View Redoxidase 9044

Entry information : GmPrx[P]267 (Glyma15g18780.1)

Entry ID	9044
Creation	2011-07-04 (Qiang Li)
Last sequence changes	2011-12-14 (Qiang Li)
Sequence status	theoretical translation / pseudogene
Reviewer	Not yet reviewed
Last annotation changes	2011-11-28 (Qiang Li)

Peroxidase information: GmPrx[P]267 (Glyma15g18780.1)

Name (synonym)

GmPrx[P]267 (Glyma15g18780.1)

Class

Class III peroxidase [Orthogroup: Prx157]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Fabaceae Glycine

Organism

Glycine max (soybean) [TaxId: 3847 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	GmPrx[P]267 start..stop	S start..stop
LjPrx47	304	1.88e-104	6..247	1..315
GmPrx183	283	6.65e-96	1..247	7..327
GmPrx76	263	4.86e-88	2..247	11..329
MtPrx09	260	4.02e-87	2..247	11..329

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9044' 'join(15653999..15654160,15654582..15654766,15655087..15655483)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	15653999..15654160	160	N° 2	15654582..15654766	183	N° 3	15655087..15655483	395
join(15653999..15654160,15654582..15654766,15655087..15655483)

Literature and cross-references GmPrx[P]267 (Glyma15g18780.1)

DNA ref.	Phytozome 12: Gm15 (15653999..15655483)

Protein sequence: GmPrx[P]267 (Glyma15g18780.1)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	247 (232)
PWM (Da):	27416.69 (25586.8)
PI (pH):	4.91 (5.07)	Peptide Signal:	cut: 21 range:16-247

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

AYFWLVNFFILACELTPDFYKTTCPDLYRIVRSEVQKALKYEMRM
GASLLRLHFGCDGSVLLDGGQDSEKFATPNLNYARGFEVIDTIKSSVERACSGVVSCADILAIAARDSVLLKCTFFSVRLFNFSGTQAPDSTIETTMLSELQNLCLQNGDGNTTSVLDQGSVDLFVNHY
FKNLLDGKGLLSSDQILFSSENATATTKPLVQFYSVNERVFFVEFAYAMIKMGNINPLTGYEGEIRRNCRVVN

Retrieve as FASTA

Remarks

Pseudogene from genomic. Inocrrect prediction from phytozome (5' end is missing and can't be found; Big gap in frame).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

GCATATTTCTGGCTTGTGAATTTCTTCATTTTGGCTTGTGAATTGACCCCAGATTTTTATAAGACTACATGCCCAGATCTTTATAGAATAGTTAGAAGCGAGGTTCAAAAAGCTCTAAAA
TATGAGATGCGAATGGGTGCTTCTTTGCTTCGGCTTCACTTCTCCATGATTTCTTTGTAAATGTAAGTCCATGTGGCAGTTATTTGCCTATTCATTGATTTTTTTGTTAAGGACCCAGAG
AATATTAGCAACGAACTTTTGAATACACCCTTTTGATTTATTAAACGAAAATGATTAGAAATCACATTTTTTTTTTTCTGAATTTCACTTCTTATGTAATTATTCTCACTCATAATTTTG
TAATTTTTAATAACTTATAACTAATAATAGTGTCTTGGAAGAAGTGAATAACACTCATCAGTGGATTGATATAATCAATATTGAATTGTTTAAAACTTGGTCATTCCGCTAGAAAACATT
TGGATGGATATAATATAGTACTAATTAATTTATGTAATAGGAATTGTCAACCTTTTTCTCTTCTTTTACTTTATTGTTTATCTAATTAATATATTTGGGTCTCAGGGTTGTGATGGTTCA
GTTCTGCTGGATGGAGGCCAAGATAGCGAGAAATTTGCTACTCCTAATTTGAATTATGCTAGAGGATTTGAAGTTATAGATACAATCAAAAGTTCAGTGGAGCGTGCATGTAGTGGAGTT
GTGTCCTGTGCTGATATATTAGCCATAGCTGCCAGAGATTCTGTTCTCCTCTTGTATGTTCAATGATAAAATATTGATCATTCATTAAAAAAAAAAAAACCCTCTTGGCAATGATTTCTC
CCTATTAATCGTCATGCTGATTTAAGTACGAAATTATTTCAACTTAATTGATATTTAAAGGAAGAATTTGTTAGTGATAATTATCTTATAAGACGCTAACAAAATTGTATAATTGTTGCT
CAACATGATAAGCTACTCTATAGTCTAGCAAAATGTTAGTACATTTGTTGCTTGCTTCTTATAATTCAATATATTATTACTAATATCTATTTATCTATTTATATGTATCAGGTTTCCACA
CTATTTGACGAGGAAGTGCACTTTTTTCAGTGTTAGATTGTTCAACTTCTCAGGGACACAAGCACCAGACAGTACAATAGAAACCACTATGCTGAGTGAGTTGCAAAATTTGTGCTTACA
AAACGGTGATGGGAACACAACCAGTGTGCTAGACCAAGGGTCAGTGGATCTATTTGTTAACCACTACTTCAAGAACTTGCTCGATGGGAAGGGTCTTCTTAGCTCTGACCAGATTCTCTT
TTCCAGTGAAAATGCCACGGCAACTACTAAGCCTTTGGTCCAATTTTATAGTGTTAATGAGAGAGTTTTCTTTGTAGAATTTGCCTATGCCATGATCAAGATGGGGAATATAAATCCTCT
AACTGGTTATGAGGGTGAGATTCGGAGGAACTGCAGAGTAGTTAATTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA