Sequence Properties
first value : protein
second value (mature protein) |
Length (aa):  |
319 |
| PWM (Da): |
34843.93 |
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| PI (pH): |
8.83 |
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Sequence
Send to BLAST
Send to Peroxiscan
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| *.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
DPDFYAQTCP KAPAIVKAAI VRATKADVTN PGPLLRLFFH DCFVGPDNSG CGACDASVLL NHTGSEQEAL PNLSLTDFDI VESIKAELEA KCPGVVSCAD LLALVARFAI VVSRGPDIRI
PLGRRDSTKR ALKANAERCL PSHFSGVTGL VRNFQNVGLG LADVINLSGA HTIGQAHCSN IQDRLYNRTG AKRLDPTLDS AYAKRVLYPT CPSFKAKVPA SVEDIDAEGQ TFQDPITSVR
FDNKYYVALT KRQGLFTSDQ QLFLDDRSRE LVKKYASNQN AFFKGFEESM IRMGNIKVLT GREGVIRKFC FRNKVSRSS
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Retrieve as FASTA
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| Remarks |
Partial seqeunce from ESTs (corb-UMD_Coleochaete_c11399_c_s and >corb-UMD_Coleochaete_c11802_c_s(in DNA window)). Short PS is missing. 7 extra aa between FHDC and DAS. 5' end is missing. |
DNA ►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
CGGCTGGACC CCACGCTGGA CAGTGCCTAT GCGAAGCGCG TGCTCTACCC ACGTGTCCGA GCTTCAAAGC CAAGGTGCCC GCGTCGGTCG AAGACATCGA CGCGGAGGGG CAGACGTTCC
AGGATCCGAT CACGAGCGTG AGGTTCGACA ACAAGTACTA CGTCGCTCTG ACAAAAGCGG CAGGGCCTTT TCACGTCGGA CCAGCAGCTG TTTCTGGATG ACCGCAGCCG GGAGCTCGTG
AAGAAATACG CGTCCAACCA GAATGCGTTC TTCAAAGGAT TCGAGGAGTC CATGATAAGG ATGGGGAACA TAAAGGTTTT GACGGGGAGG GAGGGAGTCA TCCGGAAGTT TTGCTTCCGG
AACAAGTAAG AGAGTGGTTG ACTGAGATAG CGCGCCTTTG CTTGAGGCCT TGACTGTGTT CCCCAGTTTT CTTCCCCCTG TCAAGGAAAA ATAAATCACT CAATCAGTGT GGAATTTTGT
AAACTTTATT TAAAGCTGCT GGGAAGCGCT CGCGGGCGTC TTCATCGGTG CATGGGCAAT GCAGCGTTGG TACTGCTATG TACGACTATA TTATGAGTCT TTTTGGATGC ACAGCGGTCA
CAAGTGATAC TACTCAGAGG TAGTAGTAGT AAAACATATG CACTGAGCGG AGTCGATTTT GTGAACTTCT GTTAAAAAAT ATGTATGTTT TGTATCTGTA ATGGACTTAT GTATTGAAAA
TGAAATTATG TACTTG
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Retrieve as FASTA
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CDS►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
| GATCCTGACT TCTACGCCCA GACCTGCCCC AAAGCCCCCG CCATTGTAAA AGCCGCGATC GTCCGCGCCA CGAAAGCTGA CGTCACCAAC CCGGGCCCGC TCCTCCGCCT CTTCTTCCAC
GACTGCTTCG TGGGACCCGA CAATAGCGGC TGCGGGGCCT GCGACGCCTC TGTGCTGCTC AACCACACGG GCTCCGAGCA GGAGGCTCTC CCCAACCTCT CCCTCACGGA CTTTGACATC
GTCGAGAGCA TCAAAGCGGA ACTCGAAGCA AAGTGCCCCG GCGTGGTCTC ATGCGCCGAC CTCCTCGCCC TGGTGGCGCG CTTCGCGATA GTCGTGTCGC GCGGCCCCGA CATACGAATC
CCTCTCGGCC GACGAGATTC CACCAAGCGA GCGCTCAAGG CCAACGCCGA GAGATGCCTC CCCTCCCACT TCTCGGGCGT CACGGGCCTC GTGCGCAATT TTCAGAATGT CGGTCTCGGC
CTCGCGGATG TGATCAACCT CTCGGGGGCG CACACGATAG GGCAGGCCCA CTGCAGCAAC ATCCAGGACC GGCTCTACAA CAGGACCGGG GCAAAGCGGC TGGACCCCAC GCTGGACAGT
GCCTATGCGA AGCGCGTGCT CTACCCCACG TGTCCGAGCT TCAAAGCCAA GGTGCCCGCG TCGGTCGAAG ACATCGACGC GGAGGGGCAG ACGTTCCAGG ATCCGATCAC GAGCGTGAGG
TTCGACAACA AGTACTACGT CGCTCTGACA AAGCGGCAGG GCCTTTTCAC GTCGGACCAG CAGCTGTTTC TGGATGACCG CAGCCGGGAG CTCGTGAAGA AATACGCGTC CAACCAGAAT
GCGTTCTTCA AAGGATTCGA GGAGTCCATG ATAAGGATGG GGAACATAAA GGTTTTGACG GGGAGGGAGG GAGTCATCCG GAAGTTTTGC TTCCGGAACA AGGTCTCACG GTCTAGCTGA
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Retrieve as FASTA
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cDNA►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
CGGGGATCCT GACTTCTACG CCCAGACCTG CCCCAAAGCC CCCGCCATTG TAAAAGCCGC GATCGTCCGC GCCACGAAAG CTGACGTCAC CAACCCGGGC CCGCTCCTCC GCCTCTTCTT
CCACGACTGC TTCGTGGGAC CCGACAATAG CGGCTGCGGG GCCTGCGACG CCTCTGTGCT GCTCAACCAC ACGGGCTCCG AGCAGGAGGC TCTCCCCAAC CTCTCCCTCA CGGACTTTGA
CATCGTCGAG AGCATCAAAG CGGAACTCGA AGCAAAGTGC CCCGGCGTGG TCTCATGCGC CGACCTCCTC GCCCTGGTGG CGCGCTTCGC GATAGTCGTG TCGCGCGGCC CCGACATACG
AATCCCTCTC GGCCGACGAG ATTCCACCAA GCGAGCGCTC AAGGCCAACG CCGAGAGATG CCTCCCCTCC CACTTCTCGG GCGTCACGGG CCTCGTGCGC AATTTTCAGA ATGTCGGTCT
CGGCCTCGCG GATGTGATCA ACCTCTCGGG GGCGCACACG ATAGGGCAGG CCCACTGCAG CAACATCCAG GACCGGCTCT ACAACAGGAC CGGGGCAAAG CGGCTGGACC CCACGCTGGA
CAGTGCCTAT GCGAAGCGCG TGCTCTACCC CACGTGTCCG AGCTTCAAAG CCAAGGTGCC CGCGTCGGTC GAAGACATCG ACGCGGAGGG GCAGACGTTC CAGGATCCGA TCACGAGCGT
GAGGTTCGAC AACAAGTACT ACGTCGCTCT GACAAAGCGG CAGGGCCTTT TCACGTCGGA CCAGCAGCTG TTTCTGGATG ACCGCAGCCG GGAGCTCGTG AAGAAATACG CGTCCAACCA
GAATGCGTTC TTCAAAGGAT TCGAGGAGTC CATGATAAGG ATGGGGAACA TAAAGGTTTT GACGGGGAGG GAGGGAGTCA TCCGGAAGTT TTGCTTCCGG AACAAGGTCT CACGGTCTAG
CTGAGAGACT GGTAGGCnTG CnnGTGTGGT GCGTGAGGAT CGTnnnGnGn nAATTTTGCT GTGATGGAGT GGAGAATGTT GCTCATTTTT GTTGGACATG TCCTCTGTAT AACGTCATGA
GAGAAACCTT CGATGCTGAC TTGGAAACTT GCATAGGATC TGGTCATTTT GCTGCTATTG TGTCTTGTGA TGTTGATGAA AGGACCTTGA TGGTTTTGAG TCATGAACGC TGGGGAGATG
CTGCTAACCC TCTTGATGCT GGTTTGCAGA AACATCTGAT GGATGCATGG GTGTGACGTT GTAGGCATGA GTACAACGAG AAATCATTCT ACAAAAACAT GAATGTGGTT TGCACTGGGC
TGATATTCAG CGCGAGGCCA ATGGTCCATT GACTACAGCA GGTAATATAC CAATGCTGAT TCTCTCTCTC TCTCTGTCTC
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Retrieve as FASTA
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