1. Browse the Database
  2. View Redoxidase
Entry information : SmGPx02-2_57 (SmGPx02b_57)
Entry ID 7402
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2011-02-23 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-02-23 (Christophe Dunand)
Peroxidase information: SmGPx02-2_57 (SmGPx02b_57)
Name (synonym) SmGPx02-2_57 (SmGPx02b_57)
Class Plant glutathione peroxidase    [Orthogroup: Gpx2001]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmGPx02-2_57
start..stop		 S start..stop
SmGPx02-1_0 336 1.06e-120 1..166 1..166
AcvGPx06-2 263 8.5e-92 3..166 2..165
GgGPx06 258 6.27e-90 2..166 3..166
MtGPx06 256 4.77e-88 1..166 67..231
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 785443..785490 46 N° 2 785309..785385 75 N° 3 785194..785255 60 N° 4 785022..785140 117
N° 5 784792..784962 169 N° 6 784714..784792 77  
complement(join(784714..784792,784792..784962,785022..785140,785194..785255,7853 09..785385,785443..785490))


exon

Literature and cross-references SmGPx02-2_57 (SmGPx02b_57)
DNA ref. JGI genome:   scaffold_57 (785490..784714)
mRNA ref. JGI transcript:   118012 [Incorrect prediction]
EST ref. GenBank:   FE462082.1
Cluster/Prediction ref. UniGene:   Smo.1482
Protein sequence: SmGPx02-2_57 (SmGPx02b_57)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   166 (295)
PWM (Da):   %s   18271.28 (31475.5) Transmb domain:   %s   i7-29o
PI (pH):   %s   8 (6.23) Peptide Signal:   %s   cut: 23 range:23-317
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSSSDKPSSIYDITVKDATGNDVSLGSYKDKVLLIVNVASQCGFTTTNYKELNELYEKYKDKGFEILAFPCNQFAGQEPGSNEEIQQTVCTRFKAEFPVFGKVNVNGADTAPVFKYLKSA
KGGGIFGDFIKWNFSKFLVSKTGEVVERYAPTTNPSKIEKDILKLL

Retrieve as FASTA  
Remarks Complete sequence from genomic (5 introns) and ESTs. Incorrect prediction from JGI
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGCTCTTCGGATAAGCCCTCTAGCATCTACGACATTACTGTCAAGGTTCGCTCGTTTATACATCTCTCCAATTGTCTAGAAGTTCTTCCCATTGTTTTACAGGAGATGCTACAGGAA
ACGATGTTTCTCTCGGCAGCTACAAGGACAAAGTTCTCCTGATTGTAAACGTTGCATCGCAATGGTATGTTTGTTGTCAATCGAGGTGTGCTCTAACCGGTTTTTCTTCTTCGGCAGTGT
GGCTTCACTACAACCAATTACAAAGAACTCAACGAGCTCTACGAGAAGTACAAGGACAAGGGTATGAATTTCTTTTTTCTGGCTGTGAAACTTATGAGCTCTCTCTGACTCCAGGCGCTT
TGAGATCCTGGCCTTTCCGTGTAACCAGTTTGCCGGGCAAGAGCCTGGCTCTAACGAAGAAATCCAGCAAACCGTGTGTACTCGATTCAAGGCCGAGTTCCCGGTTTTTGGGAAAGTAAG
TGGTGATTATCTTTTCAGTTCTCTCCTAATTTTTCCATCGTGGTGTTGTGTCAGGTGTGAACGTGAATGGAGCAGACACAGCTCCTGTTTTTAAGTACCTCAAGTCTGCCAAGGGTGGGG
GCATTTTCGGCGACTTTATCAAGTGGAACTTCAGCAAGTTTCTGGTGAGCAAGACTGGTGAAGTTGTTGAGCGCTATGCTCCAACTACAAACCCATCCAAAATCGAGGGGTCAATTTCTT
GCCGCGCTACTCTCTTTCGGTGCACTAACTTCTTTTCTTGCAGAAGGATATCCTGAAGCTTCTGTGA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CGCAATCCAG ACACAAGAAT CCACAGCTAG TTTTTAACGT ACCAGCGAAT GATACTTAGT GCATATTCCT CATATATATC GTTGGTTCTT GTGCTCTTGG TATCTTTGTA TTGGAGGAAC  CCTTCGCTTT TTCACGACTC TGCAAGAATC TTCTCGCCGA ATTATCGGAA CATGAGCTCT TCGGATAAGC CCTCTAGCAT CTACGACATT ACTGTCAAGG ATGCTACAGG AAACGATGTT  TCTCTCGGCA GCTACAAGGA CAAAGTTCTC CTGATTGTAA ACGTTGCATC GCAATGTGGC TTCACTACAA CCAATTACAA AGAACTCAAC GAGCTCTACG AGAAGTACAA GGACAAGGGC  TTTGAGATCC TGGCCTTTCC GTGTAACCAG TTTGCCGGGC AAGAGCCTGG CTCTAACGAA GAAATCCAGC AAACCGTGTG TACTCGATTC AAGGCCGAGT TCCCGGTTTT TGGGAAAGTG  AACGTGAATG GAGCAGACAC AGCTCCTGTT TTTAAGTACC TCAAGTCTGC CAAGGGTGGG GGCATTTTCG GCGACTTTAT CAAGTGGAAC TTCAGCAAGT TTCTGGTGAG CAAGACTGGT  GAAGTTGTTG AGCGCTATGC TCCAACTACA AACCCATCCA AAATCGAGAA GGATATCCTG AAGCTTCTGT GAGCTTCGTG TGTGAnAGCA AAGGTACACC AGTAAAGTTA CAATAAAGAA 
AGGCTATCAT CGTCTGTGAG TG 

Retrieve as FASTA