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Entry information : ShirCIIBC05
Entry ID 8505
Creation 2011-09-20 (Christophe Dunand)
Last sequence changes 2012-03-28 (Christophe Dunand)
Sequence status complete
Reviewer Nizar Fawal
Last annotation changes 2012-10-26 (Nizar Fawal)
Peroxidase information: ShirCIIBC05
Name ShirCIIBC05
Class Other class II peroxidase type C    [Orthogroup: CIIBC001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Stereaceae Stereum
Organism Stereum hirsutum    [TaxId: 40492 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value ShirCIIBC05
start..stop		 S start..stop
ShirCIIBC04 599 0 1..350 1..355
ShirCIIBC06 578 0 1..350 1..349
ShirCIIBC03 549 0 1..350 1..354
ShirCIIBC02 533 0 1..350 1..357
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8505' 'complement(join(652289..652357,652415..652584,652637..652672,652737..652816,652874..652924,652979..653019,653160..653442,653566..653625,653727..653797,653856..653920,653979..654105))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 653979..654105 125 N° 2 653856..653920 63 N° 3 653727..653797 69 N° 4 653566..653625 58
N° 5 653160..653442 281 N° 6 652979..653019 39 N° 7 652874..652924 49 N° 8 652737..652816 78
N° 9 652637..652672 34 N° 10 652415..652584 168 N° 11 652289..652357 67  
complement(join(652289..652357,652415..652584,652637..652672,652737..652816,6528 74..652924,652979..653019,653160..653442,653566..653625,653727..653797,653856..6 53920,653979..654105))


exon

Literature and cross-references ShirCIIBC05
DNA ref. JGI genome:   scaffold_17 (654105..652289)
Cluster/Prediction ref. JGI gene:   7824
Protein sequence: ShirCIIBC05
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   350 (328)
PWM (Da):   %s   37042.44 (34785.2) Transmb domain:   %s   i7-29o
PI (pH):   %s   4.2 (4.26) Peptide Signal:   %s   cut: 23 range:23-350
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MDFSQLLSLVALALVASQVAEAAPPPKVTCADGNVTANAVCCQLFSAVAILQENLFDGAQCGEAHSALRLSFHDAIGFSIHGMQGLSGGGADGSILVFNATELKFRRIDDITSEQFPVFQTTNLSAGDFVHLAAAVGTANCPGAPQLDFFFGRAPPVAPAPD
LTVPEPTDSVDAIIERFADAGFSVDEIVALLSSHTVAATIPGTPFDTTPFTFDTQFFVETLLKGSLFPGNGSQAGEVLSPIHGEMRLQSDFELSDPRTACLWQAMINDQTRMQTQFKAAM
HKLELLGQPDTLVDCSDVIPVPAPFKGQAVFPATFSRRDIQQCLLEPFPTLQTLPGPETSVPPV*

Retrieve as FASTA  
Remarks Complete sequence from genomic (10 introns)
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATTTCTCGCAGCTTCTCTCCCTCGTGGCCCTCGCCCTCGTTGCCAGCCAGGTAGCCGAGGCTGCTCCTCCGCCGAAGGTTACCTGTGCTGACGGTAACGTAACCGCCAACGCTGTC
TGCTGTCGTCAGTCATCCCCGTCCTTTCATGGCTCAGTATACCTGTGCTGACGCTTTCGTCAAAGAGAGCTGTTCTCTGCGGTAGCCATCCTCCAGGAGAACTTGTTCGATGGCGCACAG
TGTGGTGAAGAGGTGTTTTGAATTATAGCTTGAGGTCGACGTACGGTCACTGATCGGTTCAATTTATTAGGCGCACACTCTGCTCTTCGTCTTAGTTTCCACGACGCAATCGGGTTCTCA
ATCCACGGTATGCAAGGTCTCTCGTTTCGTAGTGCAAATCACTGACTAAGATATTGTTTCTAGGCGGAAAGTATGTGATTCATCGATTTTCTATCCCTCGCTAAATACTAACTTTTTTCT
GAAGGGGGGTGGAGGAGCTGACGGTTCCATCTTGGTGTTCAATGCCACTGAACTGAAATTCCGTAGGTCATGAACCATCTCTTCGTTTTTGCTCAAATTTTCCTGACAGACATATCTCAC
AGACGCTAATATCGGGTAAGGCGCACCCTTTGGGGAAGAGACAAGCGAGTACTGAAATATCAGCCGCAGGAGATTGACGACATTACCTCCGAGCAGTTCCCGGTGTTCCAGACTACAAAT
TTATCCGCTGGTGACTTCGTCCACTTGGCTGCGGCTGTGGGCACGGCCAACTGCCCAGGTGCTCCCCAGCTCGACTTTTTCTTTGGACGCGCCCCGCCCGTTGCCCCTGCCCCCGACCTG
ACTGTTCCAGAGCCTACTGACTCCGTCGATGCTATCATTGAGAGATTTGCGGATGCCGGCTTCAGCGTTGACGAGATCGTCGCTCTACTGTCGTCTCACACCGTTGCTGCAGCAGTAAGT
CCCTTCCTAATCACTCATCCCTTGAACCCAGAGTTGATGGCTGATATTTCTTTAGGACGAAATCGACACGGTACGAGTTCGAAAGATATGAATGCGGACTCGGGTCTATGAACTGATACG
CTGTCATAAACCAGACACCATTCCTGGAACTCCCTTCGACACGACCCCCTTTACCTTGTGAGCCACTTCATGAATCTCAGGTCATCTCGATACTTACGTAGACTATTTTAGCGCGACACT
CAGTTCTTCGTCGAGACGTTGTTGAAAGGATCGTTATTCCCCGGGTATATCAGTCTCTGCATCTAGGTCAGGGACACTGTCTAATATCATACTTCGTCCAGTATAACGGCTCTCAGGCCG
GCGAGGTTTTGTCACCCATTCATGGAGAGATGCGTCTCCAGTCCGATTTCGAGCTCTCGCGCGGTGAGTCTGTGACAGCTGAATGCTCAGTTCCTCAGTCATCAGTGTCTGACCAGCGTA
ATCCTAGACACCCTCGAACTGCTTGCTTGTGGCAAGCCATGATCAGTGTGTAGTTCCTCTTCTCTACTTTTCCGGCCTAGTCTGACGGAACATGCAGACACGACCAGACCCGCATGCAGA
CTCAATTCAAGGCTGCGATGCATAAACTCGAGCTCCTCGGACAACCCGACACCCTCGTTGACTGTTCCGATGTTATTCCTGTCCCCGCCCCCTTCAAGGGACAGGCTGTTTTCCCCGCCA
CGTTCAGTCGACGTGACATCCAGCAAGCTGTATGTTCCCTCTACTAGTTCATGGCTAAGCAGAGCGCTGACTGTAGGCTTGTCCAGTGTGCCTTCTCGAGCCGTTCCCCACTCTCCAGAC
TCTTCCCGGTCCCGAGACCTCCGTCCCTCCTGTGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATTTCTCGCAGCTTCTCTCCCTCGTGGCCCTCGCCCTCGTTGCCAGCCAGGTAGCCGAGGCTGCTCCTCCGCCGAAGGTTACCTGTGCTGACGGTAACGTAACCGCCAACGCTGTC
TGCTGTCAGCTGTTCTCTGCGGTAGCCATCCTCCAGGAGAACTTGTTCGATGGCGCACAGTGTGGTGAAGAGGCACACTCTGCTCTTCGTCTTAGTTTCCACGACGCAATCGGGTTCTCA
ATCCACGGTATGCAAGGTCTCTCGGGTGGAGGAGCTGACGGTTCCATCTTGGTGTTCAATGCCACTGAACTGAAATTCCGTAGGATTGACGACATTACCTCCGAGCAGTTCCCGGTGTTC
CAGACTACAAATTTATCCGCTGGTGACTTCGTCCACTTGGCTGCGGCTGTGGGCACGGCCAACTGCCCAGGTGCTCCCCAGCTCGACTTTTTCTTTGGACGCGCCCCGCCCGTTGCCCCT
GCCCCCGACCTGACTGTTCCAGAGCCTACTGACTCCGTCGATGCTATCATTGAGAGATTTGCGGATGCCGGCTTCAGCGTTGACGAGATCGTCGCTCTACTGTCGTCTCACACCGTTGCT
GCAGCAACCATTCCTGGAACTCCCTTCGACACGACCCCCTTTACCTTCGACACTCAGTTCTTCGTCGAGACGTTGTTGAAAGGATCGTTATTCCCCGGTAACGGCTCTCAGGCCGGCGAG
GTTTTGTCACCCATTCATGGAGAGATGCGTCTCCAGTCCGATTTCGAGCTCTCGCGCGACCCTCGAACTGCTTGCTTGTGGCAAGCCATGATCAACGACCAGACCCGCATGCAGACTCAA
TTCAAGGCTGCGATGCATAAACTCGAGCTCCTCGGACAACCCGACACCCTCGTTGACTGTTCCGATGTTATTCCTGTCCCCGCCCCCTTCAAGGGACAGGCTGTTTTCCCCGCCACGTTC
AGTCGACGTGACATCCAGCAAGCTTGCCTTCTCGAGCCGTTCCCCACTCTCCAGACTCTTCCCGGTCCCGAGACCTCCGTCCCTCCTGTGTAA

Retrieve as FASTA