1. Browse the Database
  2. View Redoxidase
Entry information : ShirCIIBC04
Entry ID 8503
Creation 2011-09-20 (Christophe Dunand)
Last sequence changes 2011-09-20 (Christophe Dunand)
Sequence status complete
Reviewer Nizar Fawal
Last annotation changes 2012-10-26 (Nizar Fawal)
Peroxidase information: ShirCIIBC04
Name ShirCIIBC04
Class Other class II peroxidase type C    [Orthogroup: CIIBC001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Stereaceae Stereum
Organism Stereum hirsutum    [TaxId: 40492 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value ShirCIIBC04
start..stop		 S start..stop
ShirCIIBC06 593 0 1..358 1..352
ShirCIIBC05 585 0 1..355 1..350
ShirCIIBC03 583 0 1..358 1..357
ShirCIIBC02 559 0 1..358 1..360
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8503' 'complement(join(648043..648055,648116..648180,648237..648406,648464..648499,648557..648636,648693..648743,648800..648840,648895..648909,648970..649252,649306..649318,649375..649430,649486..649492,649547..649601,649659..649723,649787..649913))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 649787..649913 125 N° 2 649659..649723 63 N° 3 649547..649601 53 N° 4 649486..649492 5
N° 5 649375..649430 54 N° 6 649306..649318 11 N° 7 648970..649252 281 N° 8 648895..648909 13
N° 9 648800..648840 39 N° 10 648693..648743 49 N° 11 648557..648636 78 N° 12 648464..648499 34
N° 13 648237..648406 168 N° 14 648116..648180 63 N° 15 648043..648055 11  
complement(join(648043..648055,648116..648180,648237..648406,648464..648499,6485 57..648636,648693..648743,648800..648840,648895..648909,648970..649252,649306..6 49318,649375..649430,649486..649492,649547..649601,649659..649723,649787..649913 ))


exon

Literature and cross-references ShirCIIBC04
DNA ref. JGI genome:   scaffold_17 (649913..648043)
Cluster/Prediction ref. JGI gene:   10631
Protein sequence: ShirCIIBC04
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   358 (336)
PWM (Da):   %s   37892.69 (35759.5)  
PI (pH):   %s   4.01 (3.97) Peptide Signal:   %s   cut: 23 range:23-358
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAFAQLSAIVALALGAVHVAQAAPPPKVTCADGNVTANAVCCQLFPVVANLQENLFDGAQCGEAHSALRLSFHDAIGWSNFVDKGDGADGSILVFNATELQHANIGIDDITSVQFPVFQTTNLSAGDFVHLAAAVGTANCPGAPQLDFFFGRPPPTEPAADL
TVPEPTDSVDAIIERFTDAGFEVPEIVALLSSHTVAADEIDTTIPGTPFDTTPFTFDTQFFVETLLKGSLFPGNGSQAGEVLSPIPGEMRLQSDFELSDSRTACLWQAMINDQTRMQTQF
KAVMHKLELLGQPDTLVDCSDVIPVPAPFKGQAVFPATFSRRDIQQCDTEPFPTLQTLPGPETSVPPVPGS

Retrieve as FASTA  
Remarks Complete sequence from genomic (14 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTTTGCTCAGCTTTCCGCCATCGTCGCTCTCGCTCTTGGCGCAGTCCATGTCGCTCAGGCCGCTCCTCCACCGAAGGTTACCTGCGCCGACGGAAATGTCACCGCTAACGCTGTC
TGTTGCCGTCAGTAACGTTTCCCTCATTACTGTTATGCCTAGTGTGTGTAAACTAATTTTCTTGCTATAGAGAGCTGTTCCCCGTCGTTGCCAATCTCCAAGAGAACCTGTTCGACGGTG
CTCAGTGCGGTGAAGAGGTTCGAACAGGTTCTACTTGGACGAATACACTGATCCTGACTGGTTGGAATTATTAGGCGCTCACTCTGCTCTTCGTCTGAGCTTCCACGACGCGATTGGCTG
GTCGAATTTCGGTGAGCACTCCTGCTTAGACATCGGATGATACTCTCACTGACCTCTCTCGACAGTTTTGATAAGTTCGTGACTTCGTCGTTCCACTTGGTTTCCATCTACTCATCATGT
ATATCACAGGGGGGTGATGGCGCCGACGGTTCCATCTTGGTGTTCAACGCCACTGAGTTGCAATTCCGTGAGTGGTTATCACTCGTCTCATTTGTAATATTTCTCTGACTTACAGTTCAA
CAGACACGCCAACATTGGGTCAGTCTTATTCCTGAGAATTGACATGGATCGATGTTGACATTTTCCCACAGAAAATTGACGACATCACCTCCGTGCAATTCCCTGTCTTCCAGACCACGA
ACTTGTCCGCTGGTGACTTCGTCCACTTGGCTGCCGCTGTCGGGACGGCCAATTGCCCCGGCGCTCCTCAGCTCGACTTCTTCTTTGGTCGTCCCCCGCCTACGGAGCCCGCTGCTGATC
TGACTGTACCCGAGCCCACGGACTCTGTTGACGCTATCATTGAGAGGTTCACCGATGCCGGCTTCGAGGTCCCTGAGATCGTGGCCCTGCTATCGTCCCACACCGTCGCTGCTGCGGTAT
GTTCGATTTCATCTAGTCGTTCCATTGATACATAAGCTGATAGATGGACTCTATAGGAGACGAGATCGACACGGTATGTCATTGAGAGATGTTAGTAAGGTCTGCCTAACTGAATGTCAC
CAACTAGACACCATTCCCGGGACTCCTTTCGACACCACCCCTTTCACCTTGTAAGAATCGTCGTGTGCTCAAGGCATAATATCCATACTCACACGAATGATCTAAGTGTGACACTCAGTT
CTTCGTTGAGACCTTGTTGAAGGGGTCGTTGTTCCCCGGGTACGTTATCCGCTCACTCTTCTGGGGCCGTTCTCTGATGCTTCTTTTTTCCCTAGCACAATGGCTCTCAAGCTGGTGAAG
TTTTATCGCCCATCCCCGGAGAGATGCGTCTTCAGTCCGACTTTGAGCTCTCCCGTGGTAAGTGTCCTCGGCCAGATGTTCCAGTGAAAGCGATCCTAATCTTTGTTTCGACAGACACTC
CCGTACTGCTTGCTTGTGGCAGGCTATGATCAGTACGTAGATTCTATCGTCCCCTCAGCCTCCATCTCTATCTCTAACAACCAAGGCAGACACGACCAGACCCGCATGCAGACTCAGTTC
AAGGCTGTGATGCACAAGCTTGAGCTCCTCGGACAACCAGACACTCTCGTTGACTGTTCCGATGTCATCCCTGTCCCCGCTCCCTTCAAGGGACAGGCTGTCTTCCCCGCCACGTTCAGT
CGACGTGATATCCAGCAGGCTGTACGCCTTCCTATTGGTCTATGTCTGATCGCTGAGCTTACTGTAGGCTTAACTAGTGTGCGACACGGAGCCTTTCCCCACTCTCCAGACCCTCCCCGG
TCCCGAGACCTCCGTCCCTCCGGTGTAAGTACCTTCACTGTTTGAACTTGCTTTTTGTGTTTCTAACCTGTTTATGCGTGGTAGTCTCCTGGGTCTTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTTTGCTCAGCTTTCCGCCATCGTCGCTCTCGCTCTTGGCGCAGTCCATGTCGCTCAGGCCGCTCCTCCACCGAAGGTTACCTGCGCCGACGGAAATGTCACCGCTAACGCTGTC
TGTTGCCAGCTGTTCCCCGTCGTTGCCAATCTCCAAGAGAACCTGTTCGACGGTGCTCAGTGCGGTGAAGAGGCTCACTCTGCTCTTCGTCTGAGCTTCCACGACGCGATTGGCTGGTCG
AATTTCGTTGATAAGGGTGATGGCGCCGACGGTTCCATCTTGGTGTTCAACGCCACTGAGTTGCAATTCCACGCCAACATTGGAATTGACGACATCACCTCCGTGCAATTCCCTGTCTTC
CAGACCACGAACTTGTCCGCTGGTGACTTCGTCCACTTGGCTGCCGCTGTCGGGACGGCCAATTGCCCCGGCGCTCCTCAGCTCGACTTCTTCTTTGGTCGTCCCCCGCCTACGGAGCCC
GCTGCTGATCTGACTGTACCCGAGCCCACGGACTCTGTTGACGCTATCATTGAGAGGTTCACCGATGCCGGCTTCGAGGTCCCTGAGATCGTGGCCCTGCTATCGTCCCACACCGTCGCT
GCTGCGGACGAGATCGACACGACCATTCCCGGGACTCCTTTCGACACCACCCCTTTCACCTTTGACACTCAGTTCTTCGTTGAGACCTTGTTGAAGGGGTCGTTGTTCCCCGGCAATGGC
TCTCAAGCTGGTGAAGTTTTATCGCCCATCCCCGGAGAGATGCGTCTTCAGTCCGACTTTGAGCTCTCCCGTGACTCCCGTACTGCTTGCTTGTGGCAGGCTATGATCAACGACCAGACC
CGCATGCAGACTCAGTTCAAGGCTGTGATGCACAAGCTTGAGCTCCTCGGACAACCAGACACTCTCGTTGACTGTTCCGATGTCATCCCTGTCCCCGCTCCCTTCAAGGGACAGGCTGTC
TTCCCCGCCACGTTCAGTCGACGTGATATCCAGCAGGCTTGCGACACGGAGCCTTTCCCCACTCTCCAGACCCTCCCCGGTCCCGAGACCTCCGTCCCTCCGGTTCCTGGGTCTTAA

Retrieve as FASTA