACGTACCTGGATTTGGTGCTTTCGATCGAGGGAATGACCGGGATTATCATGGTGCTGCTCATGATCATCGCGTTTTTGCTGGCCACGCACTGGTCCAGGAGAAATCTCGT
CAAGCTCCACTGGCCATTCCACAGGTTGACGGGCTTCAATGCCTTTTGGTACTCGCACCACTTGTTCGTCCTCGTCTACGGTCTTCTCATCGTTCACTCCTTTTTCTTGTTCCTCGCTCG
GGACTGGAGAGAAAAAACGGTAAATCACTTTTATTTTCTTCTTTGTGTCTCGTTGTTCTAAAGCTTTTCCTTCACAGGCGCTTGGATGTATATAGCTATACCCGCGCTCTTGTACACTGG
CGAGAGGACTCTACGAACGCTGAGAGCTTGTACTTACAAAGTTAGCATTGTAAAGGTAAACAAAGATGGAATTTTTGTCCAGTTTTGCTCACGATTTGCGATCTTTCAGGCGCATCCATT
TATTCAGGAAACGTTCTTGCTTTATACATGACTAAGCCTCCGGGTTTTAGATATCAAAGTGGAATGTATCTCTTCTTGCAATGCCCCGCAGTGTCGCCTTTCGAATGGTAAGCTAGATTT
GTGTATGTGTGGTTCGCTTCTTAAGGATTTGTCTGTGTTACAGGCGCATCCATTCTCCATAACTTCGGCACCGGGAGATGAATATGTAAGTGTACACATACGCAGCCTCGGGGATTGGAC
GCAAGAGCTAATGAAGATCTTTTCTCAAGTAAGTTTTCCGGGAGAAAGATTTCAGGGCTTAAGTGCTTTTCTTGCAGGTTGTAGATCAGCCAAACGAGCAGCTCAAGTAAGTTTTCTTAG
CTTTTCGTATGATCTCTAAAGTGTTTTCCTTTTTTTTAATCTTTGTCTCGTGTAGATATCCCAAGCTCTCTGTGTTGATGGACCATATGGAGCACCATCCCAGGATTTCAAAAAGTACGA
TATCCTATTGCTGGTGGGACTTGGAATTGGAGCAACACCATTTATAAGCATCCTGAGAGACATGTTGAATCATTTAAAGTCAGCCGAGCAGCTTCCTGTAAGTATTTTATCTTCTTTTCT
TTTTTCCTCCAGAAGCAATGAACTTACACACATTATCTTCCAGGGGGATCTCAAAGTCCATTCAGCAAGATGTTCGATGCTGCCAGAAAAAAAGCCAAGAAAAATAGAGGCCCCACGAAC
GCTTACTTCTACTGGGTCACCAGAGAGCAAAGCTCCTTTGAATGGTTCAAGGGAGTCATGAACGAAGTCTCTCAGCTTGATCACAAGGTCAGGAAAACGTTTGTGATTTCTATCTCCTCC
TTTTACAAATCGTTTTGGTGCTTCTTTGCAGGCGCCGTGATCGAGATGCATAACTATCTAACGAGTGTTTACGAAGAAGGAGACGCTCGCTCCACGCTTATCGGTTTGGTCCAAGCGTTG
CATCACGCACGAAGCGGTGTTGATATTGTCTCTGGCACTCGGGTAAGTTCCTTTCTAGTTAATGTTCTTTCTTCTTATTTGTTCTTTCGATTTCTTCCCCAGGTGTTCGAACGCATTTTG
CTCGTCCAAACTGGAGGAAAGTGTTTGCGAGGCTTGCATCGATTCATCCAGGTGCCAGAATAGGTGTGTTTTACTGCGGAAACTCGGCAGCAGGAAAGGAGCTCGACCTTCTCTCGCGGT
CTTACTCGGAGAAATCGAATACCAAGTTCATTTTCCACAAGGAAAAGTTCTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCAGTGGATTTCTCGCCCGATCGAGAGCCCCCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCTCCACCCGCGATCGCCACAACCAGTCGCGCGATCGAGGGGCTTCGCTTCATC
GACAAGTCCAACCGCGACACGAATTGGGAGACGGTGGATGCGCGATTCCGGAAGCTTAGCGCTGGCAGGCCCGATGGGAGGCTGGCGAGATCGGATTTTGGGGCGTGCATCGGGATGAAA
ACCAAGGAGTTTGCCGGGCAGCTCTTCGATGCATTGTCGCGGCGGCGAGGCAAGGAGGGATTGACGAGCATTGGGCGAGAAGAGCTGAGCGATTACTGGCTCGACATGACGGACAAGCGC
TTCGATTCGCGAATGCGCATCTTCTTCGACCTCTGCGACAAGGATCTGGACGGGCGAATCTTCGAGGACGAGGTAAAAGAGGTGATCTTGCTCAGTGCGTCCGCGAATCGGCTCTCGATC
CTCGAGGAGCAGGCGGAGGAGTACGCGGCACTCATCATGGAGGAGCTTGATCGCGAGAAGAACGGCTACATTGGCTTGCTCCAGCTCGAGGGACTGCTGCGAAGCCCCAGCGCCTGCGAC
CACCAGAGCCAGATGATAAGCTCCTCGGCGACGCTGCCCAAGAGCGCTATCGGGAGGATGGAATCGCTGCGGCGGCGCGCGAGGGTGGTGCTCCTGGACGACTGGCAGCGCGTGTGGATG
ATCGCGCTGTGGTTCGCGGTGATGGCGGTGCTCTTTAGCTGGAAGTTCATCCAGTATAGCTACCGCTCGGGGTTTCCAGTGATGGGCTACTGCCTGTGCACTGCCAAGGGCGCCGCCGAG
ACGCTCAAGCTCAACATGGCGCTCATCCTTCTCCCGGTTTGCCGGAATACCATCACTTGGCTCAGATCCACCGCGCTCGCCACCATCGTTCCCTTTGACGATAACATCAACTTTCACAAG
CTGGTTGCAGCAGCAATCGTGATTGGAGTTTTCCTCCACGGGGGAGTTCACTTAACCTGCGATTTTTACCGGATTTCCAGCGCGGACTACATCAAGTTCATACAGACACTAGGCGTGAAC
TTCAAGTTTGCCCAGCCGACGTACCTGGATTTGGTGCTTTCGATCGAGGGAATGACCGGGATTATCATGGTGCTGCTCATGATCATCGCGTTTTTGCTGGCCACGCACTGGTCCAGGAGA
AATCTCGTCAAGCTCCACTGGCCATTCCACAGGTTGACGGGCTTCAATGCCTTTTGGTACTCGCACCACTTGTTCGTCCTCGTCTACGGTCTTCTCATCGTTCACTCCTTTTTCTTGTTC
CTCGCTCGGGACTGGAGAGAAAAAACGGCTTGGATGTATATAGCTATACCCGCGCTCTTGTACACTGGCGAGAGGACTCTACGAACGCTGAGAGCTTGTACTTACAAAGTTAGCATTGTA
AAGGCATCCATTTATTCAGGAAACGTTCTTGCTTTATACATGACTAAGCCTCCGGGTTTTAGATATCAAAGTGGAATGTATCTCTTCTTGCAATGCCCCGCAGTGTCGCCTTTCGAATGG
CATCCATTCTCCATAACTTCGGCACCGGGAGATGAATATGTAAGTGTACACATACGCAGCCTCGGGGATTGGACGCAAGAGCTAATGAAGATCTTTTCTCAAGTAAGTTTTCCGGGAGAA
AGATTTCAGGGCTTAAGTGCTTTTCTTGCAGGTTGTAGATCAGCCAAACGAGCAGCTCAACTCTGTGTTGATGGACCATATGGAGCACCATCCCAGGATTTCAAAAAGTACGATATCCTA
TTGCTGGTGGGACTTGGAATTGGAGCAACACCATTTATAAGCATCCTGAGAGACATGTTGAATCATTTAAAGTCAGCCGAGCAGCTTCCTGGATCTCAAAGTCCATTCAGCAAGATGTTC
GATGCTGCCAGAAAAAAAGCCAAGAAAAATAGAGGCCCCACGAACGCTTACTTCTACTGGGTCACCAGAGAGCAAAGCTCCTTTGAATGGTTCAAGGGAGTCATGAACGAAGTCTCTCAG
CTTGATCACAAGGCCGTGATCGAGATGCATAACTATCTAACGAGTGTTTACGAAGAAGGAGACGCTCGCTCCACGCTTATCGGTTTGGTCCAAGCGTTGCATCACGCACGAAGCGGTGTT
GATATTGTCTCTGGCACTCGGGTTCGAACGCATTTTGCTCGTCCAAACTGGAGGAAAGTGTTTGCGAGGCTTGCATCGATTCATCCAGGTGCCAGAATAGGTGTGTTTTACTGCGGAAAC
TCGGCAGCAGGAAAGGAGCTCGACCTTCTCTCGCGGTCTTACTCGGAGAAATCGAATACCAAGTTCATTTTCCACAAGGAAAAGTTCTAG

Retrieve as FASTA