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Entry information : SmPrx13-2_57 (SmPrx13b_57)
Entry ID 6996
Creation 2009-10-05 (Paula Nunes)
Last sequence changes 2011-01-25 (Toky Ramarohetra (Scipio))
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: SmPrx13-2_57 (SmPrx13b_57)
Name (synonym) SmPrx13-2_57 (SmPrx13b_57)
Class Class III peroxidase    [Orthogroup: Prx053]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrx13-2_57
start..stop		 S start..stop
SmPrx13-1_0 685 0 1..332 1..332
SmPrx14-2_57 685 0 1..332 1..332
SmPrx14-1_0 683 0 1..332 1..332
SmPrx30-1_84 423 1.45e-149 8..332 13..331
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 466036..466263 226 N° 2 465784..465981 196 N° 3 465563..465725 161 N° 4 465074..465483 408
complement(join(465074..465483,465563..465725,465784..465981,466036..466263))


exon

Literature and cross-references SmPrx13-2_57 (SmPrx13b_57)
DNA ref. Phytozome 12:   scaffold_57 (466263..465074)
mRNA ref. JGI transcript:   117910 [Incorrect splicing]
Protein sequence: SmPrx13-2_57 (SmPrx13b_57)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   332 (310)
PWM (Da):   %s   36483.23 (34097.9) Transmb domain:   %s   i7-24o
PI (pH):   %s   8.88 (8.88) Peptide Signal:   %s   cut: 23 range:23-332
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
METWRGSVLVFLLLSLSLGVLAHGESGGRKHGYHSYSRSCPQAER
IIRDTLSKHAGWDRTIPAGVLRLHFHDCFVDGCDGSILLDSTPTDGTKVEKLSLPNFMSARGFEMIEEAKQRLEAACPGVVSCADTLAIAARDSTVMLGGKYYQVPTGRYDGRVSSQERGNTLPSPFGDASALIQNFKERGLSVQDLVVLSGGHTLGTAGCATFSNRLDNFTKTGKPDPTINPRYLSHLRRQCPAPGSPNRVELDKGSEFVFDNSYYKNLARRNGVLTSDQVLNEDSRTSHYVKNFAHKQHDFLSQFAASMVKMGYIGWKN
KHNGEIRRVCSMVNTH

Retrieve as FASTA  
Remarks Sequence complete from genomic (3 introns). No EST. Incorrect transcript prediction from JGI (no intron 1).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAAACTTGGAGAGGGAGCGTTTTGGTTTTCCTGCTGCTGTCACTGAGCTTGGGTGTCTTGGCTCACGGTGAGAGTGGAGGACGCAAGCATGGCTACCACAGCTACTCGAGATCTTGT
CCTCAGGCCGAGAGGATCATAAGGGACACTCTAAGCAAGCACGCCGGTTGGGACAGGACGATACCAGCAGGAGTTCTTCGCTTGCACTTCCACGACTGTTTCGTCGACGTGAGTAGCTTT
ACAAGATTTAAATTCTGGTTTTCTAACTTTGCTGGTCTCCAGGGGGCTGTGATGGATCGATTCTTCTCGACTCAACTCCCACCGACGGAACTAAAGTGGAAAAATTGTCCCTTCCAAACT
TCATGTCCGCCAGGGGCTTCGAGATGATTGAGGAAGCAAAGCAGAGGTTGGAAGCAGCTTGTCCTGGAGTTGTCTCCTGTGCCGACACTCTGGCCATAGCTGCCAGAGACTCGACCGTCA
TGGTAAGCTTAGCATCTTTTTAGAAACGCTGAATCAAGTCCTAAGACGTTGTCACTGCAGCTCTTGGAGGAAAGTATTACCAAGTCCCAACCGGACGCTACGACGGAAGAGTTTCCAGCC
AGGAACGTGGCAACACCTTACCATCCCCGTTTGGCGATGCGTCGGCTCTCATTCAAAACTTCAAGGAGCGCGGCTTGTCAGTCCAGGACCTCGTCGTTCTCTCAGGTACGAATCGATTTC
AACTTCCATCTCTTTCCCTCCAGTTTGTAAGTAGGCATTAACGCTACTCCCTTGCAAACCACAGGTGTGGTCACACTCTTGGTACCGCCGGCTGCGCCACATTCAGCAATCGTTTGGACA
ACTTTACGAAAACTGGCAAGCCGGACCCGACCATCAATCCCAGATACCTCTCGCATCTCCGGAGGCAGTGCCCAGCACCGGGGTCGCCAAACCGTGTGGAGCTGGACAAAGGCTCGGAGT
TTGTGTTCGACAACAGCTACTACAAGAACTTGGCCAGGAGAAACGGGGTCCTCACGTCGGATCAAGTTCTCAACGAGGACTCGAGAACAAGTCACTACGTCAAGAACTTTGCGCACAAGC
AGCACGATTTTTTGTCGCAGTTTGCGGCCTCGATGGTGAAGATGGGATACATTGGGTGGAAGAACAAGCACAATGGGGAAATCAGGAGGGTGTGCTCCATGGTAAACACCCATTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAAACTTGGAGAGGGAGCGTTTTGGTTTTCCTGCTGCTGTCACTGAGCTTGGGTGTCTTGGCTCACGGTGAGAGTGGAGGACGCAAGCATGGCTACCACAGCTACTCGAGATCTTGT
CCTCAGGCCGAGAGGATCATAAGGGACACTCTAAGCAAGCACGCCGGTTGGGACAGGACGATACCAGCAGGAGTTCTTCGCTTGCACTTCCACGACTGTTTCGTCGACGGCTGTGATGGA
TCGATTCTTCTCGACTCAACTCCCACCGACGGAACTAAAGTGGAAAAATTGTCCCTTCCAAACTTCATGTCCGCCAGGGGCTTCGAGATGATTGAGGAAGCAAAGCAGAGGTTGGAAGCA
GCTTGTCCTGGAGTTGTCTCCTGTGCCGACACTCTGGCCATAGCTGCCAGAGACTCGACCGTCATGCTTGGAGGAAAGTATTACCAAGTCCCAACCGGACGCTACGACGGAAGAGTTTCC
AGCCAGGAACGTGGCAACACCTTACCATCCCCGTTTGGCGATGCGTCGGCTCTCATTCAAAACTTCAAGGAGCGCGGCTTGTCAGTCCAGGACCTCGTCGTTCTCTCAGGTGGTCACACT
CTTGGTACCGCCGGCTGCGCCACATTCAGCAATCGTTTGGACAACTTTACGAAAACTGGCAAGCCGGACCCGACCATCAATCCCAGATACCTCTCGCATCTCCGGAGGCAGTGCCCAGCA
CCGGGGTCGCCAAACCGTGTGGAGCTGGACAAAGGCTCGGAGTTTGTGTTCGACAACAGCTACTACAAGAACTTGGCCAGGAGAAACGGGGTCCTCACGTCGGATCAAGTTCTCAACGAG
GACTCGAGAACAAGTCACTACGTCAAGAACTTTGCGCACAAGCAGCACGATTTTTTGTCGCAGTTTGCGGCCTCGATGGTGAAGATGGGATACATTGGGTGGAAGAACAAGCACAATGGG
GAAATCAGGAGGGTGTGCTCCATGGTAAACACCCATTAA

Retrieve as FASTA