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Entry information : VcaAPx-R (62034)
Entry ID 8357
Creation 2011-05-02 (Christophe Dunand)
Last sequence changes 2011-11-29 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-11-28 (Qiang Li)
Peroxidase information: VcaAPx-R (62034)
Name (synonym) VcaAPx-R (62034)
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Viridiplantae Chlorophyta Chlorophyceae Volvocaceae Volvox
Organism Volvox carteri    [TaxId: 3067 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VcaAPx-R
start..stop		 S start..stop
CreAPx-R 346 1.62e-119 83..324 93..337
PtaAPx-R01 249 4.6e-82 43..320 9..279
NoffAPx-R01-1B 249 9.65e-82 89..319 93..320
BoAPx-R-1Ca_other 249 2.45e-81 94..319 96..319
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8357' 'join(873628..873715,874070..874299,875162..875308,875850..876069,876625..876893)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 873628..873715 86 N° 2 874070..874299 228 N° 3 875162..875308 145 N° 4 875850..876069 218
N° 5 876625..876893 267  
join(873628..873715,874070..874299,875162..875308,875850..876069,876625..876893)


exon

Literature and cross-references VcaAPx-R (62034)
DNA ref. Phytozome 12:   scaffold_27 (873628..876893)
Protein sequence: VcaAPx-R (62034)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   325 (314)
PWM (Da):   %s   34565.86 (33833.1)  
PI (pH):   %s   7.41 (6.74) Peptide Signal:   %s   cut: 22 range:22-335
Sequence
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Send to Peroxiscan
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MKYVHLICKIKCELLHRVFVGVPSLLCDGCHDRDQTKEQPALSRRQVLGLSAPLLGALIGGVLPSIGQLVATAPATAAAISVPVTPSREVKAALNKALARAIPKAKTAVALRLVFHDAGT
FSFPPGNGGLNASIQYELDRPENAGLKRGWRIIEQVRVCMFVCGVATDADLVALAGAYAVRLCGGPDIALALGRPVAAAASPDPPDRMPGENFTAEQLKANFAAKGLSVQEMVALSGAHT
LGSKGFGDPTRFDNEYYRALLRRPWTNPNDSMASMIGLPSDHVLPDDPECLPYIERYAEDQDAFFADFAAAYVKLTSLGVPGWAV*

Retrieve as FASTA  
Remarks Complete sequence from DNA (4 introns). Incorrect prediction from Phytozome (first exon is missing). Problem to predict the 5'end. No EST.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAATATGTTCACCTGATCTGCAAAATAAAATGCGAATTGCTGCACAGAGTGTTTGTTGGCGTTCCGTCACTGCTGTGCGATGGTTTTGTCAGTCTGATCAGACCCCGTATGCCCCGT
ACTCGACTCTCCTTTCGGGAACTCTCAAGTTCCCGCGTCGCATTTCACTTCAATTTTGGATAGCCCGATCCGTGCACTGTCACACTCATTAGCTATGTTTGGCGTTCTGCATCGCCCACC
GTGCCCCGATACTCTCGCCAGCCGAACACCTGGCGCGAAACAACGCAATCCTCTTCTGATTAGAGCGGATGTAGCGCATCAGGCCCGCGTCCCATCGACAGGTCAGGTCCCAGTCAGCTC
TTGCAATCTCGTCGCGAGGAGCCGGACAGTCATCGAAATGGTCCGGTCAGCAACACGCTCCCCATCGCGGTCTTTTGCACGCAGGCCATGACCGGGATCAGACTAAAGAGCAGCCAGCTC
TTTCCAGGCGCCAGGTACTGGGTCTTTCTGCGCCGCTGCTGGGCGCATTAATTGGTGGAGTGCTGCCGTCCATTGGCCAGCTGGTCGCCACAGCCCCCGCCACCGCCGCTGCTATTTCTG
TCCCAGTTACTCCCTCCAGGGAAGTCAAGGCAGCCCTCAACAAGGCGCTAGCCCGGGCCATCCCCAAGGCCAAGAGGTGGGTGGGCCAAGTAGGCACGAACGATTGAAAGGAGGGAGACG
CCGCACAGACCGAGAACGTGGGCGGGGATTGGAGGTAACGGCCTGAAATTCAAACTGCGTTTCGGTGCGAGGCGGGTAATCCGAGGTAATGCGATATGTCAATAAAGCAACAGCCAGGTG
TGGCTTAGGAAGGAAGGATGCCCCAGCTTTTCAACCCACGACACACGACATGAGAGGAGGGCGGGGGAAAGAGAGGGTGGGGTGAAGTGGGAGAGATAGATAGGAAGGAGAGCTGCAGTC
CTTCCAGGCCTCTCATCCTGGTTACCCTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCACAGCAACCACTGATGTGTACGGGTATGGAGCTGC
GGTGGGGCGAGGACATGGCCACACCCCTCCCTCCAGTCTTCCGTTCATCCAGTCCTCCACCTCCCTGCGCCCACCGACCTCCGCCCCAAGTGCCCCATCCCCGGGGGTGGGTGGGTACCT
AGTGCGCAGTGCCCCCCCCTGTGCACCGGGGTACTGGCGTACGGCTTACCCGGCTGCTACGGACTGACGATAGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTCGTCATGTTCATCTGCCATCCCGGGCCCCACCACCCCTAACCCCGCCACCGGCACTCTTGGGCCTCGACGGCGTCCGCCCCACCGCATCACCGCTTCAGCCCCGCAATGTGTCGT
ATGCGTGCGTGCGGGCTTCGTCGTCACGGCTGAATGCGTCTTACTTTCCTTGCCTCCCCCCCCCCACCTCACCCGCATGCACATACACATACGTACAGACGGCCGTGGCGCTGCGACTTG
TGTTTCACGACGCGGGCACCTTCAGCTTTCCCCCGGGGAACGGGGGGCTGAACGCCTCCATACAGTACGAACTGGACCGCCCTGAAAATGCGGGGCTGAAGAGGGGGTGGAGGATCATAG
AGCAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTTTGGGGTAAGGCAAGGGAGGGGAAGGACAGTCCCAGCAGGGTAACCCCCTGTCCGGGTGCGTGTGGCGGCGT
GGGTGCGCCTGGCACCCGCCCCTAGGGGGTGGGACTTCATCCATCCTCGAATGCAATGGCACGGCGACTATGCGGTGGTGGTTCGTATGTGGCTGAGCTGGCTCAGGGTTATTTCCTTAG
ACCCCAACAACCCACCAATACACAATTNNNNNNNNNNNNNNNNNNNNNNNNTTCCTTCCCCCTTCACGTAGGGTCTCGCTCTGTTTGGGGCTCATTACGTATCTCATATGCCCACCAACT
GATGTGTATGTTCCCCCTGTCTATCTATCTATCTATCCGTCAGGCCCATTCTTCCTCTCCCCCCGCGGCATCACTTCCTCAACCCCTCACGTCCCCGCCCGAANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTCCCCCTCCCCGGCCCCCCTCAGGTCCGTGATGAGCTGCGGGGTACCCCCGCCGAGGGTGTTGCGACGGATGCGGACCTGGTGGCTCTAGCTGGGGCTTATGCGGTGC
GGCTGTGTGGGGGCCCGGACATCGCTCTGGCGCTGGGCAGGCCGGTGGCGGCGGCGGCCTCCCCCGACCCCCCGGACCGCATGCCCGGAGAGAACTTCACCGCGGAGCAGCTCAAGGCCA
ACTTCGCGGCCAAGGGGCTGAGCGTGCAGGAGATGGTGGCGCTGTCGGGGGTAGGGGGGGGGTAGGGAGCGGTTGGGATGAGGGAAGGAGGAGGGAGGGGGTAAGCTAAGCGGGGTTTTT
CGCTGTGTTCGGCCCCCCTTTGGGCCCCCCTCTTGCGCTTCCCGTTCCAGTTGTAGCTTTTAGGCCTTTACTGTCCCTTTCCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCA
TGGCATGGTTACTACATAACACCAGCATCTTTTGAGAACAGGACCGCGGGCTTTACGGGCCCGTTGCGCGACCGACTCTGCCCCCCTCCTCCTACAATTCCCTCCTCGGCCCCCTGGCCA
ACGGGACGAGCCCCCGGGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAAAAGTGTCATCATATTTTAATGGCTTTCCCTTGTATGTATATTGGTCGTATT
TGCTTCTCCTAACTCTCCCTTTTTTCCTCGCGCCCAACACCCGCCGGCCACGAGGGAACCCCAATCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
CGCAGGTGCCCACACGCTAGGCAGCAAGGGCTTTGGGGACCCCACCCGCTTCGACAACGAGTACTACCGGGCCCTGCTTCGCCGCCCCTGGACCAATCCCAACGACTCGATGGCCTCCAT
GATCGGCCTGCCCTCGGATCATGTACTGCCGGATGACCCGGAGTGCCTGCCGTATATCGAGCGTTACGCGGAGGACCAGGACGCTTTCTTTGCGGACTTCGCGGCGGCGTACGTCAAGTT
GACGAGCTTGGGGGTCCCGGGGTGGGCGGTGTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAATATGTTCACCTGATCTGCAAAATAAAATGCGAATTGCTGCACAGAGTGTTTGTTGGCGTTCCGTCACTGCTGTGCGATGGTTGCCATGACCGGGATCAGACTAAAGAGCAGCCA
GCTCTTTCCAGGCGCCAGGTACTGGGTCTTTCTGCGCCGCTGCTGGGCGCATTAATTGGTGGAGTGCTGCCGTCCATTGGCCAGCTGGTCGCCACAGCCCCCGCCACCGCCGCTGCTATT
TCTGTCCCAGTTACTCCCTCCAGGGAAGTCAAGGCAGCCCTCAACAAGGCGCTAGCCCGGGCCATCCCCAAGGCCAAGACGGCCGTGGCGCTGCGACTTGTGTTTCACGACGCGGGCACC
TTCAGCTTTCCCCCGGGGAACGGGGGGCTGAACGCCTCCATACAGTACGAACTGGACCGCCCTGAAAATGCGGGGCTGAAGAGGGGGTGGAGGATCATAGAGCAGGGTGTTGCGACGGAT
GCGGACCTGGTGGCTCTAGCTGGGGCTTATGCGGTGCGGCTGTGTGGGGGCCCGGACATCGCTCTGGCGCTGGGCAGGCCGGTGGCGGCGGCGGCCTCCCCCGACCCCCCGGACCGCATG
CCCGGAGAGAACTTCACCGCGGAGCAGCTCAAGGCCAACTTCGCGGCCAAGGGGCTGAGCGTGCAGGAGATGGTGGCGCTGTCGGGTGCCCACACGCTAGGCAGCAAGGGCTTTGGGGAC
CCCACCCGCTTCGACAACGAGTACTACCGGGCCCTGCTTCGCCGCCCCTGGACCAATCCCAACGACTCGATGGCCTCCATGATCGGCCTGCCCTCGGATCATGTACTGCCGGATGACCCG
GAGTGCCTGCCGTATATCGAGCGTTACGCGGAGGACCAGGACGCTTTCTTTGCGGACTTCGCGGCGGCGTACGTCAAGTTGACGAGCTTGGGGGTCCCGGGGTGGGCGGTGTGA

Retrieve as FASTA