Entry information : RcoAPx02 (RcApx2)
Entry ID 8547
Creation 2011-02-24 (Christophe Dunand)
Last sequence changes 2015-11-09 (Christophe Dunand)
Sequence status partial
Reviewer Achraf Jemmat
Last annotation changes 2015-11-09 (Achraf Jemmat)
Peroxidase information: RcoAPx02 (RcApx2)
Name (synonym) RcoAPx02 (RcApx2)
Class Ascorbate peroxidase     [Orthogroup: APx001]*
Taxonomy Eukaryota Viridiplantae Streptophyta Rubiaceae Rubia
Organism Rubia cordifolia    [TaxId: 339321 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RcoAPx02
start..stop
S start..stop
QshAPx01 294 2.76e-103 1..151 73..223
CpapAPx02 294 3.52e-103 1..151 73..223
EglAPx01 292 1.9e-102 1..151 73..223
VvAPx02 291 5.89e-102 1..151 73..223
Literature and cross-references RcoAPx02 (RcApx2)
Literature Shkryl,Y.N., Veremeichik,G.N., Bulgakov,V.P., Gorpenchenko,T.Y., Aminin,D.L. and Zhuravlev,Y.N. Decreased ROS level and activation of antioxidant gene expression in Agrobacterium rhizogenes pRiA4-transformed calli of Rubia cordifolia. Planta 232 (5), 1023-1032 (2010)
mRNA ref. GenBank:   GU949549.1
Protein sequence: RcoAPx02 (RcApx2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   151
PWM (Da):   %s   16476.55  
PI (pH):   %s   5.01
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GLDIAVRLLE PIKEQFPILS YADFYQLAGV VAVEITGGPD VPFHPGRPDK KESPPEGRLP DATKGNDHLR AVFGHMGLSD KDIVALSGAH TLGRCHKERS GFEGPWTTNP LIFDNSYFKE 
LLSGEKEGLI QLPSDKALLE DPVFRPLVEK Y 

Retrieve as FASTA  
Remarks
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGCCTTGATA TTGCCGTCAG GTTGTTGGAG CCGATCAAGG AGCAATTTCC GATTCTATCC TACGCGGATT TTTATCAGTT GGCGGGAGTT GTTGCTGTTG AGATTACTGG AGGGCCGGAC  GTTCCTTTTC ATCCCGGCCG ACCGGACAAA AAAGAATCTC CACCGGAAGG GCGATTGCCC GATGCAACCA AAGGTAATGA CCATTTGAGG GCTGTTTTCG GACATATGGG GCTGAGCGAC  AAGGACATAG TTGCTCTTTC TGGCGCTCAT ACATTGGGAA GGTGCCACAA GGAACGTTCT GGATTTGAGG GACCTTGGAC CACCAATCCT CTTATCTTTG ACAATTCCTA CTTCAAGGAG 
CTTTTGAGTG GAGAGAAAGA AGGTTTGATT CAGCTTCCAT CAGACAAAGC ACTTCTGGAG GATCCCGTGT TTCGTCCTCT AGTTGAGAAA TACGCCGCGG 

Retrieve as FASTA