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Entry information : AlyRboh08 (AlyRbohH)
Entry ID 7578
Creation 2010-08-11 (Christophe Dunand)
Last sequence changes 2010-08-11 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-24 (Marie Brette (Scipio))
Peroxidase information: AlyRboh08 (AlyRbohH)
Name (synonym) AlyRboh08 (AlyRbohH)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh003]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyRboh08
start..stop		 S start..stop
AtRboh08 1842 0 1..886 1..886
NoffRboh08-1A 1737 0 1..886 1..887
TsRboh08 1725 0 1..886 1..889
ThasRboh10 1520 0 5..886 7..900
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '7578' 'join(19358438..19358891,19359087..19359249,19359334..19359496,19359647..19360450,19360538..19360636,19360772..19360887,19360970..19361072,19361238..19361344,19361465..19361624,19361728..19361901,19362019..19362147,19362354..19362432,19362542..19362651)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 19358438..19358891 452 N° 2 19359087..19359249 161 N° 3 19359334..19359496 161 N° 4 19359647..19360450 802
N° 5 19360538..19360636 97 N° 6 19360772..19360887 114 N° 7 19360970..19361072 101 N° 8 19361238..19361344 105
N° 9 19361465..19361624 158 N° 10 19361728..19361901 172 N° 11 19362019..19362147 127 N° 12 19362354..19362432 77
N° 13 19362542..19362651 108  
join(19358438..19358891,19359087..19359249,19359334..19359496,19359647..19360450 ,19360538..19360636,19360772..19360887,19360970..19361072,19361238..19361344,193 61465..19361624,19361728..19361901,19362019..19362147,19362354..19362432,1936254 2..19362651)


exon

Literature and cross-references AlyRboh08 (AlyRbohH)
DNA ref. Phytozome 12:   scaffold_8 (19358438..19362651)
Protein sequence: AlyRboh08 (AlyRbohH)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   886
PWM (Da):   %s   100482.43 Transmb domain:   %s   i316-333o400-419i455-477o497-519i692-709o
PI (pH):   %s   9.57
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MKNNIPTEDSTKWMLESVEIDSMGEGSSKEPEINLNKNEGGLKKNASRNLGVGSIIRTLSVSNWRKSGNLGSPSTRKSGNLGPPTNAVPKKTGPQRVERTTSSAARGLQSLRFLDRTVTG
RERDAWRSIENRFNQFSVDGKLPKEKFGVCIGMGDTMEFAAEVYEALGRRRQIETENGIDKEQLKLFWEDMIKKDLDCRLQIFFDMCDKNGDGKLTEEEVKEVIVLSASANRLGNLKKNA
AAYASLIMEELDPDHKGYIMWQLEILLTGMVTNADTEKMKKSQTLTRAMIPERYRTPMSKYVSVTAELMHENWKKLWVLALWAIINVYLFMWKYEEFMRNPLYNITGRCVCAAKGAAETL
KLNMALILVPVCRKTLTILRSTFLNRVVPFDDNINFHKVIAYMIAFQSLLHTALHIFCNYPRLSSCSYDVFLTYAGAALGNTQPSYLGLMMTSVSITGVLMIFFMGFSFTLAMHYFRRNI
VKLPKPFNVLAGFNAFWYAHHLLVLAYILLIIHGYYLIIEKPWYQKTTWMYLAVPMLFYASERLFSRLLQEHSHRVNVIKAIVYSGNVLALYVTKPPGFRYKSGMYMFVKCPDLSKFEWH
PFSITSAPGDDYLSVHIRALGDWTTELRSRFATCEPPQAAAKPKPNSLMRMETRAAGVNPHIEESQVLFPKIFIKGPYGAPAQNYQKFDILLLVGLGIGATPFISILKDMLNHLKPGIPRGQKYEGSVGGESIGGDSVSGGGGKKFPQRAYFFWVTREQASFDWFKGVMDDIAEYDKTHVIEMHNYLTSMYEAGDARSALIAMVQKLQHAKNGVDIVSESRIRTHFARPNWRKVFSELSS
KHEACRIGVFYCGSPTLVRPLKELCQEFSLESSTRFTFHKENF

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 8, 12 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAAAATAACATTCCTACCGAGGATTCGACAAAATGGATGTTAGAGAGTGTAGAGATCGATTCAATGGGTGAAGGTTCGTCCAAAGAACCCGAAATTAACCTCAACAAGAATGAAGGT
GGTCTGAAGAAGAATGCGTCAAGAAATCTCGGCGTGGGATCGATAATCCGAACGTTAAGCGTTTCAAACTGGAGAAAGAGCGGGAATCTAGGCTCTCCGAGCACAAGGAAAAGTGGGAAC
CTGGGGCCTCCGACCAATGCCGTGCCCAAGAAGACAGGTCCACAAAGAGTGGAGAGGACAACATCTAGCGCCGCTAGGGGACTTCAGAGCTTACGGTTCCTTGATCGGACAGTCACCGGA
CGAGAACGAGATGCATGGAGGTCGATTGAGAATCGATTTAATCAGTTTTCTGTCGATGGCAAATTGCCTAAAGAGAAATTCGGCGTCTGCATTGTGGTAATTGATAGAAGTACTAATAGT
TTAAAAGTGTTCCACATATTATATGTCAGATCCTTTTTGATTCATCGTGATTTTTTTTGGAAACGATGACTCTTTTTGACATAGGTATCTTCAAGTTGGATTATTAACGACGATTTTTTT
TGTATTGTTGGTTTAAAAATAAAATTTAACGTTGATGGTATACATTACTAGGAATGGGAGACACGATGGAGTTTGCTGCAGAAGTTTATGAGGCATTGGGTCGGAGAAGACAAATAGAGA
CAGAAAACGGTATCGACAAAGAACAACTCAAGCTGTTTTGGGAAGACATGATCAAGAAAGACCTTGATTGTCGTCTTCAGATCTTTTTCGACATATGTAATTTACTTAATCTTATATGTT
TCCATATATATACAAGTGCGCTTAATTGATTTAGGCATTATGGTTGTGGTTGTTGTTTAGGTGTGACAAGAACGGAGATGGTAAGCTCACAGAAGAGGAAGTGAAAGAGGTCATAGTCTT
GAGCGCCTCCGCGAACCGCCTAGGGAATTTGAAAAAGAACGCTGCGGCTTACGCGTCTTTGATCATGGAAGAACTCGACCCCGATCACAAAGGATACATAGAGAGGTTCACTTTTTCTTT
CTATTTTTAATATCCGTTTGATATAACAGTCGAATATATAATATTCTTTCAAAATTCAAACGATTTTTTTTTATACCTTATCCAGACAAATATAGAGATTTATGTTCTAACCATTTCGTA
GTTTATATCTACCAGATGTGGCAGTTAGAGATACTATTAACAGGAATGGTGACAAACGCTGATACAGAGAAGATGAAGAAATCTCAAACGCTGACACGCGCAATGATCCCAGAGCGTTAC
AGAACGCCGATGAGCAAATACGTTTCAGTAACCGCAGAACTGATGCACGAGAATTGGAAAAAATTATGGGTACTCGCTTTGTGGGCCATCATCAACGTCTATCTATTCATGTGGAAGTAC
GAAGAGTTTATGAGAAACCCTCTCTACAACATCACCGGACGCTGCGTTTGCGCAGCTAAAGGTGCGGCCGAAACGCTGAAACTCAACATGGCTCTGATTTTGGTCCCGGTCTGTAGAAAA
ACCCTAACGATCCTTAGGTCAACGTTTTTGAACCGTGTGGTCCCATTCGACGACAACATAAACTTCCACAAGGTGATTGCGTATATGATCGCGTTCCAGTCTTTGCTTCACACGGCACTT
CACATCTTCTGTAACTACCCTAGGTTAAGCTCGTGCTCTTACGACGTGTTCTTGACGTACGCGGGAGCTGCCTTGGGAAACACGCAACCGAGTTACCTAGGTTTAATGATGACGTCAGTG
TCGATCACGGGAGTTTTAATGATATTCTTCATGGGATTCTCGTTTACACTGGCCATGCATTATTTTAGAAGGAACATAGTGAAATTGCCTAAACCGTTTAACGTTCTTGCTGGGTTTAAT
GCGTTTTGGTATGCTCATCATTTGTTGGTTCTTGCTTATATTCTTCTCATCATCCATGGTTACTATCTTATCATCGAGAAGCCTTGGTACCAGAAGACGCGGTAAGTAAGATGTATTTTT
TTAATATAGAATATTTGTGCATTATCATTTTTAAAATCCTTTTTTTTTGTTGGTAAATTGAAATGCAGACATGGATGTATTTGGCCGTGCCGATGCTGTTCTACGCGAGTGAGAGGCTAT
TCTCACGTCTCCTTCAAGAACACAGCCATCGTGTCAACGTTATTAAGAGGTACTAAAAAAGGCTAATTAATTCATCAAAATATTTACGATAACATTTCGTAATGACTAATTTTGGGCCTA
TATATAGTAGTTTTTAATAAATTTGTTTTTTTTTTCCATGTTTTCTGTCACTTTTATTATGTAGGCTATTGTATATTCGGGCAACGTTCTTGCACTTTACGTAACCAAACCTCCAGGGTT
CAGATACAAAAGTGGCATGTACATGTTTGTCAAGTGTCCTGATCTCTCAAAATTTGAATGTGGTAATCTAAATAATACTAAATACTTGATTAAAGTTCATACTTTAAGTAACTAGTGATA
TTTATTTTACTTTATTATTATTAGGCATCCGTTCTCAATCACTTCTGCACCAGGAGATGATTATTTAAGTGTTCACATTAGAGCCTTGGGAGATTGGACCACTGAACTTAGGAGCAGATT
CGCAAAGAGGTAATTGTCACTCTTTATTTTTCTAATTAAAATTTTCACTGTACTTGTAATATTGGTCTTTCATGGTAATTATCCTAGCTAACATAAATCTTATTTTATCAGAGGTTAGAA
AACATAAAATTTAATTTAAGTGTAAATTATTAAAAAAATTCTGTTTGATTGTAGACATGCGAGCCTCCTCAAGCAGCCGCAAAACCTAAACCAAACAGTCTTATGAGGATGGAAACAAGA
GCTGCGGGTGTGAATCCTCACATTGAAGAATCACAAGTCTTTTGTAAGTGAATACTAAACTAATAACTACCAACTAAATGCATATTATTTTGCAAGAAGATGAGTATGTTCATATAAACG
GTGTTTTTAAATTGGATCTGATCGAGTCGTTTTTTCGTAACAGATTCCCAAAAATATTCATCAAAGGACCTTATGGAGCTCCGGCACAAAATTATCAGAAGTTCGATATCCTCTTACTAG
TTGGACTAGGGATAGGGGCAACTCCATTCATAAGCATTTTGAAAGACATGTTAAACCATCTAAAACCTGGGATTCCCAGAAGTGTGTAAGTAGTATGAACATTTTTGTCTTCATATTTGA
GGTTGCATATGAAGGAAAAGAATCATAATGGGGGTCTACATTTTTTGAATATTGGGAAATATATATAGGGGCAAAAGTACGAAGGAAGTGTAGGAGGAGAGAGTATAGGAGGTGATAGTG
TTAGTGGTGGAGGAGGAAAGAAGTTTCCGCAAAGAGCATATTTTTTTTGGGTGACAAGAGAACAAGCTTCCTTTGATTGGTTCAAGGGAGTTATGGATGACATCGCCGAGTATGATAAAA
CCCCGTAAGTTTATTGATTCATTTTACTACATTCTTGTTTTTTTCATAATGGGGTTTATGAATTGCTATAACAAAATAATACGTTTTACAAGTTTCCCAAATAATGTTTTTATTTTGGCA
GCATGTGATAGAAATGCATAACTACTTAACAAGCATGTACGAAGCGGGAGATGCAAGATCTGCCCTAATCGCCATGGTTCAGAAACTTCAACATGCCAAGAACGGTGTTGATATTGTCTC
CGAAAGCCGGGGGTAAGTTTTAGTTAATAACCAAAACCATTATATGAGTTCTCCACTTTAGATTTCGGTTTAAGAACATATTGAATCATTTTGGAGTTAACGTTAAGCACTCCTAAAGGA
CTTACAAGTATCTTACTTATATTAGCACTCCTTAAGGAGTTACAAGTATTTTAATTATATAATTAATTAATCTTATGTATCCTATAAAAACAAATCAGATACGAACACATTTCGCAAGAC
CTAATTGGAGGAAGGTTTTTTCTGAGTTATCAAGCAAACACGAAGCTTGTCGAATAGAGGTAATTATATATTAAATAGTTATTGTCAACCTTTCTTTTACTCTGTAAACGATCTTAATTT
GCTTAAAGCTTTCTACTTTCAAATAATTCTTACCTTGTGTATTTTCAGGTGTATTCTACTGTGGAAGTCCAACACTGGTTCGACCACTTAAAGAACTTTGTCAGGAGTTTAGTCTCGAGT
CTTCCACTCGTTTTACTTTCCACAAGGAAAACTTTTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAAAATAACATTCCTACCGAGGATTCGACAAAATGGATGTTAGAGAGTGTAGAGATCGATTCAATGGGTGAAGGTTCGTCCAAAGAACCCGAAATTAACCTCAACAAGAATGAAGGT
GGTCTGAAGAAGAATGCGTCAAGAAATCTCGGCGTGGGATCGATAATCCGAACGTTAAGCGTTTCAAACTGGAGAAAGAGCGGGAATCTAGGCTCTCCGAGCACAAGGAAAAGTGGGAAC
CTGGGGCCTCCGACCAATGCCGTGCCCAAGAAGACAGGTCCACAAAGAGTGGAGAGGACAACATCTAGCGCCGCTAGGGGACTTCAGAGCTTACGGTTCCTTGATCGGACAGTCACCGGA
CGAGAACGAGATGCATGGAGGTCGATTGAGAATCGATTTAATCAGTTTTCTGTCGATGGCAAATTGCCTAAAGAGAAATTCGGCGTCTGCATTGGAATGGGAGACACGATGGAGTTTGCT
GCAGAAGTTTATGAGGCATTGGGTCGGAGAAGACAAATAGAGACAGAAAACGGTATCGACAAAGAACAACTCAAGCTGTTTTGGGAAGACATGATCAAGAAAGACCTTGATTGTCGTCTT
CAGATCTTTTTCGACATGTGTGACAAGAACGGAGATGGTAAGCTCACAGAAGAGGAAGTGAAAGAGGTCATAGTCTTGAGCGCCTCCGCGAACCGCCTAGGGAATTTGAAAAAGAACGCT
GCGGCTTACGCGTCTTTGATCATGGAAGAACTCGACCCCGATCACAAAGGATACATAGAGATGTGGCAGTTAGAGATACTATTAACAGGAATGGTGACAAACGCTGATACAGAGAAGATG
AAGAAATCTCAAACGCTGACACGCGCAATGATCCCAGAGCGTTACAGAACGCCGATGAGCAAATACGTTTCAGTAACCGCAGAACTGATGCACGAGAATTGGAAAAAATTATGGGTACTC
GCTTTGTGGGCCATCATCAACGTCTATCTATTCATGTGGAAGTACGAAGAGTTTATGAGAAACCCTCTCTACAACATCACCGGACGCTGCGTTTGCGCAGCTAAAGGTGCGGCCGAAACG
CTGAAACTCAACATGGCTCTGATTTTGGTCCCGGTCTGTAGAAAAACCCTAACGATCCTTAGGTCAACGTTTTTGAACCGTGTGGTCCCATTCGACGACAACATAAACTTCCACAAGGTG
ATTGCGTATATGATCGCGTTCCAGTCTTTGCTTCACACGGCACTTCACATCTTCTGTAACTACCCTAGGTTAAGCTCGTGCTCTTACGACGTGTTCTTGACGTACGCGGGAGCTGCCTTG
GGAAACACGCAACCGAGTTACCTAGGTTTAATGATGACGTCAGTGTCGATCACGGGAGTTTTAATGATATTCTTCATGGGATTCTCGTTTACACTGGCCATGCATTATTTTAGAAGGAAC
ATAGTGAAATTGCCTAAACCGTTTAACGTTCTTGCTGGGTTTAATGCGTTTTGGTATGCTCATCATTTGTTGGTTCTTGCTTATATTCTTCTCATCATCCATGGTTACTATCTTATCATC
GAGAAGCCTTGGTACCAGAAGACGACATGGATGTATTTGGCCGTGCCGATGCTGTTCTACGCGAGTGAGAGGCTATTCTCACGTCTCCTTCAAGAACACAGCCATCGTGTCAACGTTATT
AAGGCTATTGTATATTCGGGCAACGTTCTTGCACTTTACGTAACCAAACCTCCAGGGTTCAGATACAAAAGTGGCATGTACATGTTTGTCAAGTGTCCTGATCTCTCAAAATTTGAATGG
CATCCGTTCTCAATCACTTCTGCACCAGGAGATGATTATTTAAGTGTTCACATTAGAGCCTTGGGAGATTGGACCACTGAACTTAGGAGCAGATTCGCAAAGACATGCGAGCCTCCTCAA
GCAGCCGCAAAACCTAAACCAAACAGTCTTATGAGGATGGAAACAAGAGCTGCGGGTGTGAATCCTCACATTGAAGAATCACAAGTCTTATTCCCAAAAATATTCATCAAAGGACCTTAT
GGAGCTCCGGCACAAAATTATCAGAAGTTCGATATCCTCTTACTAGTTGGACTAGGGATAGGGGCAACTCCATTCATAAGCATTTTGAAAGACATGTTAAACCATCTAAAACCTGGGATT
CCCAGAAGTGGGCAAAAGTACGAAGGAAGTGTAGGAGGAGAGAGTATAGGAGGTGATAGTGTTAGTGGTGGAGGAGGAAAGAAGTTTCCGCAAAGAGCATATTTTTTTTGGGTGACAAGA
GAACAAGCTTCCTTTGATTGGTTCAAGGGAGTTATGGATGACATCGCCGAGTATGATAAAACCCATGTGATAGAAATGCATAACTACTTAACAAGCATGTACGAAGCGGGAGATGCAAGA
TCTGCCCTAATCGCCATGGTTCAGAAACTTCAACATGCCAAGAACGGTGTTGATATTGTCTCCGAAAGCCGGATACGAACACATTTCGCAAGACCTAATTGGAGGAAGGTTTTTTCTGAG
TTATCAAGCAAACACGAAGCTTGTCGAATAGGTGTATTCTACTGTGGAAGTCCAACACTGGTTCGACCACTTAAAGAACTTTGTCAGGAGTTTAGTCTCGAGTCTTCCACTCGTTTTACT
TTCCACAAGGAAAACTTTTAA

Retrieve as FASTA