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Entry information : SbPrx63 (Sobic.003G152200.1 [2.1] / Sb03g013220 [1.4])
Entry ID 852
Creation 2006-01-06 (Christophe Dunand)
Last sequence changes 2006-01-06 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx63 (Sobic.003G152200.1 [2.1] / Sb03g013220 [1.4])
Name (synonym) SbPrx63 (Sobic.003G152200.1 [2.1] / Sb03g013220 [1.4])
Class Class III peroxidase    [Orthogroup: Prx050]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Callus
Cell culture
Leaves
Roots
Seedlings
Inducers Acid treatment
Alkaline treatment
Dark growth
Ethylene treatment
Oxidative stress
Phosphate starvation
Wounding
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx63
start..stop		 S start..stop
SiPrx03 606 0 7..366 5..355
ZmPrx143 600 0 1..366 1..355
BdiPrx67 554 0 9..353 9..344
TaPrx78-1D 546 0 5..353 67..399
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '852' 'join(16199259..16199483,16200933..16201823)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 16199259..16199483 223 N° 2 16200933..16201823 889  
join(16199259..16199483,16200933..16201823)


exon

Literature and cross-references SbPrx63 (Sobic.003G152200.1 [2.1] / Sb03g013220 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_3 (16199259..16201823)
Cluster/Prediction ref. PlantGDB:   SbGSStuc11-12-04.3753.1 UniGene:   Sbi.13245
Protein sequence: SbPrx63 (Sobic.003G152200.1 [2.1] / Sb03g013220 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   371 (344)
PWM (Da):   %s   38878.47 (36132.9) Transmb domain:   %s   i7-29o
PI (pH):   %s   7.31 (7.31) Peptide Signal:   %s   cut: 28 range:28-371
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MEAARSYFFVAAVAVVLIALLPASAIAAGLKVGFYNKSCPSAEAL
VQQAVAAAFKNDSGIAAGLIRLHFHDCFVRGCDGSVLIDSTANNTAEKDAPPNNPSLRGFEVIDAAKAAIEAQCPKTVSCADILAFAARDSVALSSSSASGSGKNLTYKVPAGRRDGRVSRDTDANSNLPSPLSTAAELVGNFTRKNLTA
EDMVVLSGAHTVGRSHCSSFTNRLYGFSNGSDVDPAISSAYAFLLRSICPSNTTRFFPPNTTTDMDLITPAVLDNKYYVGLTNNLGLFTSDQALLTNATLKKSVDEFVKSDSKWKSKFAK
SMVKMGNIEVLTGTQGEIRLSCRVINNGAGSSSSSAGLFELQMTTDNSAQEESAAN*

Retrieve as FASTA  
Remarks Complete sequence from 20 ESTs and genomic (with softberry prediction)(intron 1).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAGGCTGCGCGTAGCTACTTCTTCGTCGCCGCGGTTGCCGTCGTCCTTATTGCGCTTCTCCCGGCCAGCGCCATAGCCGCCGGCCTCAAGGTCGGCTTCTACAACAAGTCATGCCCG
TCGGCGGAGGCCCTGGTGCAGCAGGCGGTGGCTGCCGCCTTCAAGAACGACAGCGGCATCGCCGCCGGCCTCATCCGCCTGCACTTCCATGACTGCTTCGTCAGGGGGTACGTGCTGCGT
GCTTCCTCTTCGTCTTTGCTTCTGCATGCATTTCCATTTCCACTGTCTGTTTGCCCAGCGGTAATGTTTGGCTTATGCACCATGTACCTGTTTTTGCATAGTTCAGACATGGTTGCTTAT
TATTCATGTTTTCGGGAGATGAAGCAAGGCGTAATAATCAATTATTAATTAAACTAAACCCATTAACAGCAGGAAATTAAAGGATTGCTACCATGCATACTCCACTGTATCTGTATTTTG
AATACTGACACAAATCTAATATGCAATTCTAACTGCTATTTTTTTTATAGAAGTAGTAATAGAAAAATTTGTATAACTGTTATCATAGTACAGTAAATGCAAGTCTCTGATCCACATCGA
TCCTGTCTAACCACTCTTCGAACAACGAAGTAAACACTGACACGTACATATATGCATGAGGACAAACGGTACTGTCTAATTATGGTCATGTGCAGTTTAGACGGACTACCTCCATCTAGG
AAAGCAAGGAACAAAACAGATCAGCAATACCATTTTTGCAGTCTTCCAAAAAAAAAAGAGGGGGGAGGTGTATCGGTTTTAGCATAATACAGACATGAGAAGCAGACATATGGGAGTAGG
TTTTGCTTGGCAATAGTTATTGATCTGTTCATTAGTGAAGCACACCATGTCTACGTCATGAGCTCTATTAGGCATGTACTTTCCTTACGGTTGTGACTTGAATACGTACAGTAGCTATCA
TAATTCAGATGACTGAACATCTTTCAGACAAACAATGATATAATATGAAAAAAAAACGTGTAATGAAGTGGATCTTAAATGGATGAAGTTAGCAACCCCAATCACATTTTAATTTGTTTC
GGTACCGTCGTCGAATAGTGGTTGCCAACTGCCCAACACAGGCAACAAATTAAACAAGTGTACTTGTTGCACACATGTATCTCGATGTGTGTACTGTACAGTACTTGTTGCTGGTCCCAA
CCTCCCAGGCAGACATATGTCGAGTGTTTGTGTATGGCATGGACAAATACAGAGACAGATGACCTTGACCTTGATGACTTGTGGCGAGCACTGCACTTCCTCTTGGGCACAGTTGGCAAG
ACAGGCACATGATGTGGACAAACTATCCCGGTGAAGGACGACCAGTTGGGATGCACACGGACCATGGACCAACGACCATGGCACATGCATGCACACCAAATAGTTCATCGCCAACTACTA
TATTATACTGCAGTAATGCTTTTAGAATTAATTATTAGGGGTTGATCTTCTTGCCTTGCTAGAACTAGCAGCATGGACAGAGATGACGAAGTAATTAATTAAGATCATGCATACATGTGA
ATGAAAGAAAATAAAATAAAATATCCACGGCGGATGAATTACACTACATCTACACGCACACGTACACGCGTACGCATCAATACAACATCGTAAGGGATGACGCATCATGCATGCAGGGCT
GCGACGGCTCGGTGCTGATCGACTCGACGGCGAACAACACGGCGGAGAAGGACGCGCCCCCGAACAACCCGAGCCTTCGTGGCTTCGAGGTCATCGACGCCGCCAAGGCGGCGATCGAGG
CGCAGTGCCCCAAGACGGTCTCGTGCGCCGACATCCTGGCGTTCGCGGCGCGGGACAGCGTCGCGCTGTCGTCGTCGTCGGCGTCGGGGAGCGGCAAGAACCTGACGTACAAGGTCCCCG
CGGGGCGGCGCGACGGGCGGGTGTCGAGGGACACGGACGCCAACAGCAACCTCCCCTCGCCGCTCTCCACCGCCGCCGAGCTCGTCGGCAACTTCACGCGCAAGAACCTCACCGCCGAGG
ACATGGTGGTGCTCTCCGGCGCGCACACCGTCGGCCGCTCCCACTGCTCCTCCTTCACCAACCGCCTCTACGGCTTCAGCAACGGCAGCGACGTCGACCCGGCCATCAGCTCCGCCTACG
CCTTCCTGCTCAGGAGCATCTGCCCCTCCAACACCACCCGCTTCTTCCCCCCCAACACCACCACGGACATGGACCTCATCACGCCCGCCGTGCTCGACAACAAGTACTACGTGGGGCTCA
CCAACAACCTCGGGCTCTTCACGTCGGACCAGGCGCTGCTCACCAACGCCACGCTCAAGAAGTCCGTCGATGAGTTCGTCAAGAGCGACAGCAAGTGGAAGAGCAAGTTCGCCAAGTCCA
TGGTCAAGATGGGCAACATCGAGGTGCTCACGGGCACGCAGGGGGAGATCAGGCTCAGCTGCAGGGTCATCAACAACGGCGCCGGCAGCAGCAGCAGCAGCGCTGGATTATTCGAGCTTC
AAATGACAACCGACAACTCTGCTCAGGAGGAATCAGCAGCGAACTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAGGCTGCGCGTAGCTACTTCTTCGTCGCCGCGGTTGCCGTCGTCCTTATTGCGCTTCTCCCGGCCAGCGCCATAGCCGCCGGCCTCAAGGTCGGCTTCTACAACAAGTCATGCCCG
TCGGCGGAGGCCCTGGTGCAGCAGGCGGTGGCTGCCGCCTTCAAGAACGACAGCGGCATCGCCGCCGGCCTCATCCGCCTGCACTTCCATGACTGCTTCGTCAGGGGCTGCGACGGCTCG
GTGCTGATCGACTCGACGGCGAACAACACGGCGGAGAAGGACGCGCCCCCGAACAACCCGAGCCTTCGTGGCTTCGAGGTCATCGACGCCGCCAAGGCGGCGATCGAGGCGCAGTGCCCC
AAGACGGTCTCGTGCGCCGACATCCTGGCGTTCGCGGCGCGGGACAGCGTCGCGCTGTCGTCGTCGTCGGCGTCGGGGAGCGGCAAGAACCTGACGTACAAGGTCCCCGCGGGGCGGCGC
GACGGGCGGGTGTCGAGGGACACGGACGCCAACAGCAACCTCCCCTCGCCGCTCTCCACCGCCGCCGAGCTCGTCGGCAACTTCACGCGCAAGAACCTCACCGCCGAGGACATGGTGGTG
CTCTCCGGCGCGCACACCGTCGGCCGCTCCCACTGCTCCTCCTTCACCAACCGCCTCTACGGCTTCAGCAACGGCAGCGACGTCGACCCGGCCATCAGCTCCGCCTACGCCTTCCTGCTC
AGGAGCATCTGCCCCTCCAACACCACCCGCTTCTTCCCCCCCAACACCACCACGGACATGGACCTCATCACGCCCGCCGTGCTCGACAACAAGTACTACGTGGGGCTCACCAACAACCTC
GGGCTCTTCACGTCGGACCAGGCGCTGCTCACCAACGCCACGCTCAAGAAGTCCGTCGATGAGTTCGTCAAGAGCGACAGCAAGTGGAAGAGCAAGTTCGCCAAGTCCATGGTCAAGATG
GGCAACATCGAGGTGCTCACGGGCACGCAGGGGGAGATCAGGCTCAGCTGCAGGGTCATCAACAACGGCGCCGGCAGCAGCAGCAGCAGCGCTGGATTATTCGAGCTTCAAATGACAACC
GACAACTCTGCTCAGGAGGAATCAGCAGCGAACTAG

Retrieve as FASTA